Wall clock time and date at job start Tue Mar 31 2020 13:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47215 * 2 1 4 4 C 1.34770 * 119.99940 * 276.01121 * 3 2 1 5 5 O 1.21284 * 120.00117 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.00343 * 359.97438 * 4 3 2 7 7 H 1.09001 * 115.54955 * 34.32779 * 6 4 3 8 8 C 1.53004 * 117.49934 * 248.62609 * 6 4 3 9 9 C 1.52998 * 117.50263 * 180.02562 * 6 4 3 10 10 H 1.09001 * 117.49796 * 359.97438 * 9 6 4 11 11 C 1.50694 * 117.49664 * 215.00042 * 9 6 4 12 12 C 1.34516 * 125.78802 * 120.00139 * 11 9 6 13 13 C 1.41385 * 106.84283 * 179.97438 * 12 11 9 14 14 C 1.34518 * 106.83746 * 0.02562 * 13 12 11 15 15 O 1.34297 * 125.79299 * 299.69126 * 11 9 6 16 16 C 1.46505 * 119.99815 * 96.00883 * 3 2 1 17 17 H 1.09006 * 110.88064 * 187.81999 * 16 3 2 18 18 C 1.55154 * 111.00737 * 311.73751 * 16 3 2 19 19 C 1.54315 * 102.94305 * 153.57458 * 18 16 3 20 20 N 1.47016 * 107.27436 * 337.81157 * 19 18 16 21 21 C 1.36939 * 125.65222 * 178.89792 * 20 19 18 22 22 H 1.07995 * 120.00068 * 175.01186 * 21 20 19 23 23 C 1.38813 * 119.99939 * 355.02227 * 21 20 19 24 24 N 1.31618 * 120.00116 * 5.12312 * 23 21 20 25 25 Si 1.86798 * 120.00194 * 185.13058 * 23 21 20 26 26 H 1.48503 * 109.47278 * 94.99551 * 25 23 21 27 27 H 1.48494 * 109.47243 * 214.99587 * 25 23 21 28 28 H 1.48500 * 109.46877 * 334.99573 * 25 23 21 29 29 C 1.47427 * 108.70462 * 358.93874 * 20 19 18 30 30 H 1.09000 * 109.47232 * 294.98720 * 1 2 3 31 31 H 1.08999 * 109.46667 * 54.98461 * 1 2 3 32 32 H 1.08998 * 109.47055 * 174.98781 * 1 2 3 33 33 H 1.08993 * 109.47447 * 239.99971 * 2 1 3 34 34 H 1.09000 * 109.46747 * 119.99873 * 2 1 3 35 35 H 1.09000 * 117.49522 * 359.97438 * 8 6 4 36 36 H 1.08999 * 117.49788 * 145.01741 * 8 6 4 37 37 H 1.08005 * 126.58008 * 0.03011 * 12 11 9 38 38 H 1.08001 * 126.58081 * 179.97438 * 13 12 11 39 39 H 1.08002 * 125.78550 * 179.97438 * 14 13 12 40 40 H 1.09006 * 110.71727 * 35.21144 * 18 16 3 41 41 H 1.09000 * 110.71986 * 271.94681 * 18 16 3 42 42 H 1.08999 * 109.88690 * 218.38594 * 19 18 16 43 43 H 1.09013 * 109.87986 * 97.22940 * 19 18 16 44 44 H 0.96995 * 120.00793 * 179.97438 * 24 23 21 45 45 H 1.09001 * 110.36933 * 142.96435 * 29 20 19 46 46 H 1.08998 * 110.36451 * 265.18187 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1278 2.0573 -1.1607 5 8 2.5325 3.2006 -1.1608 6 6 1.7483 1.3923 -2.4588 7 1 0.9157 0.6912 -2.4019 8 6 2.8739 1.0746 -3.4453 9 6 1.8955 2.2122 -3.7421 10 1 2.2664 3.2328 -3.6475 11 6 0.8778 1.9890 -4.8309 12 6 0.0527 2.9217 -5.3396 13 6 -0.7263 2.2824 -6.3312 14 6 -0.3311 0.9972 -6.3688 15 8 0.6448 0.8267 -5.4619 16 6 2.3878 2.0275 1.2618 17 1 2.5973 3.0863 1.1093 18 6 1.2839 1.8271 2.3335 19 6 2.0679 1.9215 3.6592 20 7 3.4739 1.6154 3.3577 21 6 4.5020 1.6132 4.2622 22 1 5.4884 1.2960 3.9577 23 6 4.2763 2.0185 5.5705 24 7 3.0556 2.3084 5.9684 25 14 5.7049 2.1529 6.7664 26 1 6.1987 3.5532 6.7924 27 1 5.2512 1.7627 8.1254 28 1 6.8006 1.2496 6.3320 29 6 3.5938 1.3120 1.9200 30 1 -0.3634 0.4341 0.9315 31 1 -0.3632 0.5897 -0.8417 32 1 -0.3633 -1.0237 -0.0898 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8888 1.3469 -3.1555 36 1 2.7819 0.1642 -4.0376 37 1 -0.0032 3.9599 -5.0473 38 1 -1.4924 2.7383 -6.9410 39 1 -0.7281 0.2331 -7.0207 40 1 0.8188 0.8467 2.2294 41 1 0.5366 2.6181 2.2700 42 1 1.6760 1.1980 4.3741 43 1 1.9871 2.9294 4.0667 44 1 2.8977 2.5912 6.8826 45 1 4.5303 1.7066 1.5258 46 1 3.5360 0.2364 1.7532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033962040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:38 Heat of formation + Delta-G solvation = 41.271698 kcal Electronic energy + Delta-G solvation = -26812.329329 eV Core-core repulsion = 23091.773373 eV Total energy + Delta-G solvation = -3720.555956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.83003 -40.26370 -37.88724 -36.36918 -35.29466 -33.23037 -32.27586 -30.43737 -29.81138 -29.19058 -27.34056 -25.02393 -24.11103 -23.45743 -23.03540 -21.91850 -20.56533 -20.12002 -20.03114 -18.64943 -17.99409 -17.07117 -16.97610 -16.36125 -16.00625 -15.32724 -14.90967 -14.63363 -14.33951 -14.06935 -13.82109 -13.45713 -13.12266 -13.06576 -12.99260 -12.75520 -12.61261 -12.41754 -12.17097 -12.12834 -11.91735 -11.56259 -11.24521 -11.11006 -10.92485 -10.89427 -10.77827 -10.69566 -10.24906 -10.13513 -10.08532 -9.79601 -9.75792 -9.59474 -8.60458 -8.59117 -8.39176 -6.84263 -5.72599 -3.06106 1.39712 2.30208 2.57449 2.67072 3.08795 3.40949 3.46178 3.47840 3.68371 4.17400 4.43264 4.49876 4.52968 4.66995 4.80046 4.86560 4.98869 5.04883 5.18146 5.34362 5.38797 5.45187 5.46140 5.54175 5.59448 5.64572 5.68556 5.71138 5.74223 5.81473 5.82659 5.85796 5.86513 6.12701 6.24242 6.24426 6.35724 6.48877 6.58937 6.70652 6.89138 6.97479 7.51887 7.59241 7.62336 7.81569 8.23632 8.31350 9.20673 9.80766 10.46127 11.39138 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032056 B = 0.002538 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.274923 B =11028.485542 C =11267.502304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 N -0.590 5.590 4 C 0.544 3.456 5 O -0.542 6.542 6 C -0.172 4.172 7 H 0.128 0.872 8 C -0.137 4.137 9 C -0.052 4.052 10 H 0.148 0.852 11 C 0.021 3.979 12 C -0.202 4.202 13 C -0.212 4.212 14 C -0.045 4.045 15 O -0.176 6.176 16 C 0.124 3.876 17 H 0.105 0.895 18 C -0.154 4.154 19 C 0.178 3.822 20 N -0.603 5.603 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.041 0.959 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -5.354 -23.095 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.331 3.669 5 O -0.419 6.419 6 C -0.194 4.194 7 H 0.146 0.854 8 C -0.175 4.175 9 C -0.070 4.070 10 H 0.165 0.835 11 C -0.029 4.029 12 C -0.221 4.221 13 C -0.231 4.231 14 C -0.112 4.112 15 O -0.072 6.072 16 C 0.020 3.980 17 H 0.123 0.877 18 C -0.193 4.193 19 C 0.053 3.947 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.219 0.781 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.998 -4.975 -22.766 24.637 hybrid contribution 0.288 0.140 0.601 0.681 sum -7.710 -4.836 -22.165 23.960 Atomic orbital electron populations 1.22394 0.95953 1.02106 1.03027 1.21553 0.94316 0.82718 1.03525 1.47844 1.63974 1.13894 1.06436 1.19449 0.77539 0.85766 0.84124 1.90694 1.46742 1.17731 1.86758 1.22500 1.03660 1.03985 0.89213 0.85410 1.23079 0.95264 0.99430 0.99678 1.20498 0.96949 0.99348 0.90243 0.83452 1.21377 1.00233 0.83686 0.97610 1.21579 0.99242 1.01007 1.00298 1.21849 1.04157 0.94483 1.02637 1.24012 0.92568 0.98837 0.95807 1.83970 1.46400 1.34550 1.42278 1.22459 0.96090 0.98395 0.81006 0.87658 1.23336 0.97619 1.00968 0.97412 1.21162 0.82541 1.00777 0.90179 1.44381 1.04852 1.81840 1.01885 1.19057 0.89081 1.37760 0.89780 0.90382 1.24831 0.96795 1.01369 0.97332 1.69959 1.18140 1.51709 1.16987 0.86098 0.81345 0.77835 0.80489 1.21564 1.21750 1.20621 1.21768 0.95380 0.96247 0.86223 0.91282 0.92670 0.91629 0.90690 0.89213 0.87106 0.87156 0.83287 0.83422 0.78089 0.91563 0.91965 0.93994 0.93036 0.93710 0.94085 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.68 37.16 0.36 -1.46 16 2 C 0.10 1.19 4.78 -4.04 -0.02 1.18 16 3 N -0.59 -8.84 2.52 -163.67 -0.41 -9.25 16 4 C 0.54 8.21 7.41 -10.99 -0.08 8.13 16 5 O -0.54 -10.13 15.65 5.55 0.09 -10.05 16 6 C -0.17 -1.94 4.44 -91.77 -0.41 -2.35 16 7 H 0.13 1.28 6.04 -51.93 -0.31 0.97 16 8 C -0.14 -1.32 9.87 -26.75 -0.26 -1.58 16 9 C -0.05 -0.56 5.75 -91.80 -0.53 -1.09 16 10 H 0.15 1.69 7.67 -51.93 -0.40 1.29 16 11 C 0.02 0.22 6.80 -35.63 -0.24 -0.02 16 12 C -0.20 -2.05 10.81 -39.70 -0.43 -2.48 16 13 C -0.21 -1.81 10.91 -39.70 -0.43 -2.24 16 14 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 15 O -0.18 -1.77 10.36 5.72 0.06 -1.71 16 16 C 0.12 2.30 3.42 -65.78 -0.22 2.08 16 17 H 0.11 2.20 7.05 -51.93 -0.37 1.84 16 18 C -0.15 -2.87 6.01 -24.90 -0.15 -3.02 16 19 C 0.18 4.31 5.38 -3.07 -0.02 4.30 16 20 N -0.60 -15.47 3.39 -170.08 -0.58 -16.05 16 21 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 24 N -0.92 -27.08 10.34 55.49 0.57 -26.50 16 25 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.76 6.80 -2.53 -0.02 2.75 16 30 H 0.07 0.80 6.05 -51.93 -0.31 0.49 16 31 H 0.05 0.56 6.88 -51.93 -0.36 0.20 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.72 6.99 -51.93 -0.36 0.36 16 34 H 0.09 1.14 6.41 -51.93 -0.33 0.81 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.11 0.90 7.96 -51.93 -0.41 0.49 16 37 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.20 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.07 1.10 5.05 -51.93 -0.26 0.84 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 1.10 7.65 -51.93 -0.40 0.71 16 43 H 0.05 1.39 7.25 -51.92 -0.38 1.02 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.02 0.40 6.71 -51.93 -0.35 0.06 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -32.90 367.63 -8.85 -41.75 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.75 Total: 1.77 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.35 Total: -2.68 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.42 Total: -51.80 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.15 Total: -11.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.90 -8.85 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.018 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds