Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47110 * 2 1 4 4 O 1.42908 * 109.46860 * 119.99699 * 2 1 3 5 5 C 1.35907 * 116.99700 * 276.08309 * 4 2 1 6 6 C 1.38732 * 120.05380 * 355.64974 * 5 4 2 7 7 C 1.38145 * 119.93973 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05757 * 359.97438 * 7 6 5 9 9 C 1.38268 * 120.11112 * 0.29137 * 8 7 6 10 10 C 1.38143 * 120.05344 * 359.45398 * 9 8 7 11 11 C 1.50694 * 109.47334 * 239.99219 * 2 1 3 12 12 O 1.21287 * 120.00446 * 249.36219 * 11 2 1 13 13 N 1.34784 * 120.00027 * 69.36696 * 11 2 1 14 14 C 1.46921 * 120.62962 * 185.33750 * 13 11 2 15 15 C 1.52758 * 109.00687 * 233.58062 * 14 13 11 16 16 C 1.53041 * 109.38693 * 305.59202 * 15 14 13 17 17 N 1.46500 * 109.46502 * 181.25982 * 16 15 14 18 18 C 1.36941 * 119.99987 * 84.92940 * 17 16 15 19 19 H 1.08001 * 120.00093 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99815 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00378 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47043 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47426 * 119.99905 * 22 20 18 25 25 H 1.48501 * 109.47000 * 239.99897 * 22 20 18 26 26 C 1.53036 * 109.53669 * 61.23820 * 16 15 14 27 27 C 1.46931 * 120.62769 * 5.61765 * 13 11 2 28 28 H 1.08999 * 109.47239 * 174.98882 * 1 2 3 29 29 H 1.08998 * 109.47566 * 294.99532 * 1 2 3 30 30 H 1.08999 * 109.46903 * 54.99593 * 1 2 3 31 31 H 1.07999 * 120.02917 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.97076 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.94948 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.97414 * 179.70657 * 9 8 7 35 35 H 1.08001 * 120.02825 * 180.25331 * 10 9 8 36 36 H 1.08989 * 109.59050 * 353.41895 * 14 13 11 37 37 H 1.09002 * 109.58361 * 113.84814 * 14 13 11 38 38 H 1.09000 * 109.56581 * 185.55591 * 15 14 13 39 39 H 1.08996 * 109.36379 * 65.50133 * 15 14 13 40 40 H 1.09004 * 109.46011 * 301.22334 * 16 15 14 41 41 H 0.96996 * 120.00220 * 264.93217 * 17 16 15 42 42 H 0.96999 * 120.00302 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.49924 * 178.68864 * 26 16 15 44 44 H 1.08995 * 109.52615 * 58.60407 * 26 16 15 45 45 H 1.08996 * 109.58251 * 246.15695 * 27 13 11 46 46 H 1.08999 * 109.58395 * 6.43670 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0909 0.0570 2.3097 6 6 1.8097 1.4154 2.2883 7 6 1.8969 2.1559 3.4512 8 6 2.2637 1.5444 4.6358 9 6 2.5498 0.1918 4.6586 10 6 2.4589 -0.5542 3.4995 11 6 2.0323 -0.7105 -1.2303 12 8 2.5835 -1.7860 -1.1270 13 7 1.8692 -0.1509 -2.4456 14 6 2.2473 -0.8814 -3.6629 15 6 3.1943 -0.0137 -4.4899 16 6 2.5413 1.3458 -4.7495 17 7 3.4355 2.1685 -5.5679 18 6 3.4209 2.0467 -6.9318 19 1 2.7500 1.3445 -7.4042 20 6 4.2686 2.8259 -7.7072 21 7 5.0866 3.6814 -7.1316 22 14 4.2483 2.6602 -9.5678 23 1 3.2473 1.6368 -9.9627 24 1 3.8888 3.9658 -10.1771 25 1 5.5930 2.2459 -10.0425 26 6 2.2781 2.0501 -3.4165 27 6 1.3155 1.2037 -2.5777 28 1 -0.3634 -1.0237 -0.0898 29 1 -0.3634 0.4342 0.9314 30 1 -0.3633 0.5895 -0.8418 31 1 1.5228 1.8934 1.3634 32 1 1.6777 3.2133 3.4352 33 1 2.3309 2.1249 5.5440 34 1 2.8406 -0.2826 5.5842 35 1 2.6785 -1.6114 3.5186 36 1 2.7487 -1.8102 -3.3909 37 1 1.3548 -1.1033 -4.2480 38 1 3.4027 -0.5046 -5.4405 39 1 4.1255 0.1288 -3.9416 40 1 1.5979 1.2010 -5.2760 41 1 4.0378 2.7995 -5.1438 42 1 5.6786 4.2261 -7.6735 43 1 1.8344 3.0281 -3.6031 44 1 3.2177 2.1736 -2.8780 45 1 0.3455 1.1552 -3.0724 46 1 1.1999 1.6491 -1.5896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997248648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = -48.712808 kcal Electronic energy + Delta-G solvation = -26644.737352 eV Core-core repulsion = 22920.279375 eV Total energy + Delta-G solvation = -3724.457977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90380 -40.72230 -38.92975 -38.13590 -36.24413 -34.20116 -33.23898 -31.99856 -31.62359 -30.95100 -30.47443 -26.91810 -25.81465 -24.40815 -24.18889 -23.58608 -22.87600 -21.51713 -20.22647 -19.53978 -19.11519 -18.10621 -17.53983 -16.90283 -16.79834 -16.64958 -16.22467 -15.91401 -15.48571 -15.43188 -15.36879 -14.99805 -14.88577 -14.41401 -14.35794 -14.04522 -13.98187 -13.61124 -13.43543 -13.21722 -13.12242 -12.90448 -12.81257 -12.64056 -12.45475 -12.22552 -12.13928 -12.09006 -11.95904 -11.69842 -11.67186 -11.41794 -10.91992 -10.78110 -9.93783 -9.77834 -9.18006 -9.01241 -7.94218 -5.22431 0.40407 0.49059 1.35743 1.47239 1.48380 1.49181 1.57687 2.42555 2.56195 2.85434 3.23380 3.39458 3.54977 3.76687 3.83490 3.87879 3.93517 4.02595 4.09376 4.14045 4.30874 4.32322 4.38734 4.41829 4.52596 4.58382 4.62608 4.65259 4.70412 4.79279 4.81074 4.84124 4.95367 5.08219 5.10378 5.11723 5.28094 5.36585 5.47674 5.49666 5.53576 5.56209 5.62225 5.85004 6.23328 6.28438 6.41888 6.98201 7.34483 8.10721 8.32562 9.29515 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.002531 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.145914 B =11058.224434 C =11632.844690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.068 3.932 3 H 0.119 0.881 4 O -0.316 6.316 5 C 0.106 3.894 6 C -0.218 4.218 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.082 4.082 10 C -0.174 4.174 11 C 0.514 3.486 12 O -0.574 6.574 13 N -0.598 5.598 14 C 0.122 3.878 15 C -0.140 4.140 16 C 0.173 3.827 17 N -0.738 5.738 18 C -0.233 4.233 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.299 1.299 26 C -0.133 4.133 27 C 0.109 3.891 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 -3.126 22.968 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 H 0.136 0.864 4 O -0.230 6.230 5 C 0.061 3.939 6 C -0.237 4.237 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.100 4.100 10 C -0.192 4.192 11 C 0.302 3.698 12 O -0.453 6.453 13 N -0.331 5.331 14 C 0.000 4.000 15 C -0.181 4.181 16 C 0.065 3.935 17 N -0.376 5.376 18 C -0.365 4.365 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.226 1.226 26 C -0.172 4.172 27 C -0.013 4.013 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.110 -3.961 22.793 26.590 hybrid contribution 1.040 0.157 -1.343 1.706 sum -12.070 -3.804 21.449 24.904 Atomic orbital electron populations 1.22343 0.89972 1.04405 1.05796 1.22342 0.97512 0.97096 0.82194 0.86402 1.86176 1.81373 1.39054 1.16397 1.19375 0.97247 0.91194 0.86080 1.21519 1.08359 0.92538 1.01268 1.21343 0.96135 1.00886 0.91617 1.21469 1.02208 0.95066 0.99310 1.21289 0.96874 0.94417 0.97442 1.20685 1.06350 1.01225 0.90972 1.20625 0.78548 0.85606 0.84978 1.90693 1.43954 1.24206 1.86487 1.48114 1.62570 1.17590 1.04874 1.21476 0.99252 0.94888 0.84423 1.22398 0.98301 0.98519 0.98850 1.20437 0.92721 0.89278 0.91093 1.42671 1.45932 1.46184 1.02862 1.19657 1.16167 1.16554 0.84112 0.90395 1.25525 0.99607 0.99748 1.02141 1.69815 1.28081 1.28929 1.35389 0.85139 0.76994 0.77200 0.80856 1.18864 1.22083 1.22647 1.22121 0.99920 0.99819 0.95369 1.22146 0.97319 0.79485 1.02344 0.91925 0.89234 0.87382 0.83748 0.83170 0.83390 0.83156 0.85733 0.90935 0.89109 0.92242 0.94613 0.92589 0.79742 0.94182 0.89317 0.92944 0.87808 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.02 71.98 0.65 -1.75 16 2 C 0.07 1.43 1.81 29.84 0.05 1.48 16 3 H 0.12 1.94 4.69 -2.39 -0.01 1.93 16 4 O -0.32 -8.51 9.36 -73.64 -0.69 -9.20 16 5 C 0.11 2.37 6.51 22.51 0.15 2.52 16 6 C -0.22 -3.71 8.46 22.37 0.19 -3.52 16 7 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 8 C -0.16 -2.13 10.04 22.28 0.22 -1.91 16 9 C -0.08 -1.25 10.04 22.25 0.22 -1.03 16 10 C -0.17 -3.58 9.99 22.36 0.22 -3.35 16 11 C 0.51 14.67 7.04 87.65 0.62 15.29 16 12 O -0.57 -22.03 15.94 15.82 0.25 -21.78 16 13 N -0.60 -14.96 2.98 -819.76 -2.44 -17.40 16 14 C 0.12 3.47 6.41 86.22 0.55 4.03 16 15 C -0.14 -4.86 5.64 30.53 0.17 -4.69 16 16 C 0.17 6.15 2.73 45.02 0.12 6.27 16 17 N -0.74 -35.40 5.12 -322.81 -1.65 -37.05 16 18 C -0.23 -12.45 9.93 84.03 0.83 -11.61 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 22 Si 0.97 45.49 29.55 68.60 2.03 47.51 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 C -0.13 -3.57 5.55 30.67 0.17 -3.40 16 27 C 0.11 2.00 5.17 86.36 0.45 2.45 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.06 7.50 -2.39 -0.02 1.04 16 30 H 0.11 0.98 6.35 -2.39 -0.02 0.96 16 31 H 0.14 1.85 5.78 -2.91 -0.02 1.83 16 32 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.94 8.08 -2.38 -0.02 1.92 16 41 H 0.37 19.44 7.80 -92.71 -0.72 18.72 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.11 1.34 5.06 -2.39 -0.01 1.33 16 Total: -1.00 -75.15 368.81 3.36 -71.79 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.27 Total: 28.71 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.32 Total: -4.07 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -3.81 Total: -112.96 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.44 Total: -30.98 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -75.15 3.36 -71.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997248648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.074 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds