Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46728 * 2 1 4 4 O 1.42895 * 109.47299 * 119.99686 * 2 1 3 5 5 C 1.35901 * 117.00189 * 275.49767 * 4 2 1 6 6 C 1.38732 * 120.05713 * 355.01638 * 5 4 2 7 7 C 1.38144 * 119.94879 * 179.74321 * 6 5 4 8 8 C 1.38264 * 120.05167 * 0.51189 * 7 6 5 9 9 C 1.38268 * 120.11163 * 359.76182 * 8 7 6 10 10 C 1.38147 * 120.05677 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47300 * 239.99849 * 2 1 3 12 12 O 1.21278 * 120.00027 * 250.14690 * 11 2 1 13 13 N 1.34780 * 119.99886 * 70.14824 * 11 2 1 14 14 C 1.46928 * 120.62918 * 5.29352 * 13 11 2 15 15 C 1.52765 * 109.00990 * 233.58465 * 14 13 11 16 16 C 1.53043 * 109.38047 * 305.59270 * 15 14 13 17 17 C 1.53034 * 109.53947 * 61.24048 * 16 15 14 18 18 H 1.08996 * 109.50320 * 58.58084 * 17 16 15 19 19 N 1.46501 * 109.52720 * 178.66682 * 17 16 15 20 20 C 1.36940 * 119.99838 * 274.85902 * 19 17 16 21 21 H 1.08000 * 119.99949 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99786 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99622 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46940 * 60.00045 * 24 22 20 26 26 H 1.48498 * 109.46723 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47307 * 299.99514 * 24 22 20 28 28 C 1.46922 * 120.63157 * 185.57606 * 13 11 2 29 29 H 1.09003 * 109.47465 * 295.00820 * 1 2 3 30 30 H 1.09006 * 109.46831 * 175.01306 * 1 2 3 31 31 H 1.08991 * 109.47584 * 55.01455 * 1 2 3 32 32 H 1.08010 * 120.02413 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97377 * 180.23047 * 7 6 5 34 34 H 1.08001 * 119.94331 * 179.75060 * 8 7 6 35 35 H 1.08002 * 119.96909 * 179.97438 * 9 8 7 36 36 H 1.08001 * 120.02704 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.58878 * 353.42065 * 14 13 11 38 38 H 1.09007 * 109.58549 * 113.85089 * 14 13 11 39 39 H 1.08998 * 109.56585 * 185.55663 * 15 14 13 40 40 H 1.08996 * 109.38608 * 65.51525 * 15 14 13 41 41 H 1.09002 * 109.45919 * 301.21546 * 16 15 14 42 42 H 1.09002 * 109.44342 * 181.25427 * 16 15 14 43 43 H 0.97001 * 120.00532 * 94.84423 * 19 17 16 44 44 H 0.97002 * 120.00146 * 179.97438 * 23 22 20 45 45 H 1.08994 * 109.58914 * 246.15587 * 28 13 11 46 46 H 1.09003 * 109.58515 * 6.44018 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1026 0.0601 2.3066 6 6 1.8454 1.4231 2.2795 7 6 1.9388 2.1658 3.4406 8 6 2.2986 1.5537 4.6270 9 6 2.5611 0.1965 4.6556 10 6 2.4637 -0.5516 3.4983 11 6 2.0323 -0.7104 -1.2304 12 8 2.5708 -1.7923 -1.1286 13 7 1.8833 -0.1434 -2.4440 14 6 1.3389 1.2152 -2.5738 15 6 0.1580 1.1877 -3.5425 16 6 0.6010 0.5585 -4.8654 17 6 1.0598 -0.8806 -4.6195 18 1 0.2437 -1.4523 -4.1778 19 7 1.4537 -1.4930 -5.8908 20 6 0.5081 -2.0742 -6.6928 21 1 -0.5280 -2.0815 -6.3879 22 6 0.8812 -2.6540 -7.8976 23 7 2.1438 -2.6446 -8.2694 24 14 -0.4087 -3.4475 -8.9913 25 1 -1.4206 -2.4324 -9.3798 26 1 0.2421 -3.9891 -10.2113 27 1 -1.0729 -4.5513 -8.2526 28 6 2.2562 -0.8744 -3.6627 29 1 -0.3634 0.4344 0.9313 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3634 0.5892 -0.8419 32 1 1.5687 1.9025 1.3521 33 1 1.7350 3.2262 3.4207 34 1 2.3751 2.1368 5.5329 35 1 2.8423 -0.2792 5.5835 36 1 2.6684 -1.6118 3.5212 37 1 1.0022 1.5685 -1.5992 38 1 2.1096 1.8822 -2.9604 39 1 -0.1906 2.2047 -3.7220 40 1 -0.6500 0.5968 -3.1112 41 1 1.4252 1.1360 -5.2842 42 1 -0.2349 0.5586 -5.5651 43 1 2.3842 -1.4866 -6.1646 44 1 2.4045 -3.0501 -9.1111 45 1 3.1031 -0.3813 -4.1398 46 1 2.5268 -1.8986 -3.4061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000844624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -47.572136 kcal Electronic energy + Delta-G solvation = -26739.280926 eV Core-core repulsion = 23014.872413 eV Total energy + Delta-G solvation = -3724.408514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93258 -40.73598 -38.91288 -38.12529 -36.32955 -34.18476 -33.06790 -32.75068 -31.74608 -30.62249 -29.91247 -26.99719 -25.99016 -25.11201 -23.65696 -23.42847 -22.94918 -21.52913 -20.16106 -19.53510 -19.16065 -18.19739 -17.53250 -16.90452 -16.75652 -16.66978 -16.18565 -15.95543 -15.68777 -15.42297 -15.23463 -15.08889 -14.78246 -14.58000 -14.35745 -14.17453 -13.93416 -13.72346 -13.50438 -13.26717 -12.97983 -12.84917 -12.81706 -12.45377 -12.37527 -12.22072 -12.19700 -12.09088 -11.83770 -11.74066 -11.65937 -11.64158 -10.91610 -10.82894 -9.92771 -9.78193 -9.17407 -9.04824 -7.96710 -5.26468 0.41497 0.49956 1.35965 1.41661 1.46284 1.48817 1.54808 2.40256 2.55866 2.86500 3.22558 3.36442 3.54429 3.76561 3.79614 3.94155 4.00020 4.02852 4.05288 4.09249 4.22533 4.31710 4.34606 4.40015 4.53240 4.55220 4.59991 4.62642 4.73517 4.75997 4.81189 4.84260 5.02411 5.11452 5.12144 5.16149 5.36221 5.38450 5.40947 5.48321 5.50548 5.59512 5.63203 5.86269 6.23790 6.25010 6.43575 6.97697 7.30533 8.03407 8.27263 9.26368 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031143 B = 0.002487 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.849804 B =11256.241221 C =11605.634441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.131 0.869 4 O -0.319 6.319 5 C 0.105 3.895 6 C -0.216 4.216 7 C -0.079 4.079 8 C -0.162 4.162 9 C -0.083 4.083 10 C -0.176 4.176 11 C 0.510 3.490 12 O -0.578 6.578 13 N -0.595 5.595 14 C 0.094 3.906 15 C -0.125 4.125 16 C -0.128 4.128 17 C 0.168 3.832 18 H 0.033 0.967 19 N -0.736 5.736 20 C -0.239 4.239 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.281 1.281 28 C 0.119 3.881 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.072 0.928 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 17.323 25.660 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 H 0.148 0.852 4 O -0.233 6.233 5 C 0.060 3.940 6 C -0.235 4.235 7 C -0.097 4.097 8 C -0.180 4.180 9 C -0.101 4.101 10 C -0.195 4.195 11 C 0.298 3.702 12 O -0.456 6.456 13 N -0.328 5.328 14 C -0.026 4.026 15 C -0.164 4.164 16 C -0.169 4.169 17 C 0.059 3.941 18 H 0.051 0.949 19 N -0.376 5.376 20 C -0.371 4.371 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.608 16.481 25.616 30.673 hybrid contribution 0.070 -1.171 -1.411 1.835 sum -3.538 15.310 24.205 28.858 Atomic orbital electron populations 1.22392 0.90479 1.04059 1.05913 1.22299 0.97040 0.97369 0.81794 0.85217 1.86197 1.81343 1.39027 1.16703 1.19398 0.97300 0.91337 0.85974 1.21526 1.08332 0.92146 1.01448 1.21356 0.95892 1.01025 0.91441 1.21476 1.02243 0.94849 0.99451 1.21275 0.96971 0.94533 0.97299 1.20682 1.06555 1.01104 0.91152 1.20828 0.78631 0.85585 0.85198 1.90715 1.44530 1.23847 1.86551 1.48044 1.63139 1.17459 1.04207 1.22240 0.97058 0.80895 1.02451 1.21859 0.97443 1.02985 0.94065 1.22075 1.00787 0.96134 0.97863 1.20638 0.94346 0.93752 0.85408 0.94883 1.42493 1.07517 1.68160 1.19456 1.19505 0.90406 1.28074 0.99116 0.90762 1.25574 0.98159 1.02995 1.00029 1.69809 1.16686 1.51569 1.23836 0.85220 0.78247 0.78451 0.77896 1.19958 1.22187 1.20774 1.21623 0.97559 0.96836 0.84425 0.88662 0.92842 0.87390 0.83311 0.82781 0.83327 0.83363 0.86162 0.86279 0.89070 0.87249 0.91381 0.92417 0.93306 0.79518 0.93986 0.91007 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.03 71.98 0.65 -2.16 16 2 C 0.07 1.60 1.81 29.85 0.05 1.66 16 3 H 0.13 1.83 4.84 -2.39 -0.01 1.82 16 4 O -0.32 -8.81 9.35 -73.60 -0.69 -9.50 16 5 C 0.10 2.30 6.51 22.51 0.15 2.44 16 6 C -0.22 -3.27 8.54 22.37 0.19 -3.08 16 7 C -0.08 -0.92 10.04 22.25 0.22 -0.70 16 8 C -0.16 -1.91 10.04 22.28 0.22 -1.69 16 9 C -0.08 -1.22 10.04 22.26 0.22 -1.00 16 10 C -0.18 -3.65 9.99 22.37 0.22 -3.42 16 11 C 0.51 15.89 7.03 87.66 0.62 16.51 16 12 O -0.58 -24.75 15.97 15.82 0.25 -24.49 16 13 N -0.59 -16.48 2.98 -819.72 -2.44 -18.92 16 14 C 0.09 1.59 5.57 86.22 0.48 2.07 16 15 C -0.13 -2.38 5.95 30.53 0.18 -2.20 16 16 C -0.13 -3.98 5.47 30.62 0.17 -3.81 16 17 C 0.17 6.61 2.92 45.07 0.13 6.74 16 18 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 19 N -0.74 -37.45 5.12 -322.57 -1.65 -39.11 16 20 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 21 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 23 N -0.97 -59.84 13.06 21.65 0.28 -59.55 16 24 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.12 4.32 5.89 86.36 0.51 4.83 16 29 H 0.09 1.20 7.59 -2.39 -0.02 1.18 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.11 1.23 5.69 -2.39 -0.01 1.22 16 32 H 0.15 1.48 5.79 -2.91 -0.02 1.46 16 33 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.12 1.09 4.54 -2.39 -0.01 1.08 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.30 7.76 -2.39 -0.02 1.28 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.37 20.41 7.80 -92.71 -0.72 19.68 16 44 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.06 2.50 7.04 -2.39 -0.02 2.48 16 Total: -1.00 -78.93 367.99 3.37 -75.56 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.27 Total: 27.70 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.32 Total: -0.21 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -3.81 Total: -117.58 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.44 Total: -33.99 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -78.93 3.37 -75.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000844624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.988 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds