Wall clock time and date at job start Tue Mar 31 2020 13:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46908 * 109.47268 * 2 1 4 4 C 1.46901 * 110.99886 * 204.96054 * 3 2 1 5 5 C 1.50701 * 109.47243 * 66.04571 * 4 3 2 6 6 H 1.08003 * 119.99913 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99792 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00324 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99987 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47479 * 120.00131 * 9 7 5 12 12 H 1.48508 * 109.47065 * 240.00010 * 9 7 5 13 13 C 1.46895 * 110.99761 * 81.00241 * 3 2 1 14 14 N 1.46498 * 109.47353 * 277.08808 * 13 3 2 15 15 C 1.33773 * 122.72814 * 285.82878 * 14 13 3 16 16 O 1.21225 * 125.26575 * 359.95276 * 15 14 13 17 17 C 1.51170 * 109.47358 * 179.68309 * 15 14 13 18 18 H 1.09000 * 113.31430 * 237.06508 * 17 15 14 19 19 C 1.56100 * 108.28261 * 110.47793 * 17 15 14 20 20 H 1.09003 * 116.24262 * 86.88319 * 19 17 15 21 21 C 1.54833 * 103.44008 * 316.55159 * 19 17 15 22 22 C 1.31785 * 109.03297 * 290.55052 * 21 19 17 23 23 C 1.53350 * 108.42611 * 359.90035 * 22 21 19 24 24 H 1.08994 * 116.27964 * 199.52434 * 23 22 21 25 25 C 1.57225 * 99.83527 * 326.70757 * 23 22 21 26 26 C 1.55744 * 103.25270 * 0.30342 * 17 15 14 27 27 C 1.52994 * 113.52985 * 236.85749 * 26 17 15 28 28 C 1.33776 * 122.72876 * 106.02056 * 14 13 3 29 29 O 1.21228 * 125.26519 * 0.02562 * 28 14 13 30 30 H 1.08998 * 109.47049 * 291.42678 * 1 2 3 31 31 H 1.09009 * 109.47169 * 51.42568 * 1 2 3 32 32 H 1.08994 * 109.47078 * 171.42389 * 1 2 3 33 33 H 1.08999 * 109.47436 * 240.00246 * 2 1 3 34 34 H 1.09001 * 109.47512 * 119.99913 * 2 1 3 35 35 H 1.09004 * 109.46439 * 186.04811 * 4 3 2 36 36 H 1.09003 * 109.46965 * 306.04046 * 4 3 2 37 37 H 0.97000 * 120.00497 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47150 * 157.08635 * 13 3 2 39 39 H 1.08999 * 109.47541 * 37.08948 * 13 3 2 40 40 H 1.07999 * 125.17123 * 110.45327 * 21 19 17 41 41 H 1.08001 * 125.78902 * 179.91766 * 22 21 19 42 42 H 1.08997 * 112.52038 * 165.44448 * 25 23 22 43 43 H 1.09001 * 112.52024 * 293.30143 * 25 23 22 44 44 H 1.09006 * 109.47462 * 59.99974 * 27 26 17 45 45 H 1.09005 * 109.47393 * 179.97438 * 27 26 17 46 46 H 1.08995 * 109.47365 * 300.00230 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.3674 1.4669 -0.5787 5 6 3.3089 1.1073 -2.0411 6 1 2.3648 0.8447 -2.4952 7 6 4.4603 1.1146 -2.7993 8 7 5.6097 1.4359 -2.2467 9 14 4.3877 0.6696 -4.6121 10 1 2.9870 0.3499 -4.9876 11 1 4.8686 1.8168 -5.4231 12 1 5.2499 -0.5124 -4.8665 13 6 1.9929 1.9528 1.3545 14 7 0.6457 2.4460 1.6508 15 6 0.1534 3.5698 1.1177 16 8 0.7441 4.2965 0.3479 17 6 -1.2559 3.7900 1.6185 18 1 -1.9907 3.8700 0.8175 19 6 -1.2485 5.0234 2.5753 20 1 -1.3713 5.9990 2.1049 21 6 0.0164 4.8005 3.4399 22 6 -0.1842 3.7710 4.2377 23 6 -1.5927 3.2232 3.9773 24 1 -2.0220 2.6023 4.7635 25 6 -2.3405 4.5610 3.6265 26 6 -1.4938 2.5734 2.5613 27 6 -2.7127 1.7322 2.1773 28 6 -0.1910 1.8112 2.4795 29 8 0.0557 0.7812 3.0694 30 1 -0.3633 0.3754 0.9566 31 1 -0.3634 0.6408 -0.8035 32 1 -0.3633 -1.0161 -0.1532 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7487 2.4821 -0.4691 36 1 4.0284 0.7725 -0.0599 37 1 6.4198 1.4407 -2.7801 38 1 2.7035 2.7770 1.4171 39 1 2.2650 1.1830 2.0767 40 1 0.9162 5.3958 3.3910 41 1 0.5232 3.3795 4.9538 42 1 -3.3096 4.3874 3.1588 43 1 -2.4111 5.2359 4.4796 44 1 -2.5813 1.3417 1.1680 45 1 -2.8167 0.9026 2.8767 46 1 -3.6082 2.3525 2.2130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902068578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:33 Heat of formation + Delta-G solvation = -22.857338 kcal Electronic energy + Delta-G solvation = -28905.157549 eV Core-core repulsion = 25181.820749 eV Total energy + Delta-G solvation = -3723.336800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.12474 -40.33285 -39.66823 -38.36718 -36.38932 -34.79052 -33.76049 -31.88159 -30.93272 -29.93377 -28.74318 -27.49284 -25.64216 -25.24064 -24.45619 -22.43820 -22.11926 -21.19022 -20.32817 -19.49838 -18.78709 -18.08007 -17.81346 -17.35704 -17.01417 -16.73359 -16.36590 -15.91653 -15.79195 -15.35118 -15.06320 -14.86723 -14.70489 -14.32155 -14.15773 -14.06598 -13.49880 -13.35580 -13.26366 -13.05991 -12.98080 -12.93391 -12.80434 -12.67638 -12.44811 -12.36551 -12.11675 -11.96556 -11.91159 -11.82908 -11.54539 -11.52526 -11.13641 -10.90930 -10.87145 -10.67570 -10.09205 -9.32293 -8.26517 -6.36922 0.49724 1.10307 1.36940 1.38393 1.45839 1.52653 1.79582 2.36252 2.81931 3.00489 3.06309 3.17193 3.27960 3.40645 3.73865 3.77583 3.79412 3.94548 4.03212 4.05947 4.09628 4.21326 4.29809 4.36833 4.45876 4.54284 4.56284 4.61226 4.74809 4.86528 4.87150 4.91813 4.92166 4.99592 5.07652 5.13776 5.14497 5.20909 5.24001 5.31802 5.38397 5.56501 5.73856 5.82448 5.94984 6.17099 6.37909 6.40772 6.75786 6.83135 7.32200 8.85185 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003996 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.730986 B = 7004.957043 C = 7330.002868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 N -0.547 5.547 4 C 0.218 3.782 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.269 3.731 14 N -0.563 5.563 15 C 0.530 3.470 16 O -0.513 6.513 17 C -0.116 4.116 18 H 0.161 0.839 19 C -0.054 4.054 20 H 0.136 0.864 21 C -0.185 4.185 22 C -0.186 4.186 23 C -0.046 4.046 24 H 0.135 0.865 25 C -0.089 4.089 26 C -0.086 4.086 27 C -0.122 4.122 28 C 0.540 3.460 29 O -0.514 6.514 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.001 0.999 36 H -0.029 1.029 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.267 5.180 14.164 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 N -0.273 5.273 4 C 0.092 3.908 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.200 1.200 13 C 0.057 3.943 14 N -0.305 5.305 15 C 0.320 3.680 16 O -0.386 6.386 17 C -0.136 4.136 18 H 0.178 0.822 19 C -0.072 4.072 20 H 0.154 0.846 21 C -0.203 4.203 22 C -0.204 4.204 23 C -0.065 4.065 24 H 0.153 0.847 25 C -0.126 4.126 26 C -0.089 4.089 27 C -0.179 4.179 28 C 0.331 3.669 29 O -0.389 6.389 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.019 0.981 36 H -0.011 1.011 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.885 5.295 13.717 26.366 hybrid contribution 2.348 -0.765 -0.518 2.523 sum -19.538 4.530 13.199 24.009 Atomic orbital electron populations 1.21854 0.94064 1.02102 1.01239 1.22084 0.96691 0.88147 1.00184 1.61719 1.27304 1.19944 1.18319 1.19310 0.82688 0.94306 0.94498 1.21364 0.94163 1.45991 0.94475 0.92025 1.25921 0.94709 0.95014 1.03850 1.70088 0.99430 1.49525 1.38280 0.85280 0.78543 0.77927 0.78540 1.18777 1.20378 1.19996 1.21904 0.83080 0.98251 0.91060 1.47014 1.16570 1.24666 1.42212 1.21315 0.90374 0.78686 0.77598 1.90751 1.66759 1.48419 1.32662 1.23651 0.92694 0.97289 1.00012 0.82171 1.23530 0.93737 0.96600 0.93347 0.84631 1.24713 0.99625 0.98678 0.97255 1.24379 0.99131 0.97172 0.99695 1.22990 0.93235 0.97283 0.92970 0.84685 1.24259 0.97613 0.93107 0.97635 1.22884 0.93316 0.94209 0.98473 1.21622 0.94479 0.99775 1.01988 1.21184 0.87203 0.83015 0.75481 1.90703 1.79937 1.22713 1.45531 0.93014 0.93078 0.90765 0.91296 0.95787 0.98067 1.01137 0.92527 0.90842 0.91650 0.86770 0.86070 0.86653 0.88095 0.92356 0.90594 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.71 71.98 0.70 -3.96 16 2 C 0.06 2.41 5.54 86.30 0.48 2.89 16 3 N -0.55 -25.91 4.50 -913.15 -4.11 -30.01 16 4 C 0.22 12.35 4.66 85.56 0.40 12.75 16 5 C -0.52 -30.87 8.17 25.60 0.21 -30.66 16 6 H 0.06 3.61 7.40 -2.91 -0.02 3.58 16 7 C 0.00 0.19 5.46 84.65 0.46 0.66 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 10 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.27 11.23 5.38 170.81 0.92 12.15 16 14 N -0.56 -19.20 2.01 -767.70 -1.54 -20.75 16 15 C 0.53 17.42 5.68 87.96 0.50 17.92 16 16 O -0.51 -21.73 17.67 -2.86 -0.05 -21.78 16 17 C -0.12 -2.28 3.64 -9.37 -0.03 -2.31 16 18 H 0.16 2.33 8.02 -2.39 -0.02 2.31 16 19 C -0.05 -0.82 5.22 -7.13 -0.04 -0.85 16 20 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.18 -3.85 8.51 26.30 0.22 -3.62 16 22 C -0.19 -3.68 8.52 25.79 0.22 -3.46 16 23 C -0.05 -0.64 4.57 -8.11 -0.04 -0.68 16 24 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 25 C -0.09 -0.73 6.63 34.04 0.23 -0.50 16 26 C -0.09 -1.57 0.86 -50.76 -0.04 -1.61 16 27 C -0.12 -1.52 9.12 71.98 0.66 -0.86 16 28 C 0.54 15.64 2.75 87.96 0.24 15.88 16 29 O -0.51 -17.48 16.43 -2.87 -0.05 -17.53 16 30 H 0.05 1.69 3.84 -2.39 -0.01 1.68 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 3.19 6.59 -2.39 -0.02 3.17 16 34 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 35 H 0.00 0.08 7.79 -2.39 -0.02 0.06 16 36 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.07 3.25 7.61 -2.39 -0.02 3.24 16 39 H 0.07 2.70 6.88 -2.39 -0.02 2.68 16 40 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.12 0.33 7.62 -2.39 -0.02 0.31 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.11 0.57 7.63 -2.39 -0.02 0.55 16 Total: -1.00 -77.53 359.63 2.62 -74.91 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.97 Total: 11.13 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.08 Total: 13.73 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.36 Total: -108.16 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.10 Total: -39.31 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.53 2.62 -74.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902068578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.051 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds