Wall clock time and date at job start Tue Mar 31 2020 13:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47215 * 2 1 4 4 C 1.34770 * 119.99940 * 276.01121 * 3 2 1 5 5 O 1.21284 * 120.00117 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.00343 * 359.97438 * 4 3 2 7 7 H 1.09001 * 115.54955 * 34.32779 * 6 4 3 8 8 C 1.53004 * 117.49934 * 248.62609 * 6 4 3 9 9 C 1.52998 * 117.50263 * 180.02562 * 6 4 3 10 10 H 1.09001 * 117.49796 * 359.97438 * 9 6 4 11 11 C 1.50694 * 117.49664 * 215.00042 * 9 6 4 12 12 C 1.34516 * 125.78802 * 120.00139 * 11 9 6 13 13 C 1.41385 * 106.84283 * 179.97438 * 12 11 9 14 14 C 1.34518 * 106.83746 * 0.02562 * 13 12 11 15 15 O 1.34297 * 125.79299 * 299.69126 * 11 9 6 16 16 C 1.46505 * 119.99815 * 96.00883 * 3 2 1 17 17 H 1.09006 * 110.88064 * 187.81999 * 16 3 2 18 18 C 1.55154 * 111.00737 * 311.73751 * 16 3 2 19 19 C 1.54315 * 102.94305 * 153.57458 * 18 16 3 20 20 N 1.47016 * 107.27436 * 337.81157 * 19 18 16 21 21 C 1.36939 * 125.65222 * 178.89792 * 20 19 18 22 22 H 1.07995 * 120.00068 * 175.01186 * 21 20 19 23 23 C 1.38813 * 119.99939 * 355.02227 * 21 20 19 24 24 N 1.31618 * 120.00116 * 5.12312 * 23 21 20 25 25 Si 1.86798 * 120.00194 * 185.13058 * 23 21 20 26 26 H 1.48503 * 109.47278 * 94.99551 * 25 23 21 27 27 H 1.48494 * 109.47243 * 214.99587 * 25 23 21 28 28 H 1.48500 * 109.46877 * 334.99573 * 25 23 21 29 29 C 1.47427 * 108.70462 * 358.93874 * 20 19 18 30 30 H 1.09000 * 109.47232 * 294.98720 * 1 2 3 31 31 H 1.08999 * 109.46667 * 54.98461 * 1 2 3 32 32 H 1.08998 * 109.47055 * 174.98781 * 1 2 3 33 33 H 1.08993 * 109.47447 * 239.99971 * 2 1 3 34 34 H 1.09000 * 109.46747 * 119.99873 * 2 1 3 35 35 H 1.09000 * 117.49522 * 359.97438 * 8 6 4 36 36 H 1.08999 * 117.49788 * 145.01741 * 8 6 4 37 37 H 1.08005 * 126.58008 * 0.03011 * 12 11 9 38 38 H 1.08001 * 126.58081 * 179.97438 * 13 12 11 39 39 H 1.08002 * 125.78550 * 179.97438 * 14 13 12 40 40 H 1.09006 * 110.71727 * 35.21144 * 18 16 3 41 41 H 1.09000 * 110.71986 * 271.94681 * 18 16 3 42 42 H 1.08999 * 109.88690 * 218.38594 * 19 18 16 43 43 H 1.09013 * 109.87986 * 97.22940 * 19 18 16 44 44 H 0.96995 * 120.00793 * 179.97438 * 24 23 21 45 45 H 1.09001 * 110.36933 * 142.96435 * 29 20 19 46 46 H 1.08998 * 110.36451 * 265.18187 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1278 2.0573 -1.1607 5 8 2.5325 3.2006 -1.1608 6 6 1.7483 1.3923 -2.4588 7 1 0.9157 0.6912 -2.4019 8 6 2.8739 1.0746 -3.4453 9 6 1.8955 2.2122 -3.7421 10 1 2.2664 3.2328 -3.6475 11 6 0.8778 1.9890 -4.8309 12 6 0.0527 2.9217 -5.3396 13 6 -0.7263 2.2824 -6.3312 14 6 -0.3311 0.9972 -6.3688 15 8 0.6448 0.8267 -5.4619 16 6 2.3878 2.0275 1.2618 17 1 2.5973 3.0863 1.1093 18 6 1.2839 1.8271 2.3335 19 6 2.0679 1.9215 3.6592 20 7 3.4739 1.6154 3.3577 21 6 4.5020 1.6132 4.2622 22 1 5.4884 1.2960 3.9577 23 6 4.2763 2.0185 5.5705 24 7 3.0556 2.3084 5.9684 25 14 5.7049 2.1529 6.7664 26 1 6.1987 3.5532 6.7924 27 1 5.2512 1.7627 8.1254 28 1 6.8006 1.2496 6.3320 29 6 3.5938 1.3120 1.9200 30 1 -0.3634 0.4341 0.9315 31 1 -0.3632 0.5897 -0.8417 32 1 -0.3633 -1.0237 -0.0898 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8888 1.3469 -3.1555 36 1 2.7819 0.1642 -4.0376 37 1 -0.0032 3.9599 -5.0473 38 1 -1.4924 2.7383 -6.9410 39 1 -0.7281 0.2331 -7.0207 40 1 0.8188 0.8467 2.2294 41 1 0.5366 2.6181 2.2700 42 1 1.6760 1.1980 4.3741 43 1 1.9871 2.9294 4.0667 44 1 2.8977 2.5912 6.8826 45 1 4.5303 1.7066 1.5258 46 1 3.5360 0.2364 1.7532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033962040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:37 Heat of formation + Delta-G solvation = 22.451215 kcal Electronic energy + Delta-G solvation = -26813.145446 eV Core-core repulsion = 23091.773373 eV Total energy + Delta-G solvation = -3721.372073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.50292 -41.47329 -39.33626 -37.48191 -36.71543 -34.20359 -33.89597 -31.63196 -31.09631 -30.44225 -28.96401 -26.76561 -25.39315 -24.27121 -24.04366 -22.60114 -22.07029 -21.70011 -20.97287 -19.83943 -18.96907 -18.90493 -17.97120 -17.51485 -16.84172 -16.69949 -16.29780 -16.05162 -15.72117 -15.53665 -14.81659 -14.75187 -14.33785 -14.16786 -14.01537 -13.82824 -13.73589 -13.68245 -13.50080 -13.40343 -12.95674 -12.90005 -12.81312 -12.65292 -12.37856 -12.16815 -12.04227 -11.95840 -11.90443 -11.77586 -11.60496 -11.46396 -10.87805 -10.80623 -10.71929 -9.71746 -9.28005 -8.92625 -7.88079 -5.24234 0.69729 1.40260 1.44949 1.47597 1.56052 1.67892 1.84524 2.07208 2.48821 2.81973 3.30788 3.32370 3.52308 3.64350 3.66963 3.88425 3.92207 4.01934 4.09127 4.12267 4.18067 4.18573 4.37662 4.40616 4.53403 4.54004 4.61492 4.65501 4.82001 4.85714 4.88597 4.91339 4.93378 4.99814 5.04153 5.06881 5.14660 5.22039 5.39429 5.43255 5.58699 5.60804 5.61699 5.71219 6.16253 6.21673 6.41048 7.06558 7.10817 7.72575 8.36841 9.22335 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032056 B = 0.002538 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.274923 B =11028.485542 C =11267.502304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.588 5.588 4 C 0.541 3.459 5 O -0.586 6.586 6 C -0.171 4.171 7 H 0.148 0.852 8 C -0.119 4.119 9 C -0.055 4.055 10 H 0.132 0.868 11 C 0.003 3.997 12 C -0.217 4.217 13 C -0.228 4.228 14 C -0.035 4.035 15 O -0.183 6.183 16 C 0.140 3.860 17 H 0.077 0.923 18 C -0.133 4.133 19 C 0.187 3.813 20 N -0.624 5.624 21 C -0.245 4.245 22 H 0.082 0.918 23 C -0.064 4.064 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.133 3.867 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.241 0.759 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.248 0.752 45 H 0.031 0.969 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 -7.564 -25.490 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.318 5.318 4 C 0.330 3.670 5 O -0.466 6.466 6 C -0.191 4.191 7 H 0.166 0.834 8 C -0.156 4.156 9 C -0.073 4.073 10 H 0.150 0.850 11 C -0.046 4.046 12 C -0.236 4.236 13 C -0.247 4.247 14 C -0.102 4.102 15 O -0.080 6.080 16 C 0.035 3.965 17 H 0.095 0.905 18 C -0.172 4.172 19 C 0.062 3.938 20 N -0.351 5.351 21 C -0.374 4.374 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.191 1.191 29 C 0.006 3.994 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.185 0.815 39 H 0.257 0.743 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.590 -7.222 -25.202 27.588 hybrid contribution 0.450 0.828 1.248 1.564 sum -8.140 -6.394 -23.954 26.095 Atomic orbital electron populations 1.22347 0.94527 1.03773 1.02329 1.21847 0.95459 0.80582 1.04643 1.47855 1.63848 1.15160 1.04985 1.20116 0.76414 0.85277 0.85167 1.90678 1.48669 1.19846 1.87433 1.22394 1.05148 1.04471 0.87114 0.83434 1.23180 0.94491 0.99691 0.98232 1.20373 0.97718 0.99073 0.90185 0.85007 1.21264 1.00816 0.84269 0.98280 1.21845 0.99625 1.01259 1.00919 1.22155 1.04781 0.94976 1.02766 1.24821 0.91030 0.99554 0.94788 1.83958 1.47110 1.34175 1.42721 1.21920 0.94917 0.96937 0.82735 0.90476 1.23139 0.97066 1.02902 0.94110 1.20899 0.82899 0.97578 0.92447 1.44657 1.04990 1.81862 1.03622 1.19438 0.89939 1.37415 0.90573 0.90018 1.25690 0.99315 1.01559 0.99141 1.70173 1.19990 1.52641 1.16972 0.85047 0.78591 0.77705 0.77917 1.21621 1.21829 1.19082 1.21869 0.96079 0.97368 0.84053 0.92832 0.92316 0.88932 0.87674 0.89980 0.87422 0.84883 0.83364 0.81535 0.74263 0.88909 0.90912 0.96759 0.96942 0.94247 0.95065 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.68 71.98 0.70 -2.29 16 2 C 0.10 1.98 4.78 86.38 0.41 2.39 16 3 N -0.59 -16.89 2.52 -790.12 -1.99 -18.89 16 4 C 0.54 15.93 7.41 87.66 0.65 16.58 16 5 O -0.59 -22.39 15.65 -3.04 -0.05 -22.44 16 6 C -0.17 -3.50 4.44 -11.54 -0.05 -3.55 16 7 H 0.15 2.45 6.04 -2.39 -0.01 2.44 16 8 C -0.12 -2.02 9.87 30.58 0.30 -1.72 16 9 C -0.05 -1.13 5.75 -11.56 -0.07 -1.20 16 10 H 0.13 3.11 7.67 -2.39 -0.02 3.09 16 11 C 0.00 0.07 6.80 24.83 0.17 0.24 16 12 C -0.22 -4.18 10.81 22.19 0.24 -3.94 16 13 C -0.23 -3.36 10.91 22.19 0.24 -3.12 16 14 C -0.04 -0.44 12.09 66.97 0.81 0.37 16 15 O -0.18 -3.17 10.36 -2.44 -0.03 -3.20 16 16 C 0.14 5.23 3.42 46.38 0.16 5.39 16 17 H 0.08 3.35 7.05 -2.38 -0.02 3.34 16 18 C -0.13 -4.97 6.01 31.78 0.19 -4.78 16 19 C 0.19 9.39 5.38 86.73 0.47 9.86 16 20 N -0.62 -32.88 3.39 -692.00 -2.35 -35.23 16 21 C -0.24 -14.02 10.27 84.03 0.86 -13.15 16 22 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 23 C -0.06 -3.69 5.48 84.86 0.47 -3.23 16 24 N -0.95 -57.77 10.34 21.65 0.22 -57.54 16 25 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.13 5.62 6.80 86.85 0.59 6.21 16 30 H 0.05 1.11 6.05 -2.39 -0.01 1.09 16 31 H 0.06 1.00 6.88 -2.39 -0.02 0.98 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.58 6.99 -2.39 -0.02 1.56 16 34 H 0.08 1.86 6.41 -2.39 -0.02 1.84 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.13 1.69 7.96 -2.39 -0.02 1.67 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.24 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.09 2.98 5.05 -2.38 -0.01 2.96 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.01 0.78 7.65 -2.39 -0.02 0.76 16 43 H 0.01 0.71 7.25 -2.38 -0.02 0.69 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.04 1.56 6.71 -2.39 -0.02 1.54 16 Total: -1.00 -74.56 367.63 4.96 -69.60 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.98 Total: 15.20 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.14 Total: 4.07 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -4.12 Total: -111.66 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.64 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.56 4.96 -69.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.056 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds