Wall clock time and date at job start Tue Mar 31 2020 13:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47446 * 2 1 4 4 C 1.34770 * 120.00383 * 251.22472 * 3 2 1 5 5 O 1.21589 * 120.00232 * 185.94442 * 4 3 2 6 6 C 1.47604 * 120.00002 * 5.94093 * 4 3 2 7 7 C 1.39734 * 120.08342 * 26.11134 * 6 4 3 8 8 C 1.37711 * 119.90466 * 179.74502 * 7 6 4 9 9 C 1.38989 * 120.09043 * 0.52569 * 8 7 6 10 10 O 1.35707 * 119.91449 * 179.76477 * 9 8 7 11 11 C 1.42903 * 116.99936 * 359.97438 * 10 9 8 12 12 C 1.38996 * 120.17809 * 359.74611 * 9 8 7 13 13 C 1.37708 * 120.08797 * 359.97438 * 12 9 8 14 14 C 1.46501 * 119.99597 * 71.22051 * 3 2 1 15 15 H 1.08998 * 110.78221 * 14.00538 * 14 3 2 16 16 C 1.55152 * 110.72313 * 250.76187 * 14 3 2 17 17 C 1.54918 * 101.61666 * 277.12320 * 16 14 3 18 18 N 1.47473 * 104.80691 * 323.03989 * 17 16 14 19 19 C 1.36938 * 125.62524 * 204.05198 * 18 17 16 20 20 H 1.08000 * 119.99641 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00056 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00095 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99809 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47376 * 89.99752 * 23 21 19 25 25 H 1.48496 * 109.47157 * 210.00026 * 23 21 19 26 26 H 1.48500 * 109.47115 * 329.99886 * 23 21 19 27 27 C 1.47015 * 108.72465 * 24.07194 * 18 17 16 28 28 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47572 * 300.00061 * 1 2 3 30 30 H 1.09009 * 109.46931 * 59.99665 * 1 2 3 31 31 H 1.09000 * 109.47572 * 239.99939 * 2 1 3 32 32 H 1.09003 * 109.47581 * 120.00371 * 2 1 3 33 33 H 1.07995 * 120.05108 * 0.02562 * 7 6 4 34 34 H 1.07997 * 119.95039 * 180.27476 * 8 7 6 35 35 H 1.08995 * 109.47134 * 300.00037 * 11 10 9 36 36 H 1.09002 * 109.46822 * 59.99525 * 11 10 9 37 37 H 1.09000 * 109.47553 * 180.02562 * 11 10 9 38 38 H 1.07998 * 119.95777 * 179.97438 * 12 9 8 39 39 H 1.08000 * 120.04663 * 180.02562 * 13 12 9 40 40 H 1.09002 * 111.00383 * 35.21162 * 16 14 3 41 41 H 1.09001 * 111.01009 * 159.02941 * 16 14 3 42 42 H 1.08994 * 110.36951 * 81.84352 * 17 16 14 43 43 H 1.08998 * 110.36474 * 204.17075 * 17 16 14 44 44 H 0.96995 * 120.00286 * 179.97438 * 22 21 19 45 45 H 1.09008 * 109.88451 * 239.55866 * 27 18 17 46 46 H 1.08993 * 109.88274 * 118.39093 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5972 1.8913 -1.1050 5 8 3.0991 2.9983 -1.0725 6 6 2.6219 1.1062 -2.3546 7 6 1.6408 0.1406 -2.5947 8 6 1.6643 -0.5861 -3.7642 9 6 2.6684 -0.3679 -4.7001 10 8 2.6909 -1.0894 -5.8493 11 6 1.6529 -2.0549 -6.0295 12 6 3.6494 0.5877 -4.4625 13 6 3.6296 1.3226 -3.2981 14 6 1.8774 2.2079 1.2012 15 1 1.6248 1.5940 2.0658 16 6 0.8123 3.3149 0.9840 17 6 1.6376 4.4027 0.2522 18 7 2.9706 4.3510 0.8810 19 6 3.8762 5.3776 0.9164 20 1 4.8302 5.2394 1.4033 21 6 3.5678 6.5958 0.3266 22 7 2.4048 6.7643 -0.2663 23 14 4.8033 7.9959 0.3744 24 1 5.6820 7.9218 -0.8205 25 1 4.0812 9.2935 0.3781 26 1 5.6292 7.8856 1.6036 27 6 3.1665 3.0151 1.4628 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8625 -0.0323 -1.8662 34 1 0.9038 -1.3295 -3.9525 35 1 1.6937 -2.7871 -5.2231 36 1 0.6848 -1.5542 -6.0169 37 1 1.7887 -2.5603 -6.9857 38 1 4.4282 0.7540 -5.1920 39 1 4.3920 2.0653 -3.1143 40 1 -0.0030 2.9549 0.3564 41 1 0.4345 3.6861 1.9367 42 1 1.7107 4.1725 -0.8106 43 1 1.1862 5.3839 0.3986 44 1 2.1892 7.6156 -0.6781 45 1 3.3396 3.0998 2.5357 46 1 4.0146 2.5239 0.9860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034024159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:25 Heat of formation + Delta-G solvation = 22.465248 kcal Electronic energy + Delta-G solvation = -28089.608897 eV Core-core repulsion = 24368.237432 eV Total energy + Delta-G solvation = -3721.371465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90437 -40.78364 -38.69653 -37.52739 -36.84055 -34.27327 -32.32788 -31.39607 -31.31568 -30.59486 -28.86726 -28.11273 -26.42116 -24.68063 -23.76339 -23.59284 -22.14498 -21.90277 -19.94474 -19.14315 -18.80093 -18.07323 -17.52144 -17.02812 -16.67087 -16.49042 -16.21246 -16.08794 -15.82817 -15.55394 -15.05099 -14.48514 -14.43806 -14.13846 -13.99998 -13.69574 -13.55101 -13.44473 -13.24566 -13.22667 -12.85194 -12.79730 -12.76295 -12.57375 -12.25442 -12.12348 -11.99128 -11.93283 -11.75024 -11.66373 -11.44124 -11.24457 -10.71151 -10.30676 -10.02430 -9.39535 -9.18703 -8.61139 -7.63342 -5.01230 -0.01089 0.29094 1.41485 1.45951 1.53403 2.00833 2.13222 2.30946 2.55639 2.82353 3.42688 3.64105 3.73763 3.87408 3.89350 3.98118 4.06616 4.22222 4.25309 4.32212 4.35893 4.41533 4.45519 4.47180 4.56729 4.63384 4.75702 4.77940 4.84312 4.95224 4.97384 5.00855 5.05842 5.08795 5.12362 5.22041 5.22680 5.39889 5.48180 5.50616 5.62343 5.88944 5.91146 6.01991 6.37578 6.45321 6.64487 7.25183 7.55491 7.97601 8.62557 9.38120 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.004092 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.520748 B = 6841.125314 C = 8081.270461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 N -0.600 5.600 4 C 0.517 3.483 5 O -0.516 6.516 6 C -0.182 4.182 7 C -0.065 4.065 8 C -0.208 4.208 9 C 0.146 3.854 10 O -0.330 6.330 11 C 0.013 3.987 12 C -0.169 4.169 13 C -0.044 4.044 14 C 0.152 3.848 15 H 0.131 0.869 16 C -0.142 4.142 17 C 0.164 3.836 18 N -0.594 5.594 19 C -0.216 4.216 20 H 0.067 0.933 21 C -0.075 4.075 22 N -0.948 5.948 23 Si 0.974 3.026 24 H -0.296 1.296 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.135 3.865 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.000 1.000 43 H 0.051 0.949 44 H 0.238 0.762 45 H 0.028 0.972 46 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 -25.462 -5.775 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.045 4.045 3 N -0.335 5.335 4 C 0.306 3.694 5 O -0.391 6.391 6 C -0.185 4.185 7 C -0.083 4.083 8 C -0.226 4.226 9 C 0.099 3.901 10 O -0.243 6.243 11 C -0.081 4.081 12 C -0.187 4.187 13 C -0.064 4.064 14 C 0.048 3.952 15 H 0.149 0.851 16 C -0.182 4.182 17 C 0.039 3.961 18 N -0.318 5.318 19 C -0.346 4.346 20 H 0.085 0.915 21 C -0.267 4.267 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.224 1.224 25 H -0.218 1.218 26 H -0.193 1.193 27 C 0.009 3.991 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.017 0.983 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.046 0.954 46 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -7.236 -24.691 -5.954 26.409 hybrid contribution 0.922 1.397 -0.251 1.693 sum -6.314 -23.293 -6.205 24.919 Atomic orbital electron populations 1.22305 0.94203 1.04169 1.02566 1.22521 0.95785 0.80924 1.05303 1.47820 1.60102 1.14148 1.11391 1.18866 0.79976 0.86157 0.84418 1.91189 1.43439 1.20110 1.84388 1.19979 1.00531 1.01737 0.96252 1.22238 0.97319 0.91410 0.97310 1.21534 1.01105 1.05382 0.94610 1.19336 0.93907 0.90824 0.86006 1.86032 1.51944 1.50548 1.35798 1.23463 0.89553 0.90352 1.04696 1.20421 1.01284 0.98452 0.98587 1.20976 0.96812 0.96291 0.92277 1.21933 0.94069 0.91568 0.87635 0.85101 1.23338 0.97298 0.96599 1.00950 1.21724 0.84237 0.96628 0.93482 1.44384 1.15584 1.08143 1.63735 1.19332 0.96297 0.90644 1.28354 0.91508 1.25497 0.99413 1.00335 1.01423 1.70138 1.22764 1.23421 1.43665 0.85124 0.78077 0.78910 0.77575 1.22443 1.21757 1.19346 1.21541 0.95998 0.86664 0.94928 0.88072 0.91686 0.92733 0.87512 0.89092 0.80506 0.81152 0.90760 0.91346 0.86268 0.84102 0.87088 0.90563 0.90629 0.98287 0.93135 0.95192 0.95389 0.98173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.12 71.98 0.66 -1.76 16 2 C 0.08 1.41 5.56 86.38 0.48 1.89 16 3 N -0.60 -18.73 2.57 -794.90 -2.04 -20.77 16 4 C 0.52 20.60 6.53 86.72 0.57 21.17 16 5 O -0.52 -27.57 10.10 -4.00 -0.04 -27.62 16 6 C -0.18 -5.88 5.51 -20.08 -0.11 -6.00 16 7 C -0.07 -1.46 7.42 22.51 0.17 -1.30 16 8 C -0.21 -3.81 9.01 22.33 0.20 -3.61 16 9 C 0.15 3.26 6.69 22.63 0.15 3.41 16 10 O -0.33 -6.30 10.48 -90.28 -0.95 -7.24 16 11 C 0.01 0.12 9.81 113.37 1.11 1.23 16 12 C -0.17 -4.57 9.97 22.33 0.22 -4.35 16 13 C -0.04 -1.48 9.58 22.51 0.22 -1.26 16 14 C 0.15 5.23 3.37 46.18 0.16 5.39 16 15 H 0.13 3.30 8.02 -2.39 -0.02 3.28 16 16 C -0.14 -5.59 6.69 31.99 0.21 -5.38 16 17 C 0.16 9.06 4.92 86.85 0.43 9.49 16 18 N -0.59 -34.20 2.23 -691.85 -1.54 -35.74 16 19 C -0.22 -13.64 10.27 84.03 0.86 -12.78 16 20 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.76 5.49 84.86 0.47 -4.30 16 22 N -0.95 -62.84 10.09 21.65 0.22 -62.62 16 23 Si 0.97 50.88 29.55 68.60 2.03 52.91 16 24 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 25 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 26 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 27 C 0.14 6.23 5.99 86.73 0.52 6.75 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.98 7.97 -2.39 -0.02 0.96 16 30 H 0.05 0.88 6.82 -2.38 -0.02 0.86 16 31 H 0.11 1.85 4.17 -2.39 -0.01 1.84 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.18 3.08 2.75 -2.91 -0.01 3.07 16 34 H 0.17 1.70 6.28 -2.91 -0.02 1.69 16 35 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 36 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 37 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.11 4.22 7.86 -2.91 -0.02 4.20 16 40 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.00 -0.03 5.51 -2.39 -0.01 -0.04 16 43 H 0.05 3.19 5.88 -2.39 -0.01 3.18 16 44 H 0.24 15.36 8.31 -92.71 -0.77 14.58 16 45 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.00 0.02 7.16 -2.39 -0.02 0.00 16 Total: -1.00 -87.80 353.04 4.97 -82.82 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.99 Total: 9.65 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.31 Total: 8.60 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -3.37 Total: -119.13 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.99 Total: -34.86 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.03 Total: 52.91 kcal Total: -87.80 4.97 -82.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034024159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.287 kcal (2) G-P(sol) polarization free energy of solvation -87.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds