Wall clock time and date at job start Tue Mar 31 2020 13:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47258 * 2 1 4 4 C 1.46500 * 119.99514 * 90.00032 * 3 2 1 5 5 C 1.50699 * 109.46889 * 90.00498 * 4 3 2 6 6 O 1.21283 * 120.00343 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00156 * 179.97438 * 5 4 3 8 8 C 1.47029 * 125.64580 * 359.97438 * 7 5 4 9 9 C 1.54321 * 107.26870 * 181.08105 * 8 7 5 10 10 C 1.55159 * 102.94734 * 22.19165 * 9 8 7 11 11 O 1.42897 * 111.00330 * 82.57081 * 10 9 8 12 12 C 1.50694 * 111.00630 * 206.42508 * 10 9 8 13 13 H 1.07998 * 120.00284 * 21.15272 * 12 10 9 14 14 C 1.37876 * 119.99874 * 201.15447 * 12 10 9 15 15 N 1.31518 * 119.99679 * 174.28584 * 14 12 10 16 16 Si 1.86797 * 120.00308 * 354.28622 * 14 12 10 17 17 H 1.48506 * 109.46727 * 85.91372 * 16 14 12 18 18 H 1.48498 * 109.47492 * 205.91605 * 16 14 12 19 19 H 1.48501 * 109.46806 * 325.91904 * 16 14 12 20 20 C 1.47422 * 125.65105 * 179.97438 * 7 5 4 21 21 C 1.39670 * 120.00145 * 270.00407 * 3 2 1 22 22 C 1.38911 * 120.07400 * 179.71939 * 21 3 2 23 23 C 1.38103 * 119.92713 * 179.76767 * 22 21 3 24 24 C 1.38291 * 120.07149 * 0.51130 * 23 22 21 25 25 C 1.38283 * 120.15022 * 359.74294 * 24 23 22 26 26 C 1.38102 * 120.07378 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46808 * 299.99286 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99450 * 1 2 3 30 30 H 1.09006 * 109.46730 * 240.00323 * 2 1 3 31 31 H 1.08992 * 109.47366 * 120.00659 * 2 1 3 32 32 H 1.08999 * 109.47559 * 330.00466 * 4 3 2 33 33 H 1.08995 * 109.46810 * 210.00056 * 4 3 2 34 34 H 1.09001 * 109.87793 * 300.49772 * 8 7 5 35 35 H 1.08996 * 109.88477 * 61.50853 * 8 7 5 36 36 H 1.09004 * 110.72223 * 140.55299 * 9 8 7 37 37 H 1.08999 * 110.72128 * 263.65051 * 9 8 7 38 38 H 0.96695 * 114.00326 * 61.78078 * 11 10 9 39 39 H 0.97009 * 119.99778 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.36805 * 274.68711 * 20 7 5 41 41 H 1.08995 * 110.36824 * 37.01585 * 20 7 5 42 42 H 1.08003 * 120.03677 * 0.02562 * 22 21 3 43 43 H 1.07996 * 119.96949 * 180.25279 * 23 22 21 44 44 H 1.07995 * 119.92404 * 179.76566 * 24 23 22 45 45 H 1.08001 * 119.96679 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.03876 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8349 1.7037 6 8 4.4235 1.1559 1.0214 7 7 4.1391 2.3778 2.8510 8 6 3.3564 3.2180 3.7692 9 6 4.2928 3.6290 4.9250 10 6 5.7049 3.4647 4.3034 11 8 6.0626 4.6142 3.5337 12 6 6.7349 3.1883 5.3681 13 1 6.4290 2.7954 6.3264 14 6 8.0679 3.4372 5.1188 15 7 8.9532 3.3035 6.0823 16 14 8.6166 3.9644 3.4129 17 1 8.4839 5.4379 3.2836 18 1 10.0347 3.5750 3.2065 19 1 7.7671 3.2995 2.3923 20 6 5.5017 2.2275 3.3932 21 6 2.2511 2.0397 -1.2096 22 6 2.7086 3.3513 -1.2113 23 6 2.9423 3.9979 -2.4091 24 6 2.7113 3.3446 -3.6058 25 6 2.2508 2.0407 -3.6077 26 6 2.0196 1.3866 -2.4135 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.5818 1.6876 2.0285 33 1 2.0956 3.1409 1.1385 34 1 3.0005 4.1060 3.2468 35 1 2.5096 2.6527 4.1583 36 1 4.1169 4.6651 5.2140 37 1 4.1650 2.9647 5.7797 38 1 6.1102 5.4322 4.0471 39 1 9.8910 3.4790 5.9070 40 1 5.5788 1.3101 3.9768 41 1 6.2335 2.2268 2.5854 42 1 2.8854 3.8635 -0.2770 43 1 3.3019 5.0162 -2.4112 44 1 2.8912 3.8537 -4.5410 45 1 2.0710 1.5334 -4.5441 46 1 1.6604 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:27 Heat of formation + Delta-G solvation = -60.047557 kcal Electronic energy + Delta-G solvation = -27446.939523 eV Core-core repulsion = 23721.990034 eV Total energy + Delta-G solvation = -3724.949489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36703 -40.36338 -39.10949 -37.21918 -36.32881 -34.50391 -32.91377 -32.04469 -31.54622 -30.72768 -30.02369 -27.98573 -26.42943 -24.41882 -24.03940 -23.00329 -21.80092 -21.46284 -20.22094 -19.47116 -18.71959 -18.34759 -17.36044 -16.97843 -16.70539 -16.58561 -16.24006 -15.97296 -15.67159 -15.47991 -14.95598 -14.93444 -14.58489 -14.38129 -14.31983 -14.01264 -13.95436 -13.71610 -13.54542 -13.35264 -13.19328 -12.97229 -12.73084 -12.57806 -12.37344 -12.23314 -12.18740 -11.99134 -11.95560 -11.62985 -11.34138 -11.27296 -10.75221 -10.60319 -10.34535 -9.80724 -9.58598 -8.41583 -8.25502 -6.53145 0.55358 0.71558 1.37935 1.44823 1.60179 1.64506 1.83351 2.31219 2.35193 2.92493 3.02025 3.38975 3.65557 3.83639 3.86708 3.90586 4.10502 4.19400 4.24432 4.28389 4.31920 4.38287 4.44941 4.50955 4.55696 4.63114 4.63695 4.69535 4.79421 4.86262 4.95002 4.96982 5.01380 5.16882 5.18207 5.25387 5.32849 5.34838 5.38728 5.52791 5.62000 5.75551 5.98619 6.02407 6.24710 6.53489 6.55885 6.65194 6.99427 7.17257 7.27461 8.71227 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.003730 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.492300 B = 7504.134043 C = 8338.354307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.612 5.612 4 C 0.120 3.880 5 C 0.491 3.509 6 O -0.590 6.590 7 N -0.614 5.614 8 C 0.103 3.897 9 C -0.138 4.138 10 C 0.213 3.787 11 O -0.567 6.567 12 C -0.543 4.543 13 H 0.057 0.943 14 C 0.034 3.966 15 N -0.930 5.930 16 Si 0.990 3.010 17 H -0.271 1.271 18 H -0.335 1.335 19 H -0.283 1.283 20 C 0.117 3.883 21 C 0.209 3.791 22 C -0.216 4.216 23 C -0.085 4.085 24 C -0.190 4.190 25 C -0.079 4.079 26 C -0.206 4.206 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.385 0.615 39 H 0.267 0.733 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.984 -0.092 -12.964 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.004 4.004 3 N -0.321 5.321 4 C -0.007 4.007 5 C 0.280 3.720 6 O -0.470 6.470 7 N -0.348 5.348 8 C -0.019 4.019 9 C -0.176 4.176 10 C 0.173 3.827 11 O -0.376 6.376 12 C -0.581 4.581 13 H 0.075 0.925 14 C -0.167 4.167 15 N -0.567 5.567 16 Si 0.825 3.175 17 H -0.197 1.197 18 H -0.268 1.268 19 H -0.210 1.210 20 C -0.007 4.007 21 C 0.107 3.893 22 C -0.239 4.239 23 C -0.103 4.103 24 C -0.210 4.210 25 C -0.098 4.098 26 C -0.228 4.228 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.130 0.870 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.532 -1.008 -13.630 25.503 hybrid contribution 1.495 0.364 0.240 1.557 sum -20.037 -0.643 -13.390 24.108 Atomic orbital electron populations 1.22127 0.93978 1.02998 1.02542 1.21497 0.95205 0.81112 1.02626 1.46284 1.70246 1.13948 1.01647 1.21362 0.90660 1.00911 0.87779 1.22080 0.92012 0.78895 0.79033 1.90666 1.60003 1.41696 1.54640 1.48852 1.13224 1.50493 1.22246 1.22304 0.94450 0.94944 0.90177 1.23136 0.93565 1.03598 0.97283 1.20092 0.92814 0.82672 0.87157 1.86112 1.90377 1.19603 1.41554 1.21489 0.91575 1.45023 1.00043 0.92497 1.25698 0.96981 0.94059 0.99915 1.70048 1.02937 1.49449 1.34316 0.85051 0.72810 0.79146 0.80461 1.19713 1.26771 1.21026 1.22512 0.83439 0.98735 0.95994 1.18031 0.93251 0.91519 0.86470 1.20817 1.09131 0.94856 0.99063 1.21150 0.96965 1.00094 0.92125 1.21189 1.05430 0.96125 0.98230 1.21218 0.96082 0.94606 0.97844 1.20898 1.09674 1.01163 0.91077 0.90168 0.91868 0.92603 0.91019 0.91523 0.84567 0.86288 0.89324 0.88290 0.88112 0.90330 0.76464 0.92363 0.91755 0.94564 0.86995 0.85103 0.84574 0.83861 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.24 71.98 0.74 -1.40 16 2 C 0.12 2.33 5.88 86.38 0.51 2.84 16 3 N -0.61 -14.86 2.09 -701.63 -1.47 -16.33 16 4 C 0.12 2.74 4.84 85.63 0.41 3.15 16 5 C 0.49 16.89 7.92 87.66 0.69 17.58 16 6 O -0.59 -26.49 16.69 -3.04 -0.05 -26.54 16 7 N -0.61 -21.16 3.33 -811.75 -2.70 -23.86 16 8 C 0.10 2.51 6.49 86.73 0.56 3.08 16 9 C -0.14 -4.17 6.14 31.78 0.20 -3.97 16 10 C 0.21 8.95 0.69 -10.14 -0.01 8.95 16 11 O -0.57 -23.28 8.88 -148.98 -1.32 -24.60 16 12 C -0.54 -28.40 8.87 25.60 0.23 -28.18 16 13 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 14 C 0.03 1.93 5.46 84.65 0.46 2.39 16 15 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 16 Si 0.99 50.03 24.85 68.60 1.70 51.73 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.34 -17.54 7.11 99.48 0.71 -16.84 16 19 H -0.28 -15.03 5.23 99.48 0.52 -14.51 16 20 C 0.12 5.14 5.79 86.86 0.50 5.64 16 21 C 0.21 5.57 6.55 38.21 0.25 5.82 16 22 C -0.22 -5.92 9.21 22.40 0.21 -5.72 16 23 C -0.08 -2.07 10.04 22.25 0.22 -1.85 16 24 C -0.19 -4.13 10.04 22.29 0.22 -3.90 16 25 C -0.08 -1.67 10.04 22.25 0.22 -1.44 16 26 C -0.21 -4.85 9.21 22.40 0.21 -4.65 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.45 6.20 -2.38 -0.01 1.44 16 31 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.14 2.12 8.07 -2.39 -0.02 2.10 16 33 H 0.12 2.34 6.19 -2.39 -0.01 2.32 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 38 H 0.39 13.22 9.02 -74.06 -0.67 12.55 16 39 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.06 2.93 8.03 -2.39 -0.02 2.91 16 41 H 0.04 1.87 6.10 -2.39 -0.01 1.86 16 42 H 0.11 3.04 6.14 -2.91 -0.02 3.02 16 43 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.13 2.65 6.14 -2.91 -0.02 2.63 16 Total: -1.00 -76.77 367.88 2.22 -74.55 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.13 Total: 22.44 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.63 Total: -1.65 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -3.87 Total: -95.93 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -1.37 Total: -51.14 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.70 Total: 51.73 kcal Total: -76.77 2.22 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.501 kcal (2) G-P(sol) polarization free energy of solvation -76.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds