Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47086 * 2 1 4 4 C 1.34778 * 119.99956 * 257.74433 * 3 2 1 5 5 O 1.21551 * 119.99803 * 182.56873 * 4 3 2 6 6 C 1.47853 * 119.99919 * 2.56571 * 4 3 2 7 7 C 1.39606 * 120.11533 * 219.51181 * 6 4 3 8 8 C 1.37967 * 119.96290 * 180.02562 * 7 6 4 9 9 C 1.38282 * 120.20897 * 0.02562 * 8 7 6 10 10 C 1.38813 * 120.23895 * 359.97438 * 9 8 7 11 11 O 1.35904 * 119.98541 * 179.97438 * 10 9 8 12 12 C 1.42907 * 117.00128 * 0.02562 * 11 10 9 13 13 C 1.38496 * 120.02704 * 359.72467 * 10 9 8 14 14 C 1.46500 * 119.99954 * 77.73805 * 3 2 1 15 15 H 1.09008 * 110.88423 * 2.43006 * 14 3 2 16 16 C 1.55158 * 111.00312 * 126.34872 * 14 3 2 17 17 C 1.54327 * 102.94320 * 153.57811 * 16 14 3 18 18 N 1.47026 * 107.26912 * 337.81291 * 17 16 14 19 19 C 1.36934 * 125.64509 * 178.90703 * 18 17 16 20 20 H 1.07999 * 119.99966 * 174.72149 * 19 18 17 21 21 C 1.38810 * 120.00086 * 354.71446 * 19 18 17 22 22 N 1.31614 * 120.00195 * 8.83834 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 188.82854 * 21 19 18 24 24 H 1.48501 * 109.46828 * 94.95992 * 23 21 19 25 25 H 1.48495 * 109.47014 * 214.96279 * 23 21 19 26 26 H 1.48502 * 109.47105 * 334.96343 * 23 21 19 27 27 C 1.47423 * 108.70201 * 358.93704 * 18 17 16 28 28 H 1.08999 * 109.47479 * 280.84442 * 1 2 3 29 29 H 1.08998 * 109.47610 * 40.84238 * 1 2 3 30 30 H 1.09001 * 109.47333 * 160.84474 * 1 2 3 31 31 H 1.08995 * 109.47072 * 240.00161 * 2 1 3 32 32 H 1.08997 * 109.47430 * 120.00003 * 2 1 3 33 33 H 1.07997 * 120.01835 * 0.03078 * 7 6 4 34 34 H 1.08001 * 119.89303 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.88100 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46758 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.46360 * 299.99633 * 12 11 10 38 38 H 1.08998 * 109.46984 * 59.99761 * 12 11 10 39 39 H 1.08001 * 120.09964 * 180.29760 * 13 10 9 40 40 H 1.09003 * 110.71717 * 35.21735 * 16 14 3 41 41 H 1.08998 * 110.72426 * 271.94763 * 16 14 3 42 42 H 1.08998 * 109.88421 * 218.39490 * 17 16 14 43 43 H 1.08998 * 109.87639 * 97.22495 * 17 16 14 44 44 H 0.97001 * 120.00368 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.36716 * 142.97125 * 27 18 17 46 46 H 1.09004 * 110.37005 * 265.17628 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4765 1.9340 -1.1406 5 8 2.9250 3.0638 -1.1311 6 6 2.4338 1.1662 -2.4034 7 6 3.4955 1.2436 -3.3066 8 6 3.4521 0.5262 -4.4842 9 6 2.3593 -0.2700 -4.7741 10 6 1.2989 -0.3533 -3.8821 11 8 0.2271 -1.1369 -4.1724 12 6 0.2593 -1.8469 -5.4122 13 6 1.3349 0.3578 -2.6942 14 6 2.0084 2.1617 1.2398 15 1 1.6500 1.5598 2.0750 16 6 3.4133 2.7485 1.5387 17 6 3.0924 4.0025 2.3791 18 7 1.7049 4.3855 2.0794 19 6 1.0291 5.4376 2.6375 20 1 0.0385 5.6892 2.2887 21 6 1.6173 6.1806 3.6518 22 7 2.8829 5.9896 3.9585 23 14 0.6126 7.4519 4.5813 24 1 0.0713 6.8435 5.8231 25 1 1.4780 8.6065 4.9322 26 1 -0.5102 7.9162 3.7275 27 6 1.1615 3.4487 1.0791 28 1 -0.3634 0.1933 1.0093 29 1 -0.3634 0.7774 -0.6720 30 1 -0.3634 -0.9708 -0.3372 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.3504 1.8647 -3.0835 34 1 4.2743 0.5866 -5.1819 35 1 2.3307 -0.8290 -5.6977 36 1 -0.6540 -2.4319 -5.5196 37 1 0.3345 -1.1367 -6.2357 38 1 1.1219 -2.5131 -5.4271 39 1 0.5127 0.2901 -1.9973 40 1 3.9211 3.0234 0.6142 41 1 4.0121 2.0420 2.1134 42 1 3.7678 4.8137 2.1073 43 1 3.1928 3.7734 3.4400 44 1 3.2940 6.5091 4.6670 45 1 0.1117 3.2402 1.2855 46 1 1.2760 3.8573 0.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034024048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = 7.013868 kcal Electronic energy + Delta-G solvation = -27418.982470 eV Core-core repulsion = 23696.940983 eV Total energy + Delta-G solvation = -3722.041487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.83276 -39.71416 -37.55964 -36.50650 -35.63044 -32.52948 -31.25859 -30.59541 -30.19513 -28.85191 -27.68873 -27.05519 -24.59998 -23.72865 -23.03782 -22.50754 -20.95381 -19.97410 -19.27304 -17.80379 -16.98080 -16.60866 -16.46848 -16.25366 -16.06119 -15.50691 -14.88294 -14.57540 -14.40479 -14.31334 -13.84894 -13.61813 -13.29541 -13.12759 -12.83692 -12.65614 -12.50985 -12.20133 -12.01274 -11.97434 -11.74760 -11.64684 -11.42833 -11.23194 -11.02091 -10.85700 -10.77216 -10.59859 -10.28867 -10.00317 -9.85133 -9.60352 -9.22731 -8.99304 -8.51031 -8.45113 -8.28220 -6.67836 -5.61405 -2.92214 0.76972 1.19898 2.81042 2.98225 3.14995 3.47171 3.51970 3.54469 3.64807 4.41697 4.49139 4.60635 4.73863 4.76248 4.78810 4.88001 5.06954 5.08736 5.13789 5.19881 5.27868 5.36447 5.52139 5.54158 5.59602 5.71061 5.72142 5.78946 5.88762 5.94724 5.97665 6.11051 6.17220 6.25621 6.33505 6.40460 6.58675 6.67802 6.74354 6.83811 7.07872 7.25480 7.63146 7.69862 7.80084 7.95179 8.36823 8.42479 9.33076 9.93913 10.61753 11.50851 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.003039 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.595797 B = 9210.418265 C = 9559.785144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.552 3.448 5 O -0.506 6.506 6 C -0.082 4.082 7 C -0.104 4.104 8 C -0.087 4.087 9 C -0.193 4.193 10 C 0.117 3.883 11 O -0.316 6.316 12 C 0.027 3.973 13 C -0.137 4.137 14 C 0.132 3.868 15 H 0.093 0.907 16 C -0.159 4.159 17 C 0.184 3.816 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.131 3.869 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.033 0.967 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -20.525 -17.668 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.339 3.661 5 O -0.382 6.382 6 C -0.086 4.086 7 C -0.123 4.123 8 C -0.105 4.105 9 C -0.212 4.212 10 C 0.072 3.928 11 O -0.229 6.229 12 C -0.068 4.068 13 C -0.155 4.155 14 C 0.029 3.971 15 H 0.111 0.889 16 C -0.198 4.198 17 C 0.059 3.941 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.170 0.830 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.756 -19.779 -17.367 26.380 hybrid contribution -0.410 0.510 0.229 0.693 sum -2.166 -19.268 -17.139 25.878 Atomic orbital electron populations 1.22354 0.95809 1.02243 1.03163 1.21867 0.94639 0.82886 1.03544 1.47915 1.62349 1.13498 1.09019 1.18247 0.78553 0.86289 0.82997 1.90845 1.44221 1.17877 1.85241 1.19887 0.95351 0.97452 0.95876 1.21162 0.98563 0.99296 0.93315 1.20894 0.97578 0.95486 0.96550 1.21382 0.95256 1.03973 1.00564 1.18855 0.87067 0.92675 0.94180 1.86086 1.39289 1.58068 1.39505 1.23062 1.03467 0.95753 0.84498 1.21200 1.00309 0.97439 0.96568 1.22411 0.98447 0.92552 0.83715 0.88942 1.23326 0.95468 0.99209 1.01804 1.21059 0.85914 0.91222 0.95866 1.44341 1.10455 1.31092 1.46950 1.19050 0.98403 1.05132 1.12662 0.90541 1.24804 0.96283 0.99997 0.99404 1.69999 1.10013 1.43667 1.33015 0.86131 0.79091 0.80667 0.80144 1.21719 1.21854 1.20688 1.21789 0.94750 0.88767 0.94327 0.91577 0.91610 0.91374 0.89424 0.90546 0.84809 0.85167 0.85306 0.88184 0.92643 0.92638 0.83012 0.89841 0.92797 0.94009 0.93852 0.93865 0.94848 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.71 37.16 0.32 -1.48 16 2 C 0.09 1.05 5.53 -4.04 -0.02 1.03 16 3 N -0.60 -9.23 2.58 -164.77 -0.42 -9.65 16 4 C 0.55 9.36 6.61 -12.32 -0.08 9.28 16 5 O -0.51 -10.76 12.96 5.32 0.07 -10.69 16 6 C -0.08 -1.13 5.12 -104.99 -0.54 -1.66 16 7 C -0.10 -1.27 9.63 -39.17 -0.38 -1.65 16 8 C -0.09 -0.83 10.03 -39.66 -0.40 -1.22 16 9 C -0.19 -1.73 9.03 -39.35 -0.36 -2.09 16 10 C 0.12 1.23 6.68 -39.27 -0.26 0.97 16 11 O -0.32 -3.00 10.49 -19.44 -0.20 -3.21 16 12 C 0.03 0.15 9.81 101.05 0.99 1.14 16 13 C -0.14 -1.62 7.37 -39.02 -0.29 -1.91 16 14 C 0.13 2.48 3.49 -65.79 -0.23 2.25 16 15 H 0.09 1.61 7.99 -51.92 -0.41 1.20 16 16 C -0.16 -3.35 6.28 -24.89 -0.16 -3.50 16 17 C 0.18 4.84 5.38 -3.06 -0.02 4.83 16 18 N -0.60 -16.53 3.39 -170.07 -0.58 -17.11 16 19 C -0.22 -6.61 10.26 -15.06 -0.15 -6.76 16 20 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 21 C -0.01 -0.26 5.47 -17.43 -0.10 -0.35 16 22 N -0.92 -28.21 10.38 55.49 0.58 -27.64 16 23 Si 0.91 22.94 29.56 -169.99 -5.03 17.91 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.13 2.99 6.62 -2.53 -0.02 2.98 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.75 6.75 -51.93 -0.35 0.40 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.90 5.10 -51.93 -0.26 0.63 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 38 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 39 H 0.15 1.72 3.56 -52.49 -0.19 1.54 16 40 H 0.08 1.86 5.61 -51.93 -0.29 1.56 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.04 1.23 7.58 -51.93 -0.39 0.84 16 43 H 0.04 1.22 7.34 -51.93 -0.38 0.84 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.88 6.17 -51.93 -0.32 0.56 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -35.14 359.54 -8.50 -43.64 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.66 Total: -0.52 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.68 Total: 1.85 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.43 Total: -54.40 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.14 Total: -13.90 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.14 -8.50 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034024048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.657 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds