Wall clock time and date at job start Tue Mar 31 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46973 * 2 1 4 4 C 1.50699 * 109.46726 * 120.00010 * 2 1 3 5 5 O 1.21291 * 120.00155 * 93.34370 * 4 2 1 6 6 N 1.34784 * 120.00106 * 273.34286 * 4 2 1 7 7 C 1.46500 * 119.99809 * 5.39026 * 6 4 2 8 8 C 1.50695 * 109.46759 * 91.56295 * 7 6 4 9 9 H 1.07996 * 120.00467 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99748 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00127 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47357 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46872 * 300.00336 * 12 10 8 15 15 H 1.48504 * 109.46860 * 59.99883 * 12 10 8 16 16 C 1.39924 * 119.99822 * 185.39387 * 6 4 2 17 17 C 1.38871 * 120.07281 * 7.82765 * 16 6 4 18 18 C 1.38111 * 119.92707 * 179.76666 * 17 16 6 19 19 C 1.38280 * 120.07329 * 0.48357 * 18 17 16 20 20 C 1.38288 * 120.13798 * 359.76870 * 19 18 17 21 21 C 1.38113 * 120.07082 * 359.97438 * 20 19 18 22 22 N 1.46900 * 109.46964 * 239.99965 * 2 1 3 23 23 C 1.47483 * 110.99758 * 155.97380 * 22 2 1 24 24 C 1.53509 * 87.93124 * 221.29510 * 23 22 2 25 25 C 1.47481 * 110.99857 * 60.00369 * 22 2 1 26 26 H 1.08994 * 113.47838 * 23.93163 * 25 22 2 27 27 C 1.53002 * 113.47044 * 253.46835 * 25 22 2 28 28 O 1.42897 * 109.47109 * 294.99541 * 27 25 22 29 29 H 1.08994 * 109.46873 * 173.89282 * 1 2 3 30 30 H 1.09003 * 109.46833 * 293.89703 * 1 2 3 31 31 H 1.08997 * 109.46675 * 53.88497 * 1 2 3 32 32 H 1.09001 * 109.47403 * 331.56033 * 7 6 4 33 33 H 1.09000 * 109.46967 * 211.56101 * 7 6 4 34 34 H 0.97005 * 120.00264 * 359.97438 * 11 10 8 35 35 H 1.08002 * 120.03481 * 359.97438 * 17 16 6 36 36 H 1.08008 * 119.96496 * 180.21390 * 18 17 16 37 37 H 1.08002 * 119.93348 * 179.74713 * 19 18 17 38 38 H 1.08001 * 119.96095 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.03362 * 180.02562 * 21 20 19 40 40 H 1.08998 * 113.47672 * 336.06209 * 23 22 2 41 41 H 1.08995 * 113.47426 * 106.52957 * 23 22 2 42 42 H 1.08999 * 114.17020 * 272.37965 * 24 23 22 43 43 H 1.08998 * 114.34554 * 139.67840 * 24 23 22 44 44 H 1.08993 * 109.47559 * 55.00433 * 27 25 22 45 45 H 1.09006 * 109.46480 * 175.00655 * 27 25 22 46 46 H 0.96703 * 114.00093 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2922 -1.8942 1.1837 6 7 2.1927 -0.0303 2.3830 7 6 1.7684 1.3690 2.4729 8 6 0.3461 1.4318 2.9668 9 1 -0.1885 0.5206 3.1908 10 6 -0.2728 2.6527 3.1326 11 7 0.3780 3.7623 2.8593 12 14 -2.0362 2.7307 3.7440 13 1 -2.4663 4.1491 3.8353 14 1 -2.9209 2.0056 2.7971 15 1 -2.1234 2.0991 5.0853 16 6 2.7646 -0.6608 3.4936 17 6 3.3147 -1.9296 3.3668 18 6 3.8827 -2.5471 4.4638 19 6 3.8950 -1.9076 5.6898 20 6 3.3433 -0.6463 5.8205 21 6 2.7785 -0.0212 4.7261 22 7 2.0197 -0.6925 -1.1994 23 6 3.3815 -0.2466 -1.5482 24 6 2.9447 -0.2470 -3.0199 25 6 1.5468 -0.0237 -2.4259 26 1 1.3001 1.0278 -2.2795 27 6 0.4446 -0.7952 -3.1544 28 8 0.9680 -2.0357 -3.6330 29 1 -0.3633 -1.0218 -0.1093 30 1 -0.3633 0.4163 0.9396 31 1 -0.3632 0.6057 -0.8302 32 1 1.8320 1.8320 1.4882 33 1 2.4180 1.9017 3.1675 34 1 1.2936 3.7219 2.5414 35 1 3.3015 -2.4314 2.4105 36 1 4.3139 -3.5325 4.3651 37 1 4.3361 -2.3944 6.5471 38 1 3.3541 -0.1497 6.7795 39 1 2.3482 0.9640 4.8288 40 1 3.6244 0.7455 -1.1677 41 1 4.1511 -0.9850 -1.3235 42 1 3.0683 -1.2066 -3.5218 43 1 3.3222 0.5945 -3.6009 44 1 -0.3785 -0.9891 -2.4669 45 1 0.0834 -0.2044 -3.9963 46 1 0.3226 -2.5787 -4.1059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934022488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:58 Heat of formation + Delta-G solvation = 0.379535 kcal Electronic energy + Delta-G solvation = -28011.996932 eV Core-core repulsion = 24289.667759 eV Total energy + Delta-G solvation = -3722.329173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83881 -39.70862 -37.70278 -36.21294 -35.42662 -33.02409 -32.65070 -30.33063 -29.30423 -28.90328 -26.95616 -26.70437 -23.95965 -23.39393 -22.90066 -21.99640 -21.18019 -19.55278 -19.03867 -17.51650 -17.22474 -16.84353 -16.43753 -15.84536 -15.42555 -15.24558 -15.05779 -14.59380 -14.00723 -13.90715 -13.78729 -13.51740 -13.26201 -12.96705 -12.72293 -12.49438 -12.30909 -12.24936 -12.04579 -11.79057 -11.71708 -11.60350 -11.21425 -11.08440 -10.96865 -10.74191 -10.70495 -10.47346 -10.26212 -10.22619 -10.02084 -9.88416 -8.89206 -8.88613 -8.69528 -8.42751 -8.36026 -7.22613 -6.64647 -4.42281 1.83513 1.97291 3.18114 3.29092 3.31792 3.40667 3.49804 4.07282 4.28103 4.31360 4.46076 4.59971 4.78843 4.96222 5.06191 5.19352 5.28761 5.34249 5.38799 5.42444 5.43169 5.52690 5.62470 5.65738 5.68352 5.77551 5.93045 6.02001 6.07155 6.10339 6.12182 6.20927 6.34140 6.38816 6.41614 6.57911 6.65923 6.80898 6.91081 6.97472 7.08519 7.18638 7.22378 7.64287 7.69062 7.75842 7.92821 8.23674 8.50009 8.73899 9.26942 10.69896 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.005701 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.588882 B = 4909.855081 C = 7129.556855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 H 0.073 0.927 4 C 0.527 3.473 5 O -0.518 6.518 6 N -0.535 5.535 7 C 0.218 3.782 8 C -0.614 4.614 9 H 0.059 0.941 10 C 0.029 3.971 11 N -0.899 5.899 12 Si 1.065 2.935 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.171 3.829 17 C -0.175 4.175 18 C -0.108 4.108 19 C -0.161 4.161 20 C -0.105 4.105 21 C -0.145 4.145 22 N -0.432 5.432 23 C -0.007 4.007 24 C -0.130 4.130 25 C 0.023 3.977 26 H 0.089 0.911 27 C 0.095 3.905 28 O -0.559 6.559 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.171 0.829 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -5.547 -7.806 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 H 0.090 0.910 4 C 0.317 3.683 5 O -0.396 6.396 6 N -0.255 5.255 7 C 0.099 3.901 8 C -0.652 4.652 9 H 0.077 0.923 10 C -0.177 4.177 11 N -0.534 5.534 12 Si 0.892 3.108 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.075 3.925 17 C -0.194 4.194 18 C -0.126 4.126 19 C -0.180 4.180 20 C -0.123 4.123 21 C -0.166 4.166 22 N -0.156 5.156 23 C -0.136 4.136 24 C -0.167 4.167 25 C -0.087 4.087 26 H 0.107 0.893 27 C 0.016 3.984 28 O -0.363 6.363 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.188 0.812 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.223 -5.513 -7.081 9.245 hybrid contribution 0.715 -0.085 -0.331 0.792 sum 2.938 -5.597 -7.412 9.741 Atomic orbital electron populations 1.21964 0.91234 1.02359 1.05141 1.22210 0.98654 0.96272 0.90267 0.90964 1.20360 0.77099 0.86762 0.84104 1.90336 1.49600 1.15371 1.84266 1.45837 1.55706 1.14740 1.09203 1.19764 0.96835 0.75518 0.98005 1.22168 0.97464 0.95722 1.49838 0.92284 1.25792 1.05720 0.91560 0.94586 1.70850 1.12838 1.28965 1.40721 0.83571 0.74167 0.76294 0.76724 1.20524 1.21126 1.21115 1.18052 0.94351 0.92809 0.87284 1.22475 0.99737 0.94998 1.02206 1.21006 0.99455 0.99345 0.92842 1.20974 1.03523 0.96068 0.97482 1.20864 0.98431 0.95178 0.97869 1.21089 1.02424 1.01927 0.91128 1.69021 1.03483 1.44058 0.99020 1.23788 0.94032 0.99946 0.95848 1.23053 0.94495 1.03355 0.95813 1.23485 0.96024 0.96900 0.92248 0.89288 1.21895 0.94999 0.85291 0.96186 1.86532 1.40909 1.31979 1.76918 0.92140 0.87929 0.92426 0.94794 0.94841 0.92156 0.81227 0.86725 0.87080 0.86489 0.84640 0.91691 0.89655 0.87617 0.91128 0.92989 0.93619 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.15 37.16 0.30 -2.39 16 2 C 0.04 0.69 1.40 -68.86 -0.10 0.59 16 3 H 0.07 1.34 5.50 -51.93 -0.29 1.05 16 4 C 0.53 11.24 6.63 -10.98 -0.07 11.16 16 5 O -0.52 -11.87 13.15 5.55 0.07 -11.80 16 6 N -0.54 -11.71 2.68 -114.74 -0.31 -12.02 16 7 C 0.22 4.98 3.60 -5.20 -0.02 4.96 16 8 C -0.61 -15.23 6.96 -34.44 -0.24 -15.47 16 9 H 0.06 1.55 7.76 -52.49 -0.41 1.14 16 10 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 11 N -0.90 -24.12 13.65 55.43 0.76 -23.36 16 12 Si 1.07 23.13 29.90 -169.99 -5.08 18.04 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.29 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 C 0.17 3.66 6.48 -83.70 -0.54 3.12 16 17 C -0.17 -3.52 8.98 -39.39 -0.35 -3.88 16 18 C -0.11 -1.86 10.04 -39.61 -0.40 -2.25 16 19 C -0.16 -2.61 10.04 -39.55 -0.40 -3.00 16 20 C -0.10 -1.81 10.04 -39.61 -0.40 -2.21 16 21 C -0.15 -2.94 9.10 -39.39 -0.36 -3.30 16 22 N -0.43 -7.20 5.57 -229.89 -1.28 -8.49 16 23 C -0.01 -0.11 7.56 -7.54 -0.06 -0.16 16 24 C -0.13 -1.61 7.83 -26.20 -0.21 -1.81 16 25 C 0.02 0.31 2.57 -71.42 -0.18 0.12 16 26 H 0.09 1.13 7.65 -51.93 -0.40 0.73 16 27 C 0.09 1.11 7.22 37.16 0.27 1.38 16 28 O -0.56 -6.76 12.11 -35.23 -0.43 -7.18 16 29 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 30 H 0.10 2.13 5.65 -51.93 -0.29 1.83 16 31 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 32 H 0.03 0.77 5.59 -51.93 -0.29 0.48 16 33 H 0.03 0.80 6.54 -51.93 -0.34 0.46 16 34 H 0.27 7.09 7.22 -40.82 -0.29 6.79 16 35 H 0.17 3.65 4.72 -55.20 -0.26 3.38 16 36 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.14 2.91 6.23 -52.49 -0.33 2.58 16 40 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.11 1.40 6.91 -51.93 -0.36 1.04 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.64 7.05 -51.93 -0.37 0.28 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.37 2.77 9.12 45.56 0.42 3.19 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -29.94 361.49 -9.37 -39.31 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.71 Total: 12.51 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.85 Total: -12.47 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.83 Total: -43.86 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.35 Total: -18.98 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.08 Total: 18.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.94 -9.37 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934022488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.693 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds