Wall clock time and date at job start Tue Mar 31 2020 13:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47074 * 2 1 4 4 C 1.35911 * 117.00082 * 179.97438 * 3 2 1 5 5 C 1.38487 * 119.98554 * 0.02562 * 4 3 2 6 6 C 1.39486 * 119.79613 * 179.97438 * 5 4 3 7 7 C 1.47856 * 120.12076 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99826 * 352.98306 * 7 6 5 9 9 N 1.34769 * 120.00382 * 172.99307 * 7 6 5 10 10 C 1.47029 * 125.64738 * 5.45869 * 9 7 6 11 11 C 1.54331 * 107.26647 * 178.85727 * 10 9 7 12 12 C 1.55156 * 103.02195 * 338.13849 * 11 10 9 13 13 H 1.09000 * 111.00971 * 277.23618 * 12 11 10 14 14 N 1.46495 * 111.00766 * 153.38081 * 12 11 10 15 15 C 1.36934 * 120.00372 * 161.34940 * 14 12 11 16 16 H 1.08001 * 119.99852 * 0.02562 * 15 14 12 17 17 C 1.38820 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31614 * 119.99867 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47278 * 89.99460 * 19 17 15 21 21 H 1.48502 * 109.47103 * 209.99715 * 19 17 15 22 22 H 1.48495 * 109.47111 * 329.99527 * 19 17 15 23 23 C 1.47422 * 125.65408 * 185.77564 * 9 7 6 24 24 C 1.39602 * 119.76328 * 359.97438 * 6 5 4 25 25 C 1.37968 * 119.96402 * 0.26220 * 24 6 5 26 26 C 1.38290 * 120.20589 * 359.50511 * 25 24 6 27 27 C 1.50701 * 119.87889 * 180.23869 * 26 25 24 28 28 H 1.09002 * 109.46760 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47036 * 299.99565 * 1 2 3 30 30 H 1.09003 * 109.47122 * 59.99863 * 1 2 3 31 31 H 1.09001 * 109.47036 * 240.00434 * 2 1 3 32 32 H 1.08995 * 109.47256 * 120.00415 * 2 1 3 33 33 H 1.08006 * 120.10363 * 0.02706 * 5 4 3 34 34 H 1.09002 * 109.88082 * 298.40132 * 10 9 7 35 35 H 1.08997 * 109.87746 * 59.56305 * 10 9 7 36 36 H 1.08999 * 110.85000 * 219.67818 * 11 10 9 37 37 H 1.08997 * 110.51775 * 96.45225 * 11 10 9 38 38 H 0.97009 * 119.99850 * 341.35559 * 14 12 11 39 39 H 0.97005 * 120.00023 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.36367 * 322.92528 * 23 9 7 41 41 H 1.08999 * 110.36865 * 85.13245 * 23 9 7 42 42 H 1.07996 * 120.01704 * 179.97438 * 24 6 5 43 43 H 1.08003 * 119.89718 * 179.74328 * 25 24 6 44 44 H 1.08994 * 109.47053 * 270.23195 * 27 26 25 45 45 H 1.09000 * 109.47083 * 30.23499 * 27 26 25 46 46 H 1.08997 * 109.46974 * 150.22953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1971 0.4269 0.0005 6 6 5.5794 0.6143 0.0005 7 6 6.4864 -0.5533 0.0000 8 8 6.0341 -1.6743 0.1281 9 7 7.8146 -0.3749 -0.1424 10 6 8.5044 0.9226 -0.1921 11 6 10.0138 0.6339 -0.3342 12 6 10.1445 -0.8156 0.2036 13 1 10.2076 -0.8245 1.2918 14 7 11.2974 -1.4950 -0.3926 15 6 11.8179 -2.6121 0.2043 16 1 11.3782 -2.9926 1.1144 17 6 12.9100 -3.2561 -0.3610 18 7 13.4100 -4.3301 0.2124 19 14 13.6700 -2.5985 -1.9356 20 1 14.7354 -1.6198 -1.5999 21 1 14.2561 -3.7223 -2.7094 22 1 12.6227 -1.9304 -2.7493 23 6 8.8159 -1.4480 -0.2807 24 6 6.1033 1.9083 0.0000 25 6 5.2540 2.9956 0.0050 26 6 3.8839 2.8083 0.0001 27 6 2.9631 4.0012 0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7859 -0.5718 -0.0004 34 1 8.1525 1.4969 -1.0492 35 1 8.3197 1.4760 0.7286 36 1 10.5996 1.3244 0.2724 37 1 10.3158 0.6858 -1.3802 38 1 11.6921 -1.1534 -1.2103 39 1 14.1733 -4.7800 -0.1824 40 1 8.5496 -2.2984 0.3470 41 1 8.8987 -1.7577 -1.3225 42 1 7.1728 2.0581 0.0005 43 1 5.6606 3.9962 0.0088 44 1 2.7411 4.2888 1.0278 45 1 3.4456 4.8327 -0.5137 46 1 2.0366 3.7451 -0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019461486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:09 Heat of formation + Delta-G solvation = -10.216175 kcal Electronic energy + Delta-G solvation = -26297.857017 eV Core-core repulsion = 22575.068379 eV Total energy + Delta-G solvation = -3722.788638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85026 -39.72573 -37.71113 -37.29084 -34.45216 -33.23657 -31.94425 -31.68483 -30.20116 -29.99316 -28.45948 -26.95706 -24.56792 -24.11929 -23.03720 -21.77845 -21.57340 -20.45730 -19.89555 -18.40697 -17.64816 -16.53105 -16.44051 -16.23389 -16.08793 -15.58073 -15.04274 -14.64698 -14.26849 -14.11081 -13.94872 -13.86550 -13.64592 -13.25428 -13.04566 -12.97471 -12.81117 -12.68251 -12.52580 -12.46006 -12.23677 -11.97105 -11.87921 -11.38976 -11.27349 -11.17978 -11.02750 -10.86405 -10.69628 -10.42546 -10.09882 -9.82301 -9.66240 -9.09844 -9.06452 -8.45796 -8.38360 -7.41243 -5.84586 -3.23208 0.67731 1.17861 2.81954 2.87903 3.07687 3.32097 3.34027 3.40926 3.69437 4.33407 4.50829 4.51705 4.60651 4.61134 4.69207 4.73995 4.90424 4.94426 4.96691 4.99311 5.11085 5.21516 5.26903 5.36776 5.38770 5.41977 5.44504 5.50924 5.54652 5.58439 5.67122 5.75778 5.80928 5.86753 5.98236 6.06743 6.12946 6.18510 6.20417 6.38872 6.46917 6.54402 6.72643 7.11107 7.63882 7.89578 8.25020 8.33748 9.10011 9.81646 9.99141 11.33036 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.002571 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.724820 B =10888.642610 C =11703.316587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.313 6.313 4 C 0.118 3.882 5 C -0.149 4.149 6 C -0.092 4.092 7 C 0.567 3.433 8 O -0.540 6.540 9 N -0.606 5.606 10 C 0.094 3.906 11 C -0.147 4.147 12 C 0.177 3.823 13 H 0.074 0.926 14 N -0.736 5.736 15 C -0.254 4.254 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.082 3.918 24 C -0.157 4.157 25 C -0.093 4.093 26 C -0.098 4.098 27 C -0.107 4.107 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.201 18.588 -1.462 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.227 6.227 4 C 0.073 3.927 5 C -0.168 4.168 6 C -0.095 4.095 7 C 0.356 3.644 8 O -0.419 6.419 9 N -0.340 5.340 10 C -0.029 4.029 11 C -0.186 4.186 12 C 0.066 3.934 13 H 0.092 0.908 14 N -0.377 5.377 15 C -0.383 4.383 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.575 5.575 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.043 4.043 24 C -0.175 4.175 25 C -0.111 4.111 26 C -0.099 4.099 27 C -0.163 4.163 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.181 0.819 43 H 0.152 0.848 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.579 17.878 -1.229 28.826 hybrid contribution 0.680 -0.010 -1.201 1.380 sum -21.899 17.868 -2.429 28.367 Atomic orbital electron populations 1.21765 0.92601 1.02978 1.03358 1.22843 0.95890 0.81803 1.01935 1.86042 1.18481 1.29407 1.88791 1.18620 0.82515 0.93246 0.98322 1.21310 0.92770 0.98874 1.03886 1.19708 0.93138 0.93459 1.03188 1.17941 0.80842 0.88490 0.77138 1.90767 1.75543 1.25226 1.50326 1.48365 1.05511 1.09026 1.71065 1.22500 0.93095 0.86173 1.01114 1.23031 0.93638 0.99199 1.02698 1.21276 0.85987 0.88830 0.97335 0.90785 1.42644 1.33334 1.32540 1.29202 1.19077 1.10344 1.01430 1.07474 0.88957 1.24697 0.98277 0.97219 0.98548 1.69701 1.26395 1.20534 1.40866 0.86551 0.79385 0.78247 0.84311 1.20927 1.21628 1.20275 1.23388 0.88287 0.90647 1.01951 1.22720 1.03072 0.91392 1.00308 1.20886 0.91501 0.99235 0.99468 1.19480 0.94522 0.92546 1.03394 1.20649 0.98633 0.94605 1.02429 0.90262 0.91546 0.91586 0.91813 0.91719 0.84264 0.90608 0.90378 0.89631 0.90496 0.80208 0.92879 0.90348 0.91344 0.81852 0.84809 0.91180 0.91495 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.32 9.16 -19.46 -0.18 -3.50 16 4 C 0.12 1.37 6.65 -39.28 -0.26 1.11 16 5 C -0.15 -1.94 8.58 -39.02 -0.33 -2.28 16 6 C -0.09 -1.25 5.87 -104.99 -0.62 -1.87 16 7 C 0.57 9.49 7.81 -12.33 -0.10 9.40 16 8 O -0.54 -10.96 16.60 5.32 0.09 -10.87 16 9 N -0.61 -9.44 3.33 -175.97 -0.59 -10.02 16 10 C 0.09 1.08 4.87 -3.06 -0.01 1.07 16 11 C -0.15 -1.91 6.57 -24.89 -0.16 -2.07 16 12 C 0.18 3.19 3.69 -65.78 -0.24 2.94 16 13 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 14 N -0.74 -16.43 5.08 -51.35 -0.26 -16.69 16 15 C -0.25 -6.93 10.47 -15.06 -0.16 -7.08 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 19 Si 0.89 21.39 27.74 -169.99 -4.71 16.68 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 23 C 0.08 1.50 6.63 -2.53 -0.02 1.48 16 24 C -0.16 -1.69 8.61 -39.17 -0.34 -2.02 16 25 C -0.09 -0.86 9.68 -39.66 -0.38 -1.24 16 26 C -0.10 -0.99 5.90 -104.39 -0.62 -1.61 16 27 C -0.11 -0.80 9.78 36.01 0.35 -0.45 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 32 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 33 H 0.14 1.83 5.90 -52.48 -0.31 1.53 16 34 H 0.08 0.72 6.75 -51.93 -0.35 0.37 16 35 H 0.08 0.75 6.73 -51.93 -0.35 0.40 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 38 H 0.36 7.90 5.57 -40.82 -0.23 7.67 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.08 1.61 7.98 -51.93 -0.41 1.19 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.16 1.46 2.74 -58.12 -0.16 1.31 16 43 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 46 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -33.74 368.94 -8.52 -42.26 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.80 Total: 6.87 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.40 Total: -2.37 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.07 Total: -54.63 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.09 Total: -14.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.74 -8.52 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019461486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.045 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds