Wall clock time and date at job start Tue Mar 31 2020 13:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47101 * 2 1 4 4 C 1.34778 * 120.00083 * 83.69643 * 3 2 1 5 5 O 1.21691 * 120.00104 * 184.06980 * 4 3 2 6 6 C 1.46661 * 119.99816 * 4.06098 * 4 3 2 7 7 O 1.34936 * 126.00569 * 353.83928 * 6 4 3 8 8 C 1.33940 * 109.37589 * 179.77910 * 7 6 4 9 9 C 1.35137 * 108.75670 * 0.31650 * 8 7 6 10 10 C 1.36471 * 126.00391 * 173.80743 * 6 4 3 11 11 C 1.51070 * 143.67136 * 359.97438 * 10 6 4 12 12 C 1.54378 * 105.24186 * 162.86957 * 11 10 6 13 13 C 1.51151 * 143.44964 * 180.02562 * 9 8 7 14 14 C 1.46497 * 120.00080 * 263.69785 * 3 2 1 15 15 H 1.09002 * 110.64063 * 1.68914 * 14 3 2 16 16 C 1.55166 * 110.72082 * 125.02095 * 14 3 2 17 17 C 1.54911 * 101.58104 * 153.86792 * 16 14 3 18 18 N 1.47430 * 104.83196 * 322.98793 * 17 16 14 19 19 C 1.36932 * 125.65344 * 204.16577 * 18 17 16 20 20 H 1.07996 * 120.00527 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99647 * 359.96119 * 19 18 17 22 22 N 1.31621 * 119.99863 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99993 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47141 * 89.99782 * 23 21 19 25 25 H 1.48502 * 109.47278 * 209.99777 * 23 21 19 26 26 H 1.48492 * 109.47356 * 330.00123 * 23 21 19 27 27 C 1.47031 * 108.70079 * 24.13497 * 18 17 16 28 28 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47259 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47392 * 59.99914 * 1 2 3 31 31 H 1.09002 * 109.47259 * 240.00293 * 2 1 3 32 32 H 1.09000 * 109.47392 * 120.00085 * 2 1 3 33 33 H 1.08007 * 125.62446 * 180.31175 * 8 7 6 34 34 H 1.09001 * 110.28988 * 43.92757 * 11 10 6 35 35 H 1.09007 * 110.37069 * 281.85177 * 11 10 6 36 36 H 1.09004 * 110.75780 * 268.14188 * 12 11 10 37 37 H 1.09000 * 110.91948 * 144.83806 * 12 11 10 38 38 H 1.08998 * 110.28777 * 315.78529 * 13 9 8 39 39 H 1.09001 * 110.28614 * 77.88509 * 13 9 8 40 40 H 1.08999 * 111.00300 * 271.94157 * 16 14 3 41 41 H 1.08996 * 110.99972 * 35.79150 * 16 14 3 42 42 H 1.08996 * 110.36566 * 204.15625 * 17 16 14 43 43 H 1.08998 * 110.37044 * 81.83089 * 17 16 14 44 44 H 0.97000 * 119.99626 * 180.02562 * 22 21 19 45 45 H 1.09008 * 109.87787 * 239.52041 * 27 18 17 46 46 H 1.08992 * 109.88551 * 118.35685 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1221 2.0593 1.1601 5 8 2.4567 3.2293 1.1533 6 6 1.8315 1.3872 2.4309 7 8 1.3414 0.1381 2.5736 8 6 1.2087 -0.1409 3.8769 9 6 1.6070 0.9330 4.5940 10 6 2.0099 1.9149 3.6767 11 6 2.4736 3.1439 4.4229 12 6 1.9096 2.9881 5.8515 13 6 1.7810 1.4569 6.0011 14 6 2.3937 2.0254 -1.2610 15 1 2.2225 1.3532 -2.1018 16 6 1.6180 3.3559 -1.4501 17 6 2.5827 4.1510 -2.3650 18 7 3.9323 3.7934 -1.8916 19 6 5.0607 4.5530 -2.0492 20 1 6.0065 4.2014 -1.6643 21 6 4.9889 5.7749 -2.7041 22 7 3.8364 6.2030 -3.1740 23 14 6.5280 6.8115 -2.9186 24 1 7.1958 6.4481 -4.1943 25 1 6.1568 8.2490 -2.9462 26 1 7.4551 6.5613 -1.7859 27 6 3.8660 2.4863 -1.2216 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.8433 -1.0708 4.2872 34 1 2.0740 4.0435 3.9548 35 1 3.5626 3.1838 4.4487 36 1 0.9348 3.4683 5.9365 37 1 2.6029 3.3913 6.5897 38 1 0.9101 1.2081 6.6074 39 1 2.6847 1.0437 6.4491 40 1 0.6625 3.1839 -1.9456 41 1 1.4759 3.8641 -0.4965 42 1 2.4135 5.2221 -2.2547 43 1 2.4534 3.8508 -3.4048 44 1 3.7863 7.0566 -3.6319 45 1 4.1966 2.5828 -0.1874 46 1 4.4937 1.7675 -1.7481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033916757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:59 Heat of formation + Delta-G solvation = 7.955768 kcal Electronic energy + Delta-G solvation = -27907.434662 eV Core-core repulsion = 24185.434019 eV Total energy + Delta-G solvation = -3722.000643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.88917 -41.21259 -38.51673 -38.28654 -36.77042 -34.36095 -31.78181 -31.68506 -31.34051 -30.69778 -29.02868 -27.90565 -26.46176 -24.92772 -23.67476 -22.97883 -22.11363 -21.78242 -21.13181 -19.62936 -18.95455 -18.25744 -17.48114 -17.34128 -17.02652 -16.67190 -16.07373 -16.00760 -15.68924 -15.42830 -15.25907 -14.86370 -14.46569 -14.30715 -13.99824 -13.93508 -13.68385 -13.46213 -13.30269 -13.06183 -12.87316 -12.74292 -12.68616 -12.59586 -12.40771 -12.20091 -12.09583 -12.06578 -12.04073 -12.01057 -11.82497 -11.41566 -10.83913 -10.73374 -10.25803 -9.78420 -9.44850 -8.88554 -7.77720 -5.21966 0.06397 1.35641 1.42530 1.46372 1.54562 1.58908 2.07341 2.15151 2.49409 3.07144 3.30790 3.51062 3.71738 3.83316 3.87134 3.97825 4.08717 4.11782 4.16851 4.20710 4.23595 4.39843 4.48497 4.54012 4.65660 4.70288 4.77076 4.81563 4.83900 4.89861 4.96787 4.99248 5.00482 5.03831 5.08490 5.11464 5.18867 5.30543 5.37118 5.41211 5.49967 5.59414 5.72255 5.78158 5.89516 6.29368 6.37715 7.06674 7.09494 7.76527 8.41022 9.24269 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.003895 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.291622 B = 7186.750582 C = 8447.549132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.593 5.593 4 C 0.586 3.414 5 O -0.545 6.545 6 C -0.086 4.086 7 O -0.145 6.145 8 C 0.020 3.980 9 C -0.229 4.229 10 C -0.130 4.130 11 C -0.066 4.066 12 C -0.111 4.111 13 C -0.040 4.040 14 C 0.152 3.848 15 H 0.126 0.874 16 C -0.143 4.143 17 C 0.163 3.837 18 N -0.618 5.618 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.274 1.274 27 C 0.132 3.868 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.066 0.934 43 H -0.001 1.001 44 H 0.247 0.753 45 H 0.009 0.991 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -18.854 17.470 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.375 3.625 5 O -0.425 6.425 6 C -0.137 4.137 7 O -0.041 6.041 8 C -0.048 4.048 9 C -0.230 4.230 10 C -0.134 4.134 11 C -0.103 4.103 12 C -0.148 4.148 13 C -0.077 4.077 14 C 0.049 3.951 15 H 0.143 0.857 16 C -0.182 4.182 17 C 0.038 3.962 18 N -0.344 5.344 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.811 3.189 24 H -0.207 1.207 25 H -0.217 1.217 26 H -0.199 1.199 27 C 0.006 3.994 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.274 0.726 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.017 0.983 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.618 -18.261 17.111 26.810 hybrid contribution 0.942 1.162 -0.491 1.575 sum -8.677 -17.099 16.620 25.375 Atomic orbital electron populations 1.22109 0.94415 1.03558 1.01404 1.22096 0.95730 0.79844 1.04854 1.47966 1.63966 1.15405 1.05095 1.17100 0.77650 0.85363 0.82341 1.90936 1.48631 1.16666 1.86245 1.20861 1.12548 0.86424 0.93916 1.84403 1.64588 1.27586 1.27502 1.24407 1.00491 1.00739 0.79197 1.21746 1.07559 0.94786 0.98927 1.21605 0.99850 0.99916 0.91985 1.20671 1.00619 0.93529 0.95500 1.22398 1.02057 0.96454 0.93918 1.20501 1.03686 0.93789 0.89713 1.22033 0.93221 0.94482 0.85406 0.85652 1.23240 0.98273 0.96153 1.00575 1.21592 0.82508 0.99657 0.92465 1.44592 1.05590 1.18377 1.65877 1.19411 0.87517 0.99629 1.30344 0.90825 1.25658 1.00498 0.98950 1.00827 1.70071 1.24416 1.21330 1.44022 0.85011 0.78353 0.77518 0.78027 1.20652 1.21694 1.19922 1.21593 0.95559 0.87382 0.94881 0.88591 0.93994 0.92953 0.87867 0.88631 0.72589 0.92585 0.90685 0.90546 0.88352 0.88418 0.89083 0.89857 0.92075 0.91554 0.98304 0.94294 0.97263 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.75 71.98 0.70 -2.17 16 2 C 0.10 2.04 5.71 86.38 0.49 2.53 16 3 N -0.59 -19.18 2.55 -795.93 -2.03 -21.22 16 4 C 0.59 22.21 6.67 86.44 0.58 22.79 16 5 O -0.55 -26.31 13.24 -4.32 -0.06 -26.37 16 6 C -0.09 -2.64 6.58 24.06 0.16 -2.48 16 7 O -0.14 -3.13 6.15 -5.35 -0.03 -3.17 16 8 C 0.02 0.31 12.08 67.11 0.81 1.12 16 9 C -0.23 -4.49 6.93 -19.94 -0.14 -4.63 16 10 C -0.13 -3.74 6.66 -19.66 -0.13 -3.87 16 11 C -0.07 -1.78 6.76 30.43 0.21 -1.57 16 12 C -0.11 -1.89 7.06 31.53 0.22 -1.66 16 13 C -0.04 -0.56 6.76 30.46 0.21 -0.35 16 14 C 0.15 5.74 3.44 46.18 0.16 5.90 16 15 H 0.13 3.89 7.80 -2.39 -0.02 3.87 16 16 C -0.14 -6.26 6.39 31.99 0.20 -6.06 16 17 C 0.16 8.90 5.89 86.85 0.51 9.41 16 18 N -0.62 -35.61 3.39 -691.97 -2.35 -37.96 16 19 C -0.24 -14.82 10.27 84.04 0.86 -13.96 16 20 H 0.07 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 22 N -0.95 -60.27 10.09 21.65 0.22 -60.05 16 23 Si 0.98 48.81 29.55 68.60 2.03 50.84 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 27 C 0.13 6.29 6.51 86.73 0.56 6.85 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.90 7.12 -2.39 -0.02 0.88 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.77 7.84 -2.39 -0.02 1.75 16 32 H 0.10 1.90 5.36 -2.39 -0.01 1.89 16 33 H 0.26 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.06 3.02 5.67 -2.39 -0.01 3.01 16 42 H 0.07 4.16 5.87 -2.39 -0.01 4.15 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.01 0.49 6.40 -2.38 -0.02 0.47 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -82.66 359.07 4.63 -78.03 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.98 Total: 11.67 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.87 Total: 8.22 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -4.16 Total: -119.22 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.09 Total: -29.54 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -82.66 4.63 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033916757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.986 kcal (2) G-P(sol) polarization free energy of solvation -82.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds