Wall clock time and date at job start Tue Mar 31 2020 13:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46908 * 109.47268 * 2 1 4 4 C 1.46901 * 110.99886 * 204.96054 * 3 2 1 5 5 C 1.50701 * 109.47243 * 66.04571 * 4 3 2 6 6 H 1.08003 * 119.99913 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99792 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00324 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99987 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47479 * 120.00131 * 9 7 5 12 12 H 1.48508 * 109.47065 * 240.00010 * 9 7 5 13 13 C 1.46895 * 110.99761 * 81.00241 * 3 2 1 14 14 N 1.46498 * 109.47353 * 277.08808 * 13 3 2 15 15 C 1.33773 * 122.72814 * 285.82878 * 14 13 3 16 16 O 1.21225 * 125.26575 * 359.95276 * 15 14 13 17 17 C 1.51170 * 109.47358 * 179.68309 * 15 14 13 18 18 H 1.09000 * 113.31430 * 237.06508 * 17 15 14 19 19 C 1.56100 * 108.28261 * 110.47793 * 17 15 14 20 20 H 1.09003 * 116.24262 * 86.88319 * 19 17 15 21 21 C 1.54833 * 103.44008 * 316.55159 * 19 17 15 22 22 C 1.31785 * 109.03297 * 290.55052 * 21 19 17 23 23 C 1.53350 * 108.42611 * 359.90035 * 22 21 19 24 24 H 1.08994 * 116.27964 * 199.52434 * 23 22 21 25 25 C 1.57225 * 99.83527 * 326.70757 * 23 22 21 26 26 C 1.55744 * 103.25270 * 0.30342 * 17 15 14 27 27 C 1.52994 * 113.52985 * 236.85749 * 26 17 15 28 28 C 1.33776 * 122.72876 * 106.02056 * 14 13 3 29 29 O 1.21228 * 125.26519 * 0.02562 * 28 14 13 30 30 H 1.08998 * 109.47049 * 291.42678 * 1 2 3 31 31 H 1.09009 * 109.47169 * 51.42568 * 1 2 3 32 32 H 1.08994 * 109.47078 * 171.42389 * 1 2 3 33 33 H 1.08999 * 109.47436 * 240.00246 * 2 1 3 34 34 H 1.09001 * 109.47512 * 119.99913 * 2 1 3 35 35 H 1.09004 * 109.46439 * 186.04811 * 4 3 2 36 36 H 1.09003 * 109.46965 * 306.04046 * 4 3 2 37 37 H 0.97000 * 120.00497 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47150 * 157.08635 * 13 3 2 39 39 H 1.08999 * 109.47541 * 37.08948 * 13 3 2 40 40 H 1.07999 * 125.17123 * 110.45327 * 21 19 17 41 41 H 1.08001 * 125.78902 * 179.91766 * 22 21 19 42 42 H 1.08997 * 112.52038 * 165.44448 * 25 23 22 43 43 H 1.09001 * 112.52024 * 293.30143 * 25 23 22 44 44 H 1.09006 * 109.47462 * 59.99974 * 27 26 17 45 45 H 1.09005 * 109.47393 * 179.97438 * 27 26 17 46 46 H 1.08995 * 109.47365 * 300.00230 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.3674 1.4669 -0.5787 5 6 3.3089 1.1073 -2.0411 6 1 2.3648 0.8447 -2.4952 7 6 4.4603 1.1146 -2.7993 8 7 5.6097 1.4359 -2.2467 9 14 4.3877 0.6696 -4.6121 10 1 2.9870 0.3499 -4.9876 11 1 4.8686 1.8168 -5.4231 12 1 5.2499 -0.5124 -4.8665 13 6 1.9929 1.9528 1.3545 14 7 0.6457 2.4460 1.6508 15 6 0.1534 3.5698 1.1177 16 8 0.7441 4.2965 0.3479 17 6 -1.2559 3.7900 1.6185 18 1 -1.9907 3.8700 0.8175 19 6 -1.2485 5.0234 2.5753 20 1 -1.3713 5.9990 2.1049 21 6 0.0164 4.8005 3.4399 22 6 -0.1842 3.7710 4.2377 23 6 -1.5927 3.2232 3.9773 24 1 -2.0220 2.6023 4.7635 25 6 -2.3405 4.5610 3.6265 26 6 -1.4938 2.5734 2.5613 27 6 -2.7127 1.7322 2.1773 28 6 -0.1910 1.8112 2.4795 29 8 0.0557 0.7812 3.0694 30 1 -0.3633 0.3754 0.9566 31 1 -0.3634 0.6408 -0.8035 32 1 -0.3633 -1.0161 -0.1532 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7487 2.4821 -0.4691 36 1 4.0284 0.7725 -0.0599 37 1 6.4198 1.4407 -2.7801 38 1 2.7035 2.7770 1.4171 39 1 2.2650 1.1830 2.0767 40 1 0.9162 5.3958 3.3910 41 1 0.5232 3.3795 4.9538 42 1 -3.3096 4.3874 3.1588 43 1 -2.4111 5.2359 4.4796 44 1 -2.5813 1.3417 1.1680 45 1 -2.8167 0.9026 2.8767 46 1 -3.6082 2.3525 2.2130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902068578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:34 Heat of formation + Delta-G solvation = -1.312743 kcal Electronic energy + Delta-G solvation = -28904.223305 eV Core-core repulsion = 25181.820749 eV Total energy + Delta-G solvation = -3722.402556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.08229 -39.20770 -38.32843 -36.67094 -34.98139 -32.97503 -32.50358 -30.30575 -29.94230 -28.76913 -27.48143 -26.23867 -24.24495 -23.98801 -22.53308 -21.22953 -20.90005 -20.08953 -19.11769 -18.60721 -17.17978 -16.64138 -16.47972 -16.15623 -15.76546 -15.03183 -14.92481 -14.33845 -14.23367 -13.91908 -13.79816 -13.70727 -13.33890 -13.08054 -12.69701 -12.58098 -12.50611 -12.25414 -12.21293 -12.09997 -11.66181 -11.58831 -11.45843 -11.31071 -11.15342 -11.00277 -10.75746 -10.71151 -10.57014 -10.25120 -10.02457 -9.87013 -9.63624 -9.49062 -9.31019 -9.18136 -8.45757 -7.43621 -6.03690 -4.04685 1.64751 2.00474 2.75598 3.01637 3.31557 3.38834 3.44038 3.71027 3.98800 4.14461 4.25116 4.42718 4.51550 4.57911 4.65621 4.83152 4.86854 4.91817 5.06708 5.29930 5.31637 5.32274 5.43347 5.49323 5.50405 5.53411 5.62372 5.65645 5.67337 5.75486 5.83190 5.89141 5.95138 5.99605 6.08549 6.14839 6.32077 6.56146 6.65047 6.75078 7.07033 7.25284 7.29144 7.62353 7.75860 8.01505 8.07064 8.17616 8.46997 9.01871 9.59129 11.07281 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003996 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.730986 B = 7004.957043 C = 7330.002868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 N -0.542 5.542 4 C 0.201 3.799 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.265 3.735 14 N -0.557 5.557 15 C 0.538 3.462 16 O -0.461 6.461 17 C -0.126 4.126 18 H 0.132 0.868 19 C -0.057 4.057 20 H 0.121 0.879 21 C -0.166 4.166 22 C -0.175 4.175 23 C -0.052 4.052 24 H 0.115 0.885 25 C -0.112 4.112 26 C -0.097 4.097 27 C -0.122 4.122 28 C 0.546 3.454 29 O -0.488 6.488 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.025 0.975 35 H 0.034 0.966 36 H -0.005 1.005 37 H 0.261 0.739 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.172 5.174 14.083 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 N -0.268 5.268 4 C 0.076 3.924 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.054 3.946 14 N -0.300 5.300 15 C 0.325 3.675 16 O -0.330 6.330 17 C -0.147 4.147 18 H 0.150 0.850 19 C -0.075 4.075 20 H 0.139 0.861 21 C -0.184 4.184 22 C -0.193 4.193 23 C -0.070 4.070 24 H 0.133 0.867 25 C -0.149 4.149 26 C -0.101 4.101 27 C -0.180 4.180 28 C 0.335 3.665 29 O -0.361 6.361 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.742 5.293 13.594 22.969 hybrid contribution 0.958 -0.757 -0.596 1.359 sum -16.783 4.537 12.998 21.707 Atomic orbital electron populations 1.21968 0.96991 1.00562 1.01028 1.22070 0.94380 0.89510 1.01267 1.61746 1.29819 1.18565 1.16632 1.19715 0.80881 0.97097 0.94710 1.21128 0.94017 1.45577 0.93607 0.91768 1.24969 0.95294 0.95472 0.98781 1.69963 0.98633 1.48885 1.36248 0.86423 0.78080 0.77940 0.84874 1.19675 1.20963 1.21107 1.22176 0.80859 0.99053 0.92550 1.46902 1.17605 1.23986 1.41497 1.20279 0.88402 0.79936 0.78868 1.90782 1.65000 1.47015 1.30227 1.23453 0.96394 0.95878 0.98983 0.84996 1.23364 0.93708 0.96842 0.93596 0.86071 1.24557 0.98977 0.98402 0.96425 1.24187 0.97783 0.97271 1.00060 1.22826 0.94196 0.96076 0.93917 0.86684 1.24272 0.97667 0.94923 0.98042 1.22709 0.95212 0.95030 0.97121 1.21509 0.94506 0.99363 1.02592 1.20265 0.86045 0.83324 0.76889 1.90720 1.79194 1.21400 1.44818 0.93831 0.92512 0.93291 0.89313 0.95670 0.94797 0.98723 0.92930 0.89083 0.91543 0.85020 0.84961 0.89878 0.89735 0.91417 0.90858 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.71 37.16 0.36 -2.24 16 2 C 0.06 1.15 5.54 -3.82 -0.02 1.13 16 3 N -0.54 -12.16 4.50 -239.98 -1.08 -13.24 16 4 C 0.20 5.31 4.66 -4.97 -0.02 5.29 16 5 C -0.50 -14.39 8.17 -34.44 -0.28 -14.67 16 6 H 0.06 1.83 7.40 -52.48 -0.39 1.44 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.26 5.16 5.38 -63.32 -0.34 4.82 16 14 N -0.56 -9.28 2.01 -118.79 -0.24 -9.52 16 15 C 0.54 8.76 5.68 -11.20 -0.06 8.70 16 16 O -0.46 -9.35 17.67 5.60 0.10 -9.25 16 17 C -0.13 -1.41 3.64 -88.42 -0.32 -1.73 16 18 H 0.13 1.25 8.02 -51.93 -0.42 0.83 16 19 C -0.06 -0.51 5.22 -84.97 -0.44 -0.96 16 20 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 21 C -0.17 -1.76 8.51 -34.08 -0.29 -2.05 16 22 C -0.18 -1.82 8.52 -34.87 -0.30 -2.11 16 23 C -0.05 -0.45 4.57 -86.48 -0.40 -0.85 16 24 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.11 -0.75 6.63 -21.41 -0.14 -0.89 16 26 C -0.10 -1.04 0.86 -152.31 -0.13 -1.17 16 27 C -0.12 -1.05 9.12 37.15 0.34 -0.71 16 28 C 0.55 8.12 2.75 -11.20 -0.03 8.08 16 29 O -0.49 -8.41 16.43 5.60 0.09 -8.32 16 30 H 0.04 0.73 3.84 -51.93 -0.20 0.53 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.98 6.59 -51.93 -0.34 1.64 16 34 H 0.03 0.51 7.53 -51.93 -0.39 0.12 16 35 H 0.03 0.97 7.79 -51.93 -0.40 0.56 16 36 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.09 1.81 7.61 -51.93 -0.40 1.42 16 39 H 0.07 1.27 6.88 -51.93 -0.36 0.92 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.08 0.43 7.62 -51.93 -0.40 0.03 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.44 7.63 -51.93 -0.40 0.04 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -33.41 359.63 -9.22 -42.63 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.05 Total: -0.70 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.18 Total: 2.16 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.58 Total: -48.92 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.19 Total: -17.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.41 -9.22 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902068578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.316 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds