Wall clock time and date at job start Tue Mar 31 2020 12:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46973 * 2 1 4 4 C 1.50699 * 109.46726 * 120.00010 * 2 1 3 5 5 O 1.21291 * 120.00155 * 93.34370 * 4 2 1 6 6 N 1.34784 * 120.00106 * 273.34286 * 4 2 1 7 7 C 1.46500 * 119.99809 * 5.39026 * 6 4 2 8 8 C 1.50695 * 109.46759 * 91.56295 * 7 6 4 9 9 H 1.07996 * 120.00467 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99748 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00127 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47357 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46872 * 300.00336 * 12 10 8 15 15 H 1.48504 * 109.46860 * 59.99883 * 12 10 8 16 16 C 1.39924 * 119.99822 * 185.39387 * 6 4 2 17 17 C 1.38871 * 120.07281 * 7.82765 * 16 6 4 18 18 C 1.38111 * 119.92707 * 179.76666 * 17 16 6 19 19 C 1.38280 * 120.07329 * 0.48357 * 18 17 16 20 20 C 1.38288 * 120.13798 * 359.76870 * 19 18 17 21 21 C 1.38113 * 120.07082 * 359.97438 * 20 19 18 22 22 N 1.46900 * 109.46964 * 239.99965 * 2 1 3 23 23 C 1.47483 * 110.99758 * 155.97380 * 22 2 1 24 24 C 1.53509 * 87.93124 * 221.29510 * 23 22 2 25 25 C 1.47481 * 110.99857 * 60.00369 * 22 2 1 26 26 H 1.08994 * 113.47838 * 23.93163 * 25 22 2 27 27 C 1.53002 * 113.47044 * 253.46835 * 25 22 2 28 28 O 1.42897 * 109.47109 * 294.99541 * 27 25 22 29 29 H 1.08994 * 109.46873 * 173.89282 * 1 2 3 30 30 H 1.09003 * 109.46833 * 293.89703 * 1 2 3 31 31 H 1.08997 * 109.46675 * 53.88497 * 1 2 3 32 32 H 1.09001 * 109.47403 * 331.56033 * 7 6 4 33 33 H 1.09000 * 109.46967 * 211.56101 * 7 6 4 34 34 H 0.97005 * 120.00264 * 359.97438 * 11 10 8 35 35 H 1.08002 * 120.03481 * 359.97438 * 17 16 6 36 36 H 1.08008 * 119.96496 * 180.21390 * 18 17 16 37 37 H 1.08002 * 119.93348 * 179.74713 * 19 18 17 38 38 H 1.08001 * 119.96095 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.03362 * 180.02562 * 21 20 19 40 40 H 1.08998 * 113.47672 * 336.06209 * 23 22 2 41 41 H 1.08995 * 113.47426 * 106.52957 * 23 22 2 42 42 H 1.08999 * 114.17020 * 272.37965 * 24 23 22 43 43 H 1.08998 * 114.34554 * 139.67840 * 24 23 22 44 44 H 1.08993 * 109.47559 * 55.00433 * 27 25 22 45 45 H 1.09006 * 109.46480 * 175.00655 * 27 25 22 46 46 H 0.96703 * 114.00093 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2922 -1.8942 1.1837 6 7 2.1927 -0.0303 2.3830 7 6 1.7684 1.3690 2.4729 8 6 0.3461 1.4318 2.9668 9 1 -0.1885 0.5206 3.1908 10 6 -0.2728 2.6527 3.1326 11 7 0.3780 3.7623 2.8593 12 14 -2.0362 2.7307 3.7440 13 1 -2.4663 4.1491 3.8353 14 1 -2.9209 2.0056 2.7971 15 1 -2.1234 2.0991 5.0853 16 6 2.7646 -0.6608 3.4936 17 6 3.3147 -1.9296 3.3668 18 6 3.8827 -2.5471 4.4638 19 6 3.8950 -1.9076 5.6898 20 6 3.3433 -0.6463 5.8205 21 6 2.7785 -0.0212 4.7261 22 7 2.0197 -0.6925 -1.1994 23 6 3.3815 -0.2466 -1.5482 24 6 2.9447 -0.2470 -3.0199 25 6 1.5468 -0.0237 -2.4259 26 1 1.3001 1.0278 -2.2795 27 6 0.4446 -0.7952 -3.1544 28 8 0.9680 -2.0357 -3.6330 29 1 -0.3633 -1.0218 -0.1093 30 1 -0.3633 0.4163 0.9396 31 1 -0.3632 0.6057 -0.8302 32 1 1.8320 1.8320 1.4882 33 1 2.4180 1.9017 3.1675 34 1 1.2936 3.7219 2.5414 35 1 3.3015 -2.4314 2.4105 36 1 4.3139 -3.5325 4.3651 37 1 4.3361 -2.3944 6.5471 38 1 3.3541 -0.1497 6.7795 39 1 2.3482 0.9640 4.8288 40 1 3.6244 0.7455 -1.1677 41 1 4.1511 -0.9850 -1.3235 42 1 3.0683 -1.2066 -3.5218 43 1 3.3222 0.5945 -3.6009 44 1 -0.3785 -0.9891 -2.4669 45 1 0.0834 -0.2044 -3.9963 46 1 0.3226 -2.5787 -4.1059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934022488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:57 Heat of formation + Delta-G solvation = -20.535765 kcal Electronic energy + Delta-G solvation = -28012.903887 eV Core-core repulsion = 24289.667759 eV Total energy + Delta-G solvation = -3723.236129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27156 -41.06040 -39.18539 -37.17588 -37.15127 -34.86263 -34.10645 -31.80534 -30.81816 -29.95597 -28.78465 -27.93919 -25.44197 -25.27652 -23.97139 -23.49185 -22.64458 -20.65174 -20.61657 -19.21563 -18.50640 -18.20677 -18.11271 -17.17727 -16.71743 -16.55303 -16.32568 -15.98840 -15.66723 -15.44901 -15.23848 -15.09805 -14.62731 -14.49615 -14.14546 -13.86536 -13.74431 -13.64133 -13.48182 -13.23707 -13.15615 -12.95958 -12.75866 -12.62012 -12.53810 -12.10864 -11.99688 -11.98281 -11.90485 -11.72427 -11.27838 -10.80122 -10.70477 -10.62407 -10.35766 -9.85455 -9.80605 -8.90877 -8.61906 -6.46398 0.34133 0.49947 1.52159 1.56923 1.58668 1.77602 1.86712 2.49971 2.85995 2.96878 3.07634 3.28266 3.39176 3.62683 3.73272 3.86169 3.95908 4.07104 4.13856 4.25391 4.27479 4.32436 4.44107 4.45822 4.52365 4.57802 4.60198 4.63253 4.65811 4.68156 4.75785 4.79295 4.83901 4.93524 5.16108 5.19238 5.26612 5.32491 5.38320 5.53791 5.63194 5.68751 5.70344 5.96427 6.01765 6.23505 6.37913 6.50065 7.02297 7.06954 7.28451 8.66194 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.005701 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.588882 B = 4909.855081 C = 7129.556855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 H 0.067 0.933 4 C 0.519 3.481 5 O -0.540 6.540 6 N -0.541 5.541 7 C 0.233 3.767 8 C -0.607 4.607 9 H 0.040 0.960 10 C -0.007 4.007 11 N -0.920 5.920 12 Si 1.103 2.897 13 H -0.280 1.280 14 H -0.270 1.270 15 H -0.279 1.279 16 C 0.137 3.863 17 C -0.192 4.192 18 C -0.103 4.103 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.165 4.165 22 N -0.454 5.454 23 C -0.014 4.014 24 C -0.110 4.110 25 C 0.018 3.982 26 H 0.099 0.901 27 C 0.096 3.904 28 O -0.579 6.579 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -6.228 -7.797 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 H 0.085 0.915 4 C 0.310 3.690 5 O -0.419 6.419 6 N -0.261 5.261 7 C 0.113 3.887 8 C -0.645 4.645 9 H 0.059 0.941 10 C -0.208 4.208 11 N -0.556 5.556 12 Si 0.925 3.075 13 H -0.205 1.205 14 H -0.195 1.195 15 H -0.204 1.204 16 C 0.042 3.958 17 C -0.212 4.212 18 C -0.122 4.122 19 C -0.165 4.165 20 C -0.119 4.119 21 C -0.186 4.186 22 N -0.178 5.178 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.091 4.091 26 H 0.116 0.884 27 C 0.017 3.983 28 O -0.386 6.386 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.200 -6.217 -7.082 9.678 hybrid contribution 0.822 0.015 -0.280 0.869 sum 3.022 -6.202 -7.362 10.090 Atomic orbital electron populations 1.21836 0.90994 1.02303 1.04528 1.22107 0.98649 0.95658 0.90110 0.91503 1.20942 0.76639 0.86772 0.84697 1.90321 1.50653 1.16232 1.84734 1.45856 1.56020 1.14283 1.09961 1.19459 0.95595 0.76298 0.97337 1.22168 0.98125 0.94885 1.49291 0.94145 1.26872 1.08415 0.91234 0.94263 1.70941 1.12752 1.29533 1.42379 0.83082 0.71042 0.76412 0.76932 1.20494 1.19490 1.20435 1.18400 0.95917 0.93849 0.87655 1.22427 1.01140 0.94803 1.02853 1.21391 0.98097 1.00417 0.92272 1.21430 1.01651 0.95182 0.98285 1.21248 0.96976 0.95696 0.97975 1.21075 1.04026 1.01462 0.92031 1.69065 1.04791 1.44693 0.99252 1.23864 0.93005 0.99607 0.97850 1.22945 0.93409 1.04107 0.94249 1.23685 0.97332 0.97471 0.90641 0.88371 1.21909 0.93850 0.85565 0.96935 1.86478 1.42295 1.32514 1.77330 0.92558 0.90869 0.89763 0.94776 0.96213 0.92994 0.82896 0.83615 0.82715 0.83533 0.86860 0.91405 0.90954 0.88239 0.88358 0.93912 0.90534 0.75955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.15 71.98 0.59 -4.49 16 2 C 0.05 1.75 1.40 44.17 0.06 1.81 16 3 H 0.07 2.56 5.50 -2.39 -0.01 2.55 16 4 C 0.52 23.09 6.63 87.66 0.58 23.67 16 5 O -0.54 -25.82 13.15 -3.06 -0.04 -25.86 16 6 N -0.54 -24.85 2.68 -635.30 -1.70 -26.55 16 7 C 0.23 11.15 3.60 85.63 0.31 11.46 16 8 C -0.61 -31.10 6.96 25.60 0.18 -30.92 16 9 H 0.04 2.20 7.76 -2.91 -0.02 2.18 16 10 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 11 N -0.92 -50.22 13.65 21.45 0.29 -49.93 16 12 Si 1.10 46.63 29.90 68.60 2.05 48.68 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.14 6.06 6.48 38.15 0.25 6.31 16 17 C -0.19 -7.88 8.98 22.39 0.20 -7.68 16 18 C -0.10 -3.35 10.04 22.25 0.22 -3.13 16 19 C -0.15 -4.26 10.04 22.29 0.22 -4.03 16 20 C -0.10 -3.29 10.04 22.25 0.22 -3.07 16 21 C -0.17 -6.82 9.10 22.39 0.20 -6.62 16 22 N -0.45 -15.19 5.57 -881.23 -4.91 -20.10 16 23 C -0.01 -0.42 7.56 83.58 0.63 0.21 16 24 C -0.11 -2.54 7.83 30.94 0.24 -2.30 16 25 C 0.02 0.45 2.57 42.19 0.11 0.56 16 26 H 0.10 2.31 7.65 -2.39 -0.02 2.29 16 27 C 0.10 2.06 7.22 71.98 0.52 2.58 16 28 O -0.58 -13.05 12.11 -148.98 -1.80 -14.85 16 29 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 30 H 0.07 3.12 5.65 -2.39 -0.01 3.10 16 31 H 0.08 2.55 6.91 -2.39 -0.02 2.53 16 32 H 0.03 1.63 5.59 -2.39 -0.01 1.62 16 33 H 0.02 1.00 6.54 -2.39 -0.02 0.98 16 34 H 0.26 14.19 7.22 -92.70 -0.67 13.52 16 35 H 0.15 6.82 4.72 -45.95 -0.22 6.60 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.11 5.10 6.23 -2.91 -0.02 5.08 16 40 H 0.07 1.94 7.54 -2.39 -0.02 1.92 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.10 2.48 6.91 -2.39 -0.02 2.46 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.00 7.05 -2.39 -0.02 0.98 16 45 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.39 5.15 9.12 -74.06 -0.68 4.47 16 Total: -1.00 -66.73 361.49 -0.88 -67.61 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.23 Total: 36.51 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 5.00 Total: -15.51 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -6.32 Total: -96.58 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.84 Total: -40.71 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.05 Total: 48.68 kcal Total: -66.73 -0.88 -67.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934022488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.077 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds