Wall clock time and date at job start Tue Mar 31 2020 13:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46955 * 2 1 4 4 C 1.35902 * 116.99636 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05657 * 0.02562 * 4 3 2 6 6 C 1.38129 * 119.94281 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05582 * 359.73919 * 6 5 4 8 8 C 1.38245 * 120.10858 * 0.51783 * 7 6 5 9 9 C 1.50707 * 119.96984 * 179.76362 * 8 7 6 10 10 C 1.50697 * 109.46941 * 269.72104 * 9 8 7 11 11 O 1.21277 * 120.00217 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47434 * 125.64804 * 359.97438 * 12 10 9 14 14 C 1.54904 * 104.83221 * 155.91720 * 13 12 10 15 15 C 1.55160 * 101.58416 * 37.00719 * 14 13 12 16 16 H 1.09000 * 110.71813 * 83.04135 * 15 14 13 17 17 N 1.46496 * 110.71990 * 206.13427 * 15 14 13 18 18 C 1.36939 * 120.00077 * 273.54634 * 17 15 14 19 19 H 1.07997 * 119.99728 * 359.72656 * 18 17 15 20 20 C 1.38815 * 119.99845 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99884 * 359.72042 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.72678 * 20 18 17 23 23 H 1.48498 * 109.47416 * 59.99578 * 22 20 18 24 24 H 1.48508 * 109.46609 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46903 * 299.99163 * 22 20 18 26 26 C 1.47023 * 125.64927 * 180.02562 * 12 10 9 27 27 C 1.38166 * 120.05873 * 359.48369 * 8 7 6 28 28 H 1.09005 * 109.47427 * 59.99536 * 1 2 3 29 29 H 1.09003 * 109.47715 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47295 * 299.99930 * 1 2 3 31 31 H 1.08998 * 109.46557 * 240.00132 * 2 1 3 32 32 H 1.08998 * 109.46619 * 120.00228 * 2 1 3 33 33 H 1.07993 * 120.02707 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.96826 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.94392 * 180.27984 * 7 6 5 36 36 H 1.08999 * 109.46684 * 149.71975 * 9 8 7 37 37 H 1.09002 * 109.46677 * 29.72309 * 9 8 7 38 38 H 1.08995 * 110.36490 * 37.07482 * 13 12 10 39 39 H 1.09000 * 110.46055 * 274.80167 * 13 12 10 40 40 H 1.09008 * 111.00525 * 278.93707 * 14 13 12 41 41 H 1.08994 * 111.04107 * 155.09646 * 14 13 12 42 42 H 0.97004 * 120.00009 * 93.55251 * 17 15 14 43 43 H 0.97000 * 119.99517 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.88202 * 61.59698 * 26 12 10 45 45 H 1.09004 * 109.88287 * 300.43103 * 26 12 10 46 46 H 1.07996 * 120.02650 * 180.23438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1998 0.4257 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8877 -0.0049 8 6 5.2551 2.9849 0.0005 9 6 5.8332 4.3767 -0.0001 10 6 6.0258 4.8411 1.4206 11 8 5.7230 4.1138 2.3427 12 7 6.5345 6.0647 1.6664 13 6 6.9436 7.0462 0.6451 14 6 6.8525 8.4195 1.3560 15 6 7.3371 8.0628 2.7861 16 1 8.4260 8.0607 2.8349 17 7 6.7779 8.9931 3.7700 18 6 7.4176 10.1743 4.0361 19 1 8.3366 10.4180 3.5240 20 6 6.8879 11.0556 4.9688 21 7 5.7681 10.7583 5.5932 22 14 7.7646 12.6634 5.3374 23 1 7.8608 13.4710 4.0950 24 1 7.0003 13.4203 6.3614 25 1 9.1290 12.3772 5.8489 26 6 6.7745 6.6414 2.9973 27 6 3.8850 2.8066 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.7885 -0.5728 0.0005 34 1 6.2280 -0.2462 0.0001 35 1 7.1668 2.0292 -0.0094 36 1 5.1506 5.0533 -0.5142 37 1 6.7945 4.3706 -0.5139 38 1 6.2636 7.0137 -0.2061 39 1 7.9663 6.8544 0.3203 40 1 5.8253 8.7842 1.3712 41 1 7.5161 9.1469 0.8886 42 1 5.9546 8.7724 4.2329 43 1 5.3978 11.3743 6.2446 44 1 7.4981 6.0331 3.5399 45 1 5.8384 6.6921 3.5536 46 1 3.2284 3.6640 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970816871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:58 Heat of formation + Delta-G solvation = -56.873739 kcal Electronic energy + Delta-G solvation = -25674.322703 eV Core-core repulsion = 21949.510841 eV Total energy + Delta-G solvation = -3724.811861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.41142 -40.79425 -39.01521 -38.20863 -35.90543 -33.83000 -33.14762 -32.89992 -31.01961 -30.56069 -29.78195 -28.19044 -25.64084 -24.65191 -23.98567 -23.51296 -22.05215 -21.51057 -20.28694 -19.32228 -18.76889 -18.14155 -17.41300 -17.06101 -17.04122 -16.91213 -16.51658 -16.21005 -15.60440 -15.38312 -15.03226 -14.73555 -14.49433 -14.30696 -14.25729 -14.07193 -13.74692 -13.44080 -13.32901 -13.13530 -12.94007 -12.87373 -12.81404 -12.66018 -12.57074 -12.42529 -12.34631 -12.12717 -11.77668 -11.70920 -11.65815 -11.64642 -10.97954 -10.92126 -9.80544 -9.66342 -9.14278 -9.04301 -7.94415 -5.25042 0.30641 0.50561 1.49195 1.52467 1.58355 1.62592 1.96915 2.26449 2.57567 2.81391 3.37162 3.58974 3.68925 3.78493 3.85643 3.95225 4.03574 4.07399 4.10526 4.15154 4.25994 4.29723 4.34762 4.39226 4.43925 4.49831 4.54172 4.59257 4.70172 4.72955 4.86850 4.90106 4.91597 5.03547 5.07352 5.18498 5.21274 5.28810 5.34594 5.46331 5.47301 5.54512 5.61459 5.83455 6.25782 6.47723 6.56604 7.15048 7.31810 8.04224 8.27669 9.29039 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.002173 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.142841 B =12879.809584 C =13579.599344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.339 6.339 4 C 0.112 3.888 5 C -0.214 4.214 6 C -0.083 4.083 7 C -0.153 4.153 8 C -0.037 4.037 9 C -0.087 4.087 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.614 5.614 13 C 0.104 3.896 14 C -0.146 4.146 15 C 0.165 3.835 16 H 0.071 0.929 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.085 0.915 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.274 1.274 24 H -0.301 1.301 25 H -0.277 1.277 26 C 0.110 3.890 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.039 0.961 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 -22.174 -19.779 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.254 6.254 4 C 0.067 3.933 5 C -0.233 4.233 6 C -0.100 4.100 7 C -0.171 4.171 8 C -0.038 4.038 9 C -0.126 4.126 10 C 0.313 3.687 11 O -0.467 6.467 12 N -0.348 5.348 13 C -0.017 4.017 14 C -0.187 4.187 15 C 0.055 3.945 16 H 0.089 0.911 17 N -0.373 5.373 18 C -0.370 4.370 19 H 0.103 0.897 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.806 3.194 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.203 1.203 26 C -0.014 4.014 27 C -0.181 4.181 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.983 -22.351 -19.311 29.604 hybrid contribution -0.280 0.863 1.195 1.500 sum -2.264 -21.488 -18.116 28.197 Atomic orbital electron populations 1.21816 0.91662 1.04231 1.03018 1.23055 0.96814 0.80757 1.02267 1.86053 1.19066 1.31464 1.88797 1.19115 0.82744 0.94468 0.96954 1.21495 0.94658 0.98390 1.08723 1.21259 0.94566 0.97855 0.96357 1.21211 1.00487 0.92189 1.03218 1.19273 0.92219 0.95027 0.97279 1.20717 1.05770 0.94020 0.92137 1.20903 0.75949 0.79462 0.92398 1.90709 1.52398 1.55267 1.48323 1.48588 1.62600 1.15333 1.08268 1.22603 1.02324 0.85950 0.90848 1.23369 1.01822 0.96717 0.96814 1.21409 0.96831 0.86622 0.89629 0.91094 1.42573 1.28386 1.19156 1.47163 1.19613 1.05000 0.95010 1.17378 0.89688 1.25645 0.98672 1.02800 1.00021 1.69839 1.22747 1.38533 1.31209 0.85162 0.77505 0.79385 0.77389 1.19950 1.22734 1.20309 1.21945 0.99408 0.94824 0.85254 1.20399 0.95169 0.95335 1.07212 0.91718 0.87902 0.92454 0.90540 0.91571 0.83506 0.83014 0.84265 0.85699 0.84186 0.87767 0.88240 0.92782 0.89090 0.79779 0.94112 0.92193 0.94276 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.68 5.46 71.98 0.39 1.07 16 3 O -0.34 -8.01 10.14 -92.44 -0.94 -8.95 16 4 C 0.11 2.75 6.69 22.51 0.15 2.90 16 5 C -0.21 -4.24 9.04 22.37 0.20 -4.04 16 6 C -0.08 -1.52 10.04 22.26 0.22 -1.30 16 7 C -0.15 -3.14 9.70 22.28 0.22 -2.92 16 8 C -0.04 -0.87 4.37 -19.88 -0.09 -0.96 16 9 C -0.09 -1.69 4.84 29.10 0.14 -1.55 16 10 C 0.52 15.56 7.84 87.66 0.69 16.25 16 11 O -0.59 -23.40 16.36 -3.02 -0.05 -23.45 16 12 N -0.61 -17.83 3.33 -811.79 -2.70 -20.53 16 13 C 0.10 2.20 6.69 86.85 0.58 2.78 16 14 C -0.15 -4.36 6.77 31.99 0.22 -4.14 16 15 C 0.16 6.17 3.59 46.18 0.17 6.34 16 16 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 17 N -0.73 -36.48 5.25 -317.33 -1.67 -38.14 16 18 C -0.24 -12.82 9.98 84.03 0.84 -11.98 16 19 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 22 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.11 4.00 6.62 86.73 0.57 4.58 16 27 C -0.16 -4.21 9.64 22.37 0.22 -3.99 16 28 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 33 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.13 1.89 7.79 -2.39 -0.02 1.87 16 37 H 0.14 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.10 1.57 7.48 -2.39 -0.02 1.55 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.37 20.47 7.51 -92.71 -0.70 19.77 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.04 1.66 7.69 -2.38 -0.02 1.64 16 46 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -76.26 381.64 2.96 -73.30 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.28 Total: 31.99 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.72 Total: -1.99 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.08 Total: -118.37 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.99 Total: -32.40 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.26 2.96 -73.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970816871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.431 kcal (2) G-P(sol) polarization free energy of solvation -76.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds