Wall clock time and date at job start Tue Mar 31 2020 13:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47086 * 2 1 4 4 C 1.34778 * 119.99956 * 257.74433 * 3 2 1 5 5 O 1.21551 * 119.99803 * 182.56873 * 4 3 2 6 6 C 1.47853 * 119.99919 * 2.56571 * 4 3 2 7 7 C 1.39606 * 120.11533 * 219.51181 * 6 4 3 8 8 C 1.37967 * 119.96290 * 180.02562 * 7 6 4 9 9 C 1.38282 * 120.20897 * 0.02562 * 8 7 6 10 10 C 1.38813 * 120.23895 * 359.97438 * 9 8 7 11 11 O 1.35904 * 119.98541 * 179.97438 * 10 9 8 12 12 C 1.42907 * 117.00128 * 0.02562 * 11 10 9 13 13 C 1.38496 * 120.02704 * 359.72467 * 10 9 8 14 14 C 1.46500 * 119.99954 * 77.73805 * 3 2 1 15 15 H 1.09008 * 110.88423 * 2.43006 * 14 3 2 16 16 C 1.55158 * 111.00312 * 126.34872 * 14 3 2 17 17 C 1.54327 * 102.94320 * 153.57811 * 16 14 3 18 18 N 1.47026 * 107.26912 * 337.81291 * 17 16 14 19 19 C 1.36934 * 125.64509 * 178.90703 * 18 17 16 20 20 H 1.07999 * 119.99966 * 174.72149 * 19 18 17 21 21 C 1.38810 * 120.00086 * 354.71446 * 19 18 17 22 22 N 1.31614 * 120.00195 * 8.83834 * 21 19 18 23 23 Si 1.86803 * 120.00009 * 188.82854 * 21 19 18 24 24 H 1.48501 * 109.46828 * 94.95992 * 23 21 19 25 25 H 1.48495 * 109.47014 * 214.96279 * 23 21 19 26 26 H 1.48502 * 109.47105 * 334.96343 * 23 21 19 27 27 C 1.47423 * 108.70201 * 358.93704 * 18 17 16 28 28 H 1.08999 * 109.47479 * 280.84442 * 1 2 3 29 29 H 1.08998 * 109.47610 * 40.84238 * 1 2 3 30 30 H 1.09001 * 109.47333 * 160.84474 * 1 2 3 31 31 H 1.08995 * 109.47072 * 240.00161 * 2 1 3 32 32 H 1.08997 * 109.47430 * 120.00003 * 2 1 3 33 33 H 1.07997 * 120.01835 * 0.03078 * 7 6 4 34 34 H 1.08001 * 119.89303 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.88100 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46758 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.46360 * 299.99633 * 12 11 10 38 38 H 1.08998 * 109.46984 * 59.99761 * 12 11 10 39 39 H 1.08001 * 120.09964 * 180.29760 * 13 10 9 40 40 H 1.09003 * 110.71717 * 35.21735 * 16 14 3 41 41 H 1.08998 * 110.72426 * 271.94763 * 16 14 3 42 42 H 1.08998 * 109.88421 * 218.39490 * 17 16 14 43 43 H 1.08998 * 109.87639 * 97.22495 * 17 16 14 44 44 H 0.97001 * 120.00368 * 179.97438 * 22 21 19 45 45 H 1.09001 * 110.36716 * 142.97125 * 27 18 17 46 46 H 1.09004 * 110.37005 * 265.17628 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4765 1.9340 -1.1406 5 8 2.9250 3.0638 -1.1311 6 6 2.4338 1.1662 -2.4034 7 6 3.4955 1.2436 -3.3066 8 6 3.4521 0.5262 -4.4842 9 6 2.3593 -0.2700 -4.7741 10 6 1.2989 -0.3533 -3.8821 11 8 0.2271 -1.1369 -4.1724 12 6 0.2593 -1.8469 -5.4122 13 6 1.3349 0.3578 -2.6942 14 6 2.0084 2.1617 1.2398 15 1 1.6500 1.5598 2.0750 16 6 3.4133 2.7485 1.5387 17 6 3.0924 4.0025 2.3791 18 7 1.7049 4.3855 2.0794 19 6 1.0291 5.4376 2.6375 20 1 0.0385 5.6892 2.2887 21 6 1.6173 6.1806 3.6518 22 7 2.8829 5.9896 3.9585 23 14 0.6126 7.4519 4.5813 24 1 0.0713 6.8435 5.8231 25 1 1.4780 8.6065 4.9322 26 1 -0.5102 7.9162 3.7275 27 6 1.1615 3.4487 1.0791 28 1 -0.3634 0.1933 1.0093 29 1 -0.3634 0.7774 -0.6720 30 1 -0.3634 -0.9708 -0.3372 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.3504 1.8647 -3.0835 34 1 4.2743 0.5866 -5.1819 35 1 2.3307 -0.8290 -5.6977 36 1 -0.6540 -2.4319 -5.5196 37 1 0.3345 -1.1367 -6.2357 38 1 1.1219 -2.5131 -5.4271 39 1 0.5127 0.2901 -1.9973 40 1 3.9211 3.0234 0.6142 41 1 4.0121 2.0420 2.1134 42 1 3.7678 4.8137 2.1073 43 1 3.1928 3.7734 3.4400 44 1 3.2940 6.5091 4.6670 45 1 0.1117 3.2402 1.2855 46 1 1.2760 3.8573 0.0751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034024048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:12 Heat of formation + Delta-G solvation = -15.550635 kcal Electronic energy + Delta-G solvation = -27419.960941 eV Core-core repulsion = 23696.940983 eV Total energy + Delta-G solvation = -3723.019957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90997 -40.70186 -38.80805 -37.84900 -36.96765 -34.43623 -32.43766 -31.62372 -31.25586 -30.61875 -28.93481 -28.09228 -26.54122 -24.89177 -23.92635 -23.48270 -22.31310 -22.04917 -20.38308 -19.08037 -18.64705 -17.75807 -17.52110 -17.10381 -16.88840 -16.68174 -16.53484 -16.00172 -15.94610 -15.42446 -15.31800 -14.63194 -14.55207 -14.21152 -14.17874 -14.01933 -13.65710 -13.58502 -13.40772 -13.16045 -12.95203 -12.77726 -12.74523 -12.66250 -12.26563 -12.18157 -12.08386 -12.01886 -11.99002 -11.86010 -11.76064 -11.57734 -10.71644 -10.60020 -9.97310 -9.70306 -9.24565 -8.89736 -7.87230 -5.22433 -0.12392 0.38680 1.43891 1.47169 1.56246 1.69719 1.87132 2.34016 2.49694 2.74626 3.29252 3.42171 3.69668 3.78760 3.88570 3.98279 4.02728 4.11054 4.20902 4.23383 4.27347 4.36570 4.46822 4.47617 4.48934 4.51119 4.62586 4.72247 4.79173 4.83694 4.86996 4.92358 4.97241 5.04101 5.10477 5.18811 5.29523 5.37321 5.41848 5.43810 5.61039 5.63179 5.66779 5.74566 6.16991 6.40424 6.41705 7.07048 7.13600 7.74043 8.40999 9.24121 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.003039 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.595797 B = 9210.418265 C = 9559.785144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 N -0.590 5.590 4 C 0.548 3.452 5 O -0.563 6.563 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.079 4.079 9 C -0.181 4.181 10 C 0.117 3.883 11 O -0.330 6.330 12 C 0.016 3.984 13 C -0.143 4.143 14 C 0.152 3.848 15 H 0.117 0.883 16 C -0.146 4.146 17 C 0.195 3.805 18 N -0.622 5.622 19 C -0.247 4.247 20 H 0.080 0.920 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.130 3.870 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.082 0.918 42 H -0.006 1.006 43 H 0.020 0.980 44 H 0.248 0.752 45 H 0.043 0.957 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -23.492 -19.341 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.338 3.662 5 O -0.443 6.443 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.097 4.097 9 C -0.199 4.199 10 C 0.071 3.929 11 O -0.244 6.244 12 C -0.078 4.078 13 C -0.162 4.162 14 C 0.048 3.952 15 H 0.134 0.866 16 C -0.184 4.184 17 C 0.070 3.930 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.811 3.189 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.004 3.996 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.171 0.829 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.012 0.988 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -3.143 -22.817 -19.071 29.903 hybrid contribution -0.019 1.365 0.585 1.485 sum -3.162 -21.452 -18.485 28.494 Atomic orbital electron populations 1.22318 0.94758 1.03290 1.02723 1.22185 0.95430 0.80289 1.05224 1.47936 1.61941 1.14818 1.07438 1.18864 0.77250 0.85819 0.84316 1.90811 1.46809 1.20391 1.86247 1.19606 0.97122 0.98908 0.94837 1.21238 0.98128 1.00211 0.94468 1.21202 0.98631 0.94214 0.95640 1.21770 0.93991 1.02985 1.01194 1.18912 0.87783 0.92379 0.93795 1.86075 1.38823 1.58000 1.41474 1.23402 1.05251 0.96089 0.83094 1.21159 0.99689 0.97627 0.97684 1.22053 0.95586 0.91603 0.85982 0.86562 1.23121 0.97307 0.97504 1.00512 1.20774 0.84898 0.91994 0.95331 1.44660 1.11062 1.31655 1.47514 1.19448 0.98755 1.06195 1.13189 0.90255 1.25737 0.97374 1.02452 1.00292 1.70229 1.11607 1.44759 1.33288 0.84992 0.77570 0.77642 0.78706 1.20710 1.22072 1.19382 1.21842 0.95936 0.89898 0.91910 0.91862 0.93139 0.88596 0.88039 0.88575 0.86013 0.82151 0.81888 0.86414 0.91661 0.91060 0.82850 0.91238 0.89937 0.98755 0.96138 0.94252 0.93828 0.97003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.71 71.98 0.63 -2.51 16 2 C 0.09 1.83 5.53 86.38 0.48 2.31 16 3 N -0.59 -18.12 2.58 -793.50 -2.05 -20.17 16 4 C 0.55 19.13 6.61 86.79 0.57 19.70 16 5 O -0.56 -25.44 12.96 -3.88 -0.05 -25.49 16 6 C -0.10 -2.76 5.12 -20.10 -0.10 -2.87 16 7 C -0.12 -2.91 9.63 22.54 0.22 -2.69 16 8 C -0.08 -1.29 10.03 22.22 0.22 -1.07 16 9 C -0.18 -2.60 9.03 22.42 0.20 -2.39 16 10 C 0.12 2.14 6.68 22.47 0.15 2.29 16 11 O -0.33 -5.22 10.49 -92.47 -0.97 -6.19 16 12 C 0.02 0.11 9.81 113.37 1.11 1.22 16 13 C -0.14 -3.20 7.37 22.63 0.17 -3.04 16 14 C 0.15 5.73 3.49 46.38 0.16 5.89 16 15 H 0.12 3.87 7.99 -2.38 -0.02 3.85 16 16 C -0.15 -6.30 6.28 31.78 0.20 -6.10 16 17 C 0.20 10.84 5.38 86.73 0.47 11.30 16 18 N -0.62 -35.63 3.39 -691.99 -2.35 -37.98 16 19 C -0.25 -15.03 10.26 84.03 0.86 -14.16 16 20 H 0.08 4.63 7.84 -2.91 -0.02 4.61 16 21 C -0.07 -3.97 5.47 84.86 0.46 -3.50 16 22 N -0.95 -60.67 10.38 21.65 0.22 -60.45 16 23 Si 0.98 48.10 29.56 68.60 2.03 50.13 16 24 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.13 6.16 6.62 86.85 0.58 6.74 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.09 6.75 -2.39 -0.02 1.07 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.86 5.10 -2.39 -0.01 1.84 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 3.12 8.05 -2.91 -0.02 3.10 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.16 1.20 6.28 -2.91 -0.02 1.18 16 36 H 0.12 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.34 7.66 -2.39 -0.02 0.32 16 38 H 0.07 0.28 7.66 -2.39 -0.02 0.27 16 39 H 0.15 3.28 3.56 -2.91 -0.01 3.27 16 40 H 0.07 3.25 5.61 -2.39 -0.01 3.24 16 41 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 42 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 43 H 0.02 1.21 7.34 -2.39 -0.02 1.19 16 44 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.01 0.63 6.17 -2.38 -0.01 0.62 16 Total: -1.00 -81.71 359.54 4.20 -77.51 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.99 Total: 11.53 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.38 Total: 11.11 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.17 Total: -118.59 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.02 Total: -31.68 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.71 4.20 -77.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034024048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.957 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds