Wall clock time and date at job start Tue Mar 31 2020 12:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46761 * 2 1 4 4 C 1.34780 * 120.00126 * 92.39270 * 3 2 1 5 5 O 1.21688 * 119.99978 * 184.66270 * 4 3 2 6 6 C 1.46657 * 119.99746 * 4.66288 * 4 3 2 7 7 C 1.36545 * 125.98758 * 337.50873 * 6 4 3 8 8 C 1.40370 * 106.70459 * 180.02562 * 7 6 4 9 9 C 1.35129 * 107.11510 * 0.02562 * 8 7 6 10 10 C 1.50699 * 125.60946 * 180.02562 * 9 8 7 11 11 H 1.08996 * 115.55812 * 25.66813 * 10 9 8 12 12 C 1.53000 * 117.51349 * 171.36922 * 10 9 8 13 13 C 1.53000 * 60.00390 * 107.47713 * 12 10 9 14 14 H 1.09000 * 117.50373 * 252.51339 * 13 12 10 15 15 C 1.52997 * 117.50104 * 107.48658 * 13 12 10 16 16 O 1.33930 * 108.76875 * 0.25891 * 9 8 7 17 17 C 1.46498 * 119.99999 * 272.38435 * 3 2 1 18 18 C 1.53947 * 113.74545 * 223.30235 * 17 3 2 19 19 N 1.47813 * 86.04001 * 222.08650 * 18 17 3 20 20 C 1.36935 * 134.45864 * 204.64404 * 19 18 17 21 21 H 1.07997 * 120.00260 * 179.86107 * 20 19 18 22 22 C 1.38816 * 119.99856 * 359.86531 * 20 19 18 23 23 N 1.31617 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46969 * 89.99957 * 24 22 20 26 26 H 1.48493 * 109.47427 * 209.99989 * 24 22 20 27 27 H 1.48504 * 109.47096 * 330.00443 * 24 22 20 28 28 C 1.47582 * 91.05007 * 24.54808 * 19 18 17 29 29 H 1.08998 * 109.46726 * 299.99436 * 1 2 3 30 30 H 1.08997 * 109.47181 * 60.00271 * 1 2 3 31 31 H 1.09000 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46987 * 239.99865 * 2 1 3 33 33 H 1.08999 * 109.47469 * 120.00187 * 2 1 3 34 34 H 1.07997 * 126.64859 * 359.97438 * 7 6 4 35 35 H 1.08004 * 126.43791 * 180.02562 * 8 7 6 36 36 H 1.09000 * 117.50143 * 359.97438 * 12 10 9 37 37 H 1.08998 * 117.50187 * 214.96886 * 12 10 9 38 38 H 1.09001 * 109.47014 * 351.38043 * 15 13 12 39 39 H 1.08998 * 109.47091 * 111.38510 * 15 13 12 40 40 H 1.08999 * 109.47356 * 231.38796 * 15 13 12 41 41 H 1.08999 * 112.94733 * 354.89589 * 17 3 2 42 42 H 1.09004 * 113.76766 * 336.35161 * 18 17 3 43 43 H 1.08999 * 113.77293 * 107.74830 * 18 17 3 44 44 H 0.97001 * 120.00317 * 180.02562 * 23 22 20 45 45 H 1.08999 * 113.77254 * 221.15336 * 28 19 18 46 46 H 1.08993 * 113.76871 * 89.75452 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2888 2.0004 1.1662 5 8 2.6127 3.1733 1.1715 6 6 2.1928 1.2604 2.4287 7 6 1.4591 0.1287 2.6417 8 6 1.6577 -0.2345 3.9829 9 6 2.4929 0.6801 4.5231 10 6 2.9839 0.6866 5.9479 11 1 3.0044 -0.2844 6.4426 12 6 4.0809 1.6887 6.3128 13 6 2.6491 1.9092 6.8048 14 1 2.0739 2.7088 6.3380 15 6 2.3686 1.6751 8.2906 16 8 2.8084 1.5826 3.5852 17 6 2.2126 2.0894 -1.2676 18 6 3.5214 2.8975 -1.3319 19 7 2.7153 3.9575 -1.9735 20 6 2.9967 4.9967 -2.8196 21 1 2.2041 5.6483 -3.1567 22 6 4.3005 5.2126 -3.2441 23 7 5.2663 4.4181 -2.8338 24 14 4.6843 6.6298 -4.3990 25 1 5.0056 7.8426 -3.6045 26 1 5.8473 6.2734 -5.2506 27 1 3.5047 6.9002 -5.2598 28 6 1.4859 3.4448 -1.3382 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.8443 -0.3865 1.9185 35 1 1.2243 -1.0851 4.4881 36 1 4.4481 2.3432 5.5223 37 1 4.8232 1.3770 7.0476 38 1 3.2442 1.2259 8.7592 39 1 2.1465 2.6271 8.7728 40 1 1.5154 1.0055 8.3982 41 1 2.0450 1.4557 -2.1385 42 1 3.9145 3.1757 -0.3540 43 1 4.2757 2.4608 -1.9864 44 1 6.1775 4.5691 -3.1301 45 1 0.6180 3.4441 -1.9976 46 1 1.2797 3.8840 -0.3622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950064351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:23 Heat of formation + Delta-G solvation = 95.049212 kcal Electronic energy + Delta-G solvation = -27027.402986 eV Core-core repulsion = 23309.178999 eV Total energy + Delta-G solvation = -3718.223988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.81471 -39.95886 -38.00048 -36.75864 -35.87738 -33.04791 -32.05039 -30.45829 -30.29793 -28.54768 -27.21426 -24.68174 -24.61915 -23.35122 -22.93161 -21.98188 -21.20480 -20.53199 -20.21685 -18.96860 -17.19068 -16.71369 -16.44117 -16.28135 -15.64823 -15.00621 -14.87437 -14.62195 -14.54394 -14.42677 -13.73178 -13.60298 -13.31676 -13.10191 -12.87411 -12.59535 -12.41707 -12.31431 -12.25379 -12.04226 -11.76741 -11.65576 -11.44856 -11.24508 -11.15028 -10.88248 -10.80821 -10.58103 -10.38672 -10.14203 -9.93822 -9.87249 -9.48618 -9.40389 -8.61699 -8.38294 -8.13670 -6.72238 -5.65742 -2.96644 1.13742 2.21718 2.31973 3.37041 3.43986 3.46761 3.51156 3.52542 3.58993 4.15072 4.44142 4.51367 4.56430 4.58950 4.79482 4.91769 4.95724 4.98826 5.12981 5.29489 5.31090 5.35322 5.41021 5.46151 5.52919 5.58645 5.64854 5.68582 5.69446 5.70876 5.75257 5.79782 5.81044 5.90028 5.96570 6.16579 6.27629 6.37206 6.60058 6.63701 6.93254 7.00220 7.36237 7.58322 7.65163 7.73042 8.07906 8.45836 9.15164 9.81381 10.72086 11.51668 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003153 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.067344 B = 8877.231041 C =10091.661984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 N -0.583 5.583 4 C 0.584 3.416 5 O -0.496 6.496 6 C -0.046 4.046 7 C -0.181 4.181 8 C -0.213 4.213 9 C 0.037 3.963 10 C -0.085 4.085 11 H 0.136 0.864 12 C -0.164 4.164 13 C -0.139 4.139 14 H 0.109 0.891 15 C -0.122 4.122 16 O -0.141 6.141 17 C 0.093 3.907 18 C 0.155 3.845 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.111 3.889 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.153 0.847 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.252 0.748 45 H 0.038 0.962 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -15.601 18.000 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.049 4.049 3 N -0.317 5.317 4 C 0.370 3.630 5 O -0.371 6.371 6 C -0.100 4.100 7 C -0.201 4.201 8 C -0.233 4.233 9 C -0.016 4.016 10 C -0.103 4.103 11 H 0.154 0.846 12 C -0.201 4.201 13 C -0.158 4.158 14 H 0.127 0.873 15 C -0.179 4.179 16 O -0.035 6.035 17 C -0.010 4.010 18 C 0.029 3.971 19 N -0.329 5.329 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.195 0.805 35 H 0.170 0.830 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.100 -14.481 17.800 24.334 hybrid contribution 0.101 0.546 -0.597 0.816 sum -7.999 -13.935 17.203 23.539 Atomic orbital electron populations 1.22333 0.95916 1.02220 1.03279 1.22285 0.94517 0.83539 1.04554 1.47747 1.64868 1.13667 1.05443 1.16528 0.79168 0.86032 0.81292 1.90949 1.45168 1.14957 1.85977 1.21980 1.02006 0.98698 0.87302 1.22815 1.02982 0.96720 0.97539 1.21445 1.03874 1.02902 0.95031 1.21740 0.99318 0.90273 0.90235 1.20637 1.05490 0.96863 0.87303 0.84601 1.23239 0.91635 1.01503 1.03753 1.22541 0.99195 0.98429 0.95590 0.87287 1.21385 1.01801 1.02198 0.92541 1.84043 1.56934 1.45067 1.17413 1.24206 1.01915 0.92290 0.82561 1.22738 0.91617 0.85710 0.97038 1.45679 1.03095 1.33137 1.51004 1.18991 0.93229 1.04342 1.17866 0.90267 1.24786 0.95484 0.99413 1.00928 1.69830 0.99855 1.39105 1.47951 0.86113 0.77560 0.81868 0.80186 1.21675 1.21700 1.20668 1.22952 0.91389 0.90654 0.96593 0.92023 0.91388 0.91384 0.89957 0.88547 0.80512 0.82958 0.87729 0.87742 0.92251 0.91667 0.91912 0.87271 0.92947 0.91262 0.93752 0.94366 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.01 37.16 0.33 -1.35 16 2 C 0.07 0.84 5.62 -4.04 -0.02 0.82 16 3 N -0.58 -9.66 2.73 -169.43 -0.46 -10.13 16 4 C 0.58 11.10 7.06 -12.86 -0.09 11.01 16 5 O -0.50 -11.85 12.82 2.68 0.03 -11.82 16 6 C -0.05 -0.74 6.89 -36.80 -0.25 -1.00 16 7 C -0.18 -2.17 8.05 -39.39 -0.32 -2.49 16 8 C -0.21 -2.31 10.77 -39.89 -0.43 -2.74 16 9 C 0.04 0.45 6.80 -35.41 -0.24 0.21 16 10 C -0.09 -0.78 5.96 -91.77 -0.55 -1.33 16 11 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.16 -1.51 9.81 -26.73 -0.26 -1.78 16 13 C -0.14 -1.21 6.11 -90.62 -0.55 -1.77 16 14 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -0.76 10.19 37.16 0.38 -0.38 16 16 O -0.14 -2.29 10.36 2.48 0.03 -2.26 16 17 C 0.09 1.84 4.60 -70.13 -0.32 1.52 16 18 C 0.15 3.99 6.79 -2.84 -0.02 3.97 16 19 N -0.60 -16.72 3.70 -177.85 -0.66 -17.38 16 20 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 21 H 0.08 2.27 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.92 -28.70 11.39 55.49 0.63 -28.07 16 24 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.11 2.52 8.27 -2.96 -0.02 2.50 16 29 H 0.06 0.61 6.93 -51.93 -0.36 0.25 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.10 0.99 4.34 -51.93 -0.23 0.76 16 34 H 0.18 1.67 3.55 -52.49 -0.19 1.48 16 35 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.10 1.18 7.96 -51.93 -0.41 0.77 16 37 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 38 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 1.94 8.01 -51.93 -0.42 1.53 16 42 H 0.05 1.49 5.73 -51.93 -0.30 1.19 16 43 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 1.22 6.27 -51.93 -0.33 0.89 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.21 369.10 -9.29 -45.49 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.77 Total: 0.26 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.63 Total: 0.22 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.49 Total: -55.57 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.06 Total: -14.08 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.21 -9.29 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950064351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.544 kcal (2) G-P(sol) polarization free energy of solvation -36.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds