Wall clock time and date at job start Tue Mar 31 2020 13:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47092 * 2 1 4 4 C 1.34776 * 120.00212 * 249.30861 * 3 2 1 5 5 O 1.21583 * 120.00486 * 183.36997 * 4 3 2 6 6 C 1.47543 * 119.99563 * 3.37486 * 4 3 2 7 7 C 1.39705 * 120.19362 * 30.52594 * 6 4 3 8 8 C 1.37781 * 119.90829 * 179.97438 * 7 6 4 9 9 C 1.38545 * 120.30310 * 359.97438 * 8 7 6 10 10 C 1.38058 * 120.38983 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.08236 * 359.75014 * 10 9 8 12 12 O 1.35649 * 120.15389 * 180.27643 * 11 10 9 13 13 C 1.42905 * 116.99601 * 0.20688 * 12 11 10 14 14 C 1.46506 * 120.00050 * 69.31344 * 3 2 1 15 15 H 1.08999 * 110.91694 * 9.71419 * 14 3 2 16 16 C 1.55152 * 111.00116 * 245.80953 * 14 3 2 17 17 C 1.54328 * 102.94684 * 277.42867 * 16 14 3 18 18 N 1.47022 * 107.26503 * 337.80641 * 17 16 14 19 19 C 1.36940 * 125.64526 * 178.90293 * 18 17 16 20 20 H 1.07994 * 120.00188 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00086 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99471 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47262 * 60.00276 * 23 21 19 25 25 H 1.48496 * 109.46958 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47078 * 299.99982 * 23 21 19 27 27 C 1.47425 * 108.70864 * 358.94354 * 18 17 16 28 28 H 1.08998 * 109.47081 * 60.00127 * 1 2 3 29 29 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46728 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47082 * 239.99609 * 2 1 3 32 32 H 1.09012 * 109.46693 * 120.00259 * 2 1 3 33 33 H 1.08006 * 120.04427 * 359.95209 * 7 6 4 34 34 H 1.08006 * 119.84886 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.80870 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.95869 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.47099 * 299.99835 * 13 12 11 38 38 H 1.09004 * 109.47185 * 59.99780 * 13 12 11 39 39 H 1.09000 * 109.46944 * 180.02562 * 13 12 11 40 40 H 1.08997 * 110.72011 * 159.06446 * 16 14 3 41 41 H 1.08997 * 110.72250 * 35.79310 * 16 14 3 42 42 H 1.08996 * 109.87899 * 97.22247 * 17 16 14 43 43 H 1.08995 * 109.88343 * 218.24135 * 17 16 14 44 44 H 0.97000 * 119.99624 * 179.97438 * 22 21 19 45 45 H 1.09004 * 110.36533 * 142.96207 * 27 18 17 46 46 H 1.08995 * 110.36537 * 265.17940 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.6318 1.8791 -1.0919 5 8 3.0915 3.0045 -1.0709 6 6 2.7455 1.0584 -2.3127 7 6 1.7636 0.1125 -2.6174 8 6 1.8753 -0.6504 -3.7593 9 6 2.9574 -0.4836 -4.6083 10 6 3.9349 0.4475 -4.3193 11 6 3.8361 1.2273 -3.1764 12 8 4.7928 2.1466 -2.8939 13 6 5.8746 2.2627 -3.8205 14 6 1.8400 2.2212 1.1870 15 1 1.4873 1.6304 2.0324 16 6 0.8771 3.4017 0.8931 17 6 1.7998 4.4423 0.2242 18 7 3.1772 4.1311 0.6335 19 6 4.2997 4.8082 0.2375 20 1 5.2708 4.4998 0.5953 21 6 4.1893 5.8912 -0.6240 22 7 3.0056 6.2674 -1.0597 23 14 5.7203 6.8152 -1.1636 24 1 6.6359 5.8852 -1.8721 25 1 5.3349 7.9218 -2.0758 26 1 6.4073 7.3738 0.0286 27 6 3.1500 2.9688 1.5400 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 0.9182 -0.0209 -1.9585 34 1 1.1159 -1.3817 -3.9937 35 1 3.0368 -1.0856 -5.5015 36 1 4.7752 0.5720 -4.9861 37 1 6.3968 1.3085 -3.8908 38 1 5.4853 2.5369 -4.8011 39 1 6.5669 3.0309 -3.4762 40 1 0.4575 3.7966 1.8183 41 1 0.0855 3.0930 0.2104 42 1 1.7108 4.3740 -0.8600 43 1 1.5297 5.4448 0.5559 44 1 2.9284 7.0243 -1.6613 45 1 4.0130 2.3276 1.3606 46 1 3.1324 3.2984 2.5788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034021157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:03 Heat of formation + Delta-G solvation = 41.762384 kcal Electronic energy + Delta-G solvation = -29347.029189 eV Core-core repulsion = 25626.494511 eV Total energy + Delta-G solvation = -3720.534678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75434 -40.48579 -38.51372 -37.41481 -36.59370 -34.15115 -32.06912 -31.48420 -30.85940 -30.54340 -28.78209 -28.12067 -26.33032 -24.87771 -23.65132 -23.17961 -22.19876 -21.73825 -19.87238 -18.80484 -18.59490 -17.91035 -17.33911 -16.84149 -16.62208 -16.37415 -16.22411 -15.97549 -15.80388 -15.58594 -14.95133 -14.49540 -14.20386 -14.01238 -13.77664 -13.63763 -13.48641 -13.41180 -13.05536 -12.96248 -12.76637 -12.72317 -12.47250 -12.40307 -12.28998 -12.06811 -12.02275 -11.96524 -11.83015 -11.59553 -11.36929 -11.32039 -10.49426 -10.03241 -9.74624 -9.23396 -9.07739 -8.19784 -7.57724 -4.79363 0.11405 0.49106 1.39204 1.44424 1.49243 2.30396 2.32462 2.46165 2.63186 2.99314 3.60420 3.74348 3.86614 3.92564 4.01375 4.07929 4.17437 4.20660 4.27622 4.28093 4.40188 4.42951 4.48033 4.50528 4.60431 4.60741 4.71627 4.77834 4.89998 4.92774 4.99978 5.07389 5.08916 5.11496 5.22617 5.32712 5.41070 5.47370 5.54819 5.56388 5.86902 5.88882 6.06266 6.12893 6.46684 6.52718 6.88835 7.37846 7.95075 8.09512 8.73454 9.54470 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.007193 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.235784 B = 3891.583053 C = 5737.901955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.079 3.921 3 N -0.608 5.608 4 C 0.488 3.512 5 O -0.445 6.445 6 C -0.188 4.188 7 C -0.073 4.073 8 C -0.165 4.165 9 C -0.059 4.059 10 C -0.226 4.226 11 C 0.142 3.858 12 O -0.324 6.324 13 C 0.023 3.977 14 C 0.151 3.849 15 H 0.130 0.870 16 C -0.143 4.143 17 C 0.207 3.793 18 N -0.576 5.576 19 C -0.180 4.180 20 H 0.055 0.945 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.955 3.045 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.013 0.987 43 H -0.019 1.019 44 H 0.230 0.770 45 H 0.017 0.983 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 -21.743 -3.868 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.042 4.042 3 N -0.345 5.345 4 C 0.274 3.726 5 O -0.314 6.314 6 C -0.192 4.192 7 C -0.091 4.091 8 C -0.183 4.183 9 C -0.077 4.077 10 C -0.245 4.245 11 C 0.095 3.905 12 O -0.236 6.236 13 C -0.071 4.071 14 C 0.046 3.954 15 H 0.148 0.852 16 C -0.182 4.182 17 C 0.082 3.918 18 N -0.300 5.300 19 C -0.311 4.311 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.601 5.601 23 Si 0.787 3.213 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.208 1.208 27 C -0.003 4.003 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.031 0.969 43 H -0.001 1.001 44 H 0.040 0.960 45 H 0.036 0.964 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.648 -20.786 -3.811 21.637 hybrid contribution 1.298 1.274 -0.736 1.962 sum -3.350 -19.512 -4.547 20.313 Atomic orbital electron populations 1.22231 0.94391 1.03684 1.02273 1.22370 0.95585 0.81658 1.04603 1.47791 1.60125 1.13616 1.13014 1.18985 0.81251 0.88176 0.84209 1.91624 1.41721 1.16926 1.81123 1.19837 0.97917 1.03262 0.98209 1.22054 0.97423 0.91982 0.97640 1.21429 1.00137 1.02220 0.94473 1.21505 0.91875 0.94941 0.99337 1.21469 1.04214 1.01059 0.97715 1.19563 0.88620 0.88534 0.93814 1.86383 1.33284 1.54582 1.49373 1.23208 0.87889 1.03121 0.92918 1.22127 0.94361 0.90997 0.87883 0.85244 1.23205 0.97563 0.96612 1.00868 1.20696 0.83023 0.92151 0.95933 1.44213 1.02490 1.31991 1.51262 1.18888 0.85907 1.05784 1.20478 0.92742 1.25190 0.98389 1.00904 1.01242 1.70205 1.22155 1.28986 1.38768 0.85458 0.80268 0.77858 0.77727 1.21553 1.22610 1.20825 1.21964 0.96175 0.89009 0.93149 0.93176 0.88593 0.91872 0.87998 0.90067 0.81612 0.81759 0.81974 0.83598 0.90242 0.91743 0.89531 0.89969 0.91365 0.96888 1.00052 0.96031 0.96442 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.20 71.98 0.66 -2.09 16 2 C 0.08 1.72 5.57 86.38 0.48 2.20 16 3 N -0.61 -20.57 2.63 -793.84 -2.09 -22.66 16 4 C 0.49 21.19 6.81 86.70 0.59 21.78 16 5 O -0.45 -24.82 7.67 14.31 0.11 -24.71 16 6 C -0.19 -6.86 5.46 -20.01 -0.11 -6.96 16 7 C -0.07 -1.86 7.37 22.52 0.17 -1.69 16 8 C -0.16 -3.14 10.02 22.23 0.22 -2.92 16 9 C -0.06 -1.15 10.03 22.30 0.22 -0.93 16 10 C -0.23 -5.96 9.03 22.34 0.20 -5.76 16 11 C 0.14 5.24 6.67 22.84 0.15 5.39 16 12 O -0.32 -14.15 9.00 -71.35 -0.64 -14.79 16 13 C 0.02 0.73 9.81 113.37 1.11 1.85 16 14 C 0.15 5.27 3.39 46.38 0.16 5.43 16 15 H 0.13 3.29 8.01 -2.39 -0.02 3.27 16 16 C -0.14 -5.64 6.52 31.78 0.21 -5.44 16 17 C 0.21 11.47 4.21 86.73 0.37 11.84 16 18 N -0.58 -32.73 1.74 -691.99 -1.21 -33.93 16 19 C -0.18 -11.42 8.79 84.03 0.74 -10.68 16 20 H 0.05 3.43 7.83 -2.91 -0.02 3.41 16 21 C -0.07 -4.24 5.48 84.86 0.47 -3.78 16 22 N -0.95 -64.26 10.31 21.65 0.22 -64.03 16 23 Si 0.96 52.02 29.55 68.60 2.03 54.04 16 24 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 25 H -0.30 -16.32 7.11 99.48 0.71 -15.62 16 26 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 27 C 0.12 5.58 6.22 86.86 0.54 6.12 16 28 H 0.05 0.95 6.92 -2.39 -0.02 0.93 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.07 7.92 -2.39 -0.02 1.05 16 31 H 0.10 2.15 4.03 -2.39 -0.01 2.14 16 32 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.17 3.46 3.35 -2.91 -0.01 3.45 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.15 3.15 6.30 -2.91 -0.02 3.13 16 37 H 0.08 1.92 7.65 -2.39 -0.02 1.90 16 38 H 0.06 1.79 7.67 -2.38 -0.02 1.77 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.01 0.84 5.75 -2.39 -0.01 0.83 16 43 H -0.02 -1.17 7.50 -2.39 -0.02 -1.19 16 44 H 0.23 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -89.73 351.16 5.58 -84.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.98 Total: 7.58 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.18 Total: 14.36 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.07 Total: -120.62 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.53 Total: -39.51 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.03 Total: 54.04 kcal Total: -89.73 5.58 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034021157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.912 kcal (2) G-P(sol) polarization free energy of solvation -89.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds