Wall clock time and date at job start Tue Mar 31 2020 13:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47074 * 2 1 4 4 C 1.35911 * 117.00082 * 179.97438 * 3 2 1 5 5 C 1.38487 * 119.98554 * 0.02562 * 4 3 2 6 6 C 1.39486 * 119.79613 * 179.97438 * 5 4 3 7 7 C 1.47856 * 120.12076 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99826 * 352.98306 * 7 6 5 9 9 N 1.34769 * 120.00382 * 172.99307 * 7 6 5 10 10 C 1.47029 * 125.64738 * 5.45869 * 9 7 6 11 11 C 1.54331 * 107.26647 * 178.85727 * 10 9 7 12 12 C 1.55156 * 103.02195 * 338.13849 * 11 10 9 13 13 H 1.09000 * 111.00971 * 277.23618 * 12 11 10 14 14 N 1.46495 * 111.00766 * 153.38081 * 12 11 10 15 15 C 1.36934 * 120.00372 * 161.34940 * 14 12 11 16 16 H 1.08001 * 119.99852 * 0.02562 * 15 14 12 17 17 C 1.38820 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31614 * 119.99867 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47278 * 89.99460 * 19 17 15 21 21 H 1.48502 * 109.47103 * 209.99715 * 19 17 15 22 22 H 1.48495 * 109.47111 * 329.99527 * 19 17 15 23 23 C 1.47422 * 125.65408 * 185.77564 * 9 7 6 24 24 C 1.39602 * 119.76328 * 359.97438 * 6 5 4 25 25 C 1.37968 * 119.96402 * 0.26220 * 24 6 5 26 26 C 1.38290 * 120.20589 * 359.50511 * 25 24 6 27 27 C 1.50701 * 119.87889 * 180.23869 * 26 25 24 28 28 H 1.09002 * 109.46760 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47036 * 299.99565 * 1 2 3 30 30 H 1.09003 * 109.47122 * 59.99863 * 1 2 3 31 31 H 1.09001 * 109.47036 * 240.00434 * 2 1 3 32 32 H 1.08995 * 109.47256 * 120.00415 * 2 1 3 33 33 H 1.08006 * 120.10363 * 0.02706 * 5 4 3 34 34 H 1.09002 * 109.88082 * 298.40132 * 10 9 7 35 35 H 1.08997 * 109.87746 * 59.56305 * 10 9 7 36 36 H 1.08999 * 110.85000 * 219.67818 * 11 10 9 37 37 H 1.08997 * 110.51775 * 96.45225 * 11 10 9 38 38 H 0.97009 * 119.99850 * 341.35559 * 14 12 11 39 39 H 0.97005 * 120.00023 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.36367 * 322.92528 * 23 9 7 41 41 H 1.08999 * 110.36865 * 85.13245 * 23 9 7 42 42 H 1.07996 * 120.01704 * 179.97438 * 24 6 5 43 43 H 1.08003 * 119.89718 * 179.74328 * 25 24 6 44 44 H 1.08994 * 109.47053 * 270.23195 * 27 26 25 45 45 H 1.09000 * 109.47083 * 30.23499 * 27 26 25 46 46 H 1.08997 * 109.46974 * 150.22953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1971 0.4269 0.0005 6 6 5.5794 0.6143 0.0005 7 6 6.4864 -0.5533 0.0000 8 8 6.0341 -1.6743 0.1281 9 7 7.8146 -0.3749 -0.1424 10 6 8.5044 0.9226 -0.1921 11 6 10.0138 0.6339 -0.3342 12 6 10.1445 -0.8156 0.2036 13 1 10.2076 -0.8245 1.2918 14 7 11.2974 -1.4950 -0.3926 15 6 11.8179 -2.6121 0.2043 16 1 11.3782 -2.9926 1.1144 17 6 12.9100 -3.2561 -0.3610 18 7 13.4100 -4.3301 0.2124 19 14 13.6700 -2.5985 -1.9356 20 1 14.7354 -1.6198 -1.5999 21 1 14.2561 -3.7223 -2.7094 22 1 12.6227 -1.9304 -2.7493 23 6 8.8159 -1.4480 -0.2807 24 6 6.1033 1.9083 0.0000 25 6 5.2540 2.9956 0.0050 26 6 3.8839 2.8083 0.0001 27 6 2.9631 4.0012 0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7859 -0.5718 -0.0004 34 1 8.1525 1.4969 -1.0492 35 1 8.3197 1.4760 0.7286 36 1 10.5996 1.3244 0.2724 37 1 10.3158 0.6858 -1.3802 38 1 11.6921 -1.1534 -1.2103 39 1 14.1733 -4.7800 -0.1824 40 1 8.5496 -2.2984 0.3470 41 1 8.8987 -1.7577 -1.3225 42 1 7.1728 2.0581 0.0005 43 1 5.6606 3.9962 0.0088 44 1 2.7411 4.2888 1.0278 45 1 3.4456 4.8327 -0.5137 46 1 2.0366 3.7451 -0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019461486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:07 Heat of formation + Delta-G solvation = -32.696494 kcal Electronic energy + Delta-G solvation = -26298.831837 eV Core-core repulsion = 22575.068379 eV Total energy + Delta-G solvation = -3723.763457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.84680 -40.77405 -38.88124 -38.35075 -36.16418 -34.22037 -33.46821 -32.60514 -31.47694 -31.05342 -29.61916 -28.01327 -25.84924 -25.00483 -24.55310 -22.68610 -22.47054 -21.83547 -21.07549 -19.85908 -19.18918 -17.70774 -17.41083 -17.18951 -17.12128 -16.52969 -16.39128 -16.12858 -15.61624 -15.41788 -14.89291 -14.76650 -14.73138 -14.49488 -14.37481 -14.06664 -13.87620 -13.62684 -13.57458 -13.42152 -13.16649 -12.95992 -12.88517 -12.68762 -12.63091 -12.43076 -12.11062 -12.05462 -11.86174 -11.78007 -11.72366 -11.45881 -11.12940 -10.99377 -10.01003 -9.71431 -9.38521 -9.21547 -8.04546 -5.41451 -0.26053 0.35808 1.38747 1.43899 1.50467 1.71169 1.80931 2.17747 2.47843 2.74844 3.22830 3.32557 3.43857 3.73789 3.77568 3.89619 3.91574 3.96338 4.06977 4.14031 4.19168 4.22015 4.28585 4.31592 4.45421 4.51011 4.56687 4.71988 4.74613 4.79914 4.84440 4.88033 4.89431 4.92826 5.04466 5.15860 5.18090 5.23014 5.25594 5.29959 5.34996 5.43981 5.73537 5.74573 6.18782 6.30127 6.41846 6.97421 7.04404 7.76492 7.97478 9.16680 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.002571 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.724820 B =10888.642610 C =11703.316587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.317 6.317 4 C 0.106 3.894 5 C -0.167 4.167 6 C -0.115 4.115 7 C 0.559 3.441 8 O -0.594 6.594 9 N -0.605 5.605 10 C 0.089 3.911 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.062 0.938 14 N -0.736 5.736 15 C -0.240 4.240 16 H 0.052 0.948 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.300 1.300 22 H -0.247 1.247 23 C 0.089 3.911 24 C -0.147 4.147 25 C -0.083 4.083 26 C -0.096 4.096 27 C -0.105 4.105 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.372 0.628 39 H 0.259 0.741 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.187 0.813 43 H 0.177 0.823 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 23.704 -2.956 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 O -0.232 6.232 4 C 0.061 3.939 5 C -0.186 4.186 6 C -0.118 4.118 7 C 0.351 3.649 8 O -0.477 6.477 9 N -0.337 5.337 10 C -0.031 4.031 11 C -0.169 4.169 12 C 0.058 3.942 13 H 0.080 0.920 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.070 0.930 17 C -0.255 4.255 18 N -0.633 5.633 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.227 1.227 22 H -0.171 1.171 23 C -0.037 4.037 24 C -0.165 4.165 25 C -0.101 4.101 26 C -0.097 4.097 27 C -0.162 4.162 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.207 0.793 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.203 0.797 43 H 0.194 0.806 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.096 23.082 -2.726 32.766 hybrid contribution 0.689 -1.595 -0.632 1.849 sum -22.407 21.486 -3.357 31.225 Atomic orbital electron populations 1.21772 0.90542 1.04088 1.03686 1.22996 0.97489 0.81130 1.01416 1.86039 1.18107 1.30269 1.88747 1.18840 0.82702 0.93637 0.98745 1.21272 0.93179 0.98886 1.05309 1.19527 0.92543 0.93457 1.06297 1.18575 0.81335 0.88914 0.76100 1.90727 1.76521 1.27553 1.52889 1.48378 1.04953 1.09907 1.70470 1.22903 0.91577 0.84467 1.04188 1.23007 0.95111 0.95194 1.03578 1.21433 0.83906 0.92098 0.96772 0.91980 1.42540 1.34438 1.31420 1.29439 1.18992 1.09625 1.02494 1.06002 0.93042 1.25613 0.99319 0.97724 1.02890 1.69906 1.27413 1.22722 1.43262 0.85329 0.79011 0.77459 0.79445 1.19643 1.22748 1.17145 1.23011 0.89627 0.90703 1.00316 1.22950 1.04403 0.90151 0.98955 1.21350 0.90741 1.00580 0.97409 1.19972 0.95703 0.92572 1.01492 1.20720 0.98029 0.94126 1.03281 0.88794 0.91203 0.91174 0.92343 0.92397 0.86024 0.87173 0.87359 0.86722 0.89357 0.79302 0.93246 0.94341 0.92419 0.79688 0.80596 0.90231 0.88994 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.04 0.79 5.46 71.98 0.39 1.18 16 3 O -0.32 -6.60 9.16 -92.55 -0.85 -7.44 16 4 C 0.11 2.36 6.65 22.47 0.15 2.51 16 5 C -0.17 -4.45 8.58 22.63 0.19 -4.25 16 6 C -0.12 -3.07 5.87 -20.10 -0.12 -3.18 16 7 C 0.56 19.20 7.81 86.79 0.68 19.88 16 8 O -0.59 -25.97 16.60 -3.88 -0.06 -26.04 16 9 N -0.61 -18.47 3.33 -828.93 -2.76 -21.23 16 10 C 0.09 1.69 4.87 86.73 0.42 2.11 16 11 C -0.13 -2.87 6.57 31.78 0.21 -2.66 16 12 C 0.17 5.94 3.69 46.38 0.17 6.11 16 13 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 14 N -0.74 -32.47 5.08 -316.38 -1.61 -34.08 16 15 C -0.24 -13.52 10.47 84.04 0.88 -12.64 16 16 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 17 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 18 N -0.98 -63.15 13.97 21.65 0.30 -62.85 16 19 Si 0.96 44.09 27.74 68.60 1.90 45.99 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 22 H -0.25 -10.00 6.52 99.48 0.65 -9.35 16 23 C 0.09 3.37 6.63 86.86 0.58 3.95 16 24 C -0.15 -2.60 8.61 22.54 0.19 -2.41 16 25 C -0.08 -1.13 9.68 22.22 0.21 -0.92 16 26 C -0.10 -1.63 5.90 -19.72 -0.12 -1.75 16 27 C -0.11 -1.18 9.78 71.24 0.70 -0.48 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 32 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 33 H 0.12 3.54 5.90 -2.91 -0.02 3.52 16 34 H 0.11 1.46 6.75 -2.39 -0.02 1.44 16 35 H 0.11 1.49 6.73 -2.39 -0.02 1.47 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.81 8.00 -2.39 -0.02 1.79 16 38 H 0.37 15.23 5.57 -92.70 -0.52 14.71 16 39 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 40 H 0.04 1.72 7.98 -2.39 -0.02 1.70 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.19 2.30 2.74 -8.21 -0.02 2.27 16 43 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 46 H 0.06 0.84 7.52 -2.39 -0.02 0.82 16 Total: -1.00 -80.36 368.94 3.09 -77.27 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.41 Total: 25.13 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.75 Total: 3.24 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.06 Total: -118.16 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.91 Total: -33.48 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 45.99 kcal Total: -80.36 3.09 -77.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019461486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.575 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds