Wall clock time and date at job start Tue Mar 31 2020 13:47:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.42898 * 109.47005 * 2 1
4 4 C 1.35720 * 117.00017 * 179.97438 * 3 2 1
5 5 C 1.39019 * 119.90819 * 0.02562 * 4 3 2
6 6 C 1.37687 * 120.08530 * 180.02562 * 5 4 3
7 7 C 1.39751 * 119.90913 * 0.02562 * 6 5 4
8 8 C 1.47601 * 120.08464 * 180.02562 * 7 6 5
9 9 O 1.21584 * 120.00156 * 215.05306 * 8 7 6
10 10 N 1.34779 * 120.00318 * 35.04719 * 8 7 6
11 11 C 1.46501 * 119.99640 * 5.82334 * 10 8 7
12 12 C 1.46495 * 120.00274 * 185.82365 * 10 8 7
13 13 C 1.53497 * 114.20996 * 120.00323 * 12 10 8
14 14 N 1.47065 * 87.98779 * 87.71565 * 13 12 10
15 15 C 1.36934 * 136.05917 * 207.09008 * 14 13 12
16 16 H 1.08001 * 119.99947 * 354.95678 * 15 14 13
17 17 C 1.38812 * 120.00117 * 174.96084 * 15 14 13
18 18 N 1.31616 * 119.99899 * 184.66533 * 17 15 14
19 19 Si 1.86800 * 119.99719 * 4.65965 * 17 15 14
20 20 H 1.48502 * 109.46990 * 174.48721 * 19 17 15
21 21 H 1.48504 * 109.47350 * 294.48515 * 19 17 15
22 22 H 1.48501 * 109.47227 * 54.48991 * 19 17 15
23 23 C 1.47067 * 87.88337 * 27.34277 * 14 13 12
24 24 C 1.39714 * 119.82691 * 0.27023 * 7 6 5
25 25 C 1.37725 * 119.90837 * 359.44925 * 24 7 6
26 26 C 1.50702 * 119.95057 * 180.24986 * 25 24 7
27 27 H 1.08994 * 109.47630 * 179.97438 * 1 2 3
28 28 H 1.09006 * 109.47414 * 299.99586 * 1 2 3
29 29 H 1.09007 * 109.47179 * 59.99731 * 1 2 3
30 30 H 1.09003 * 109.46904 * 240.00388 * 2 1 3
31 31 H 1.08998 * 109.47362 * 120.00309 * 2 1 3
32 32 H 1.07998 * 119.95824 * 359.97438 * 5 4 3
33 33 H 1.07997 * 120.03875 * 179.97438 * 6 5 4
34 34 H 1.09000 * 109.47211 * 274.60118 * 11 10 8
35 35 H 1.08996 * 109.46955 * 34.60352 * 11 10 8
36 36 H 1.09003 * 109.46856 * 154.60133 * 11 10 8
37 37 H 1.09006 * 113.28193 * 346.93074 * 12 10 8
38 38 H 1.09005 * 113.46261 * 332.93211 * 13 12 10
39 39 H 1.08993 * 113.47012 * 202.49916 * 13 12 10
40 40 H 0.96994 * 120.00101 * 5.00158 * 18 17 15
41 41 H 1.09001 * 113.46953 * 87.43679 * 23 14 13
42 42 H 1.08998 * 113.47154 * 217.87836 * 23 14 13
43 43 H 1.08000 * 120.03944 * 179.72195 * 24 7 6
44 44 H 1.08999 * 109.47340 * 270.29971 * 26 25 24
45 45 H 1.08996 * 109.47364 * 30.30782 * 26 25 24
46 46 H 1.09002 * 109.46767 * 150.30166 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3518 1.5251 0.0005
5 6 4.1969 0.4213 0.0005
6 6 5.5624 0.5975 0.0016
7 6 6.0985 1.8881 0.0033
8 6 7.5618 2.0815 0.0039
9 8 8.0514 3.0150 0.6098
10 7 8.3553 1.2233 -0.6672
11 6 7.7609 0.1753 -1.5007
12 6 9.8120 1.3384 -0.5632
13 6 10.5034 0.0898 0.0015
14 7 10.5677 -0.4323 -1.3719
15 6 10.6079 -1.6705 -1.9552
16 1 10.6756 -2.5554 -1.3397
17 6 10.5617 -1.7884 -3.3375
18 7 10.5077 -2.9794 -3.8950
19 14 10.5762 -0.2565 -4.4065
20 1 10.6547 -0.6512 -5.8360
21 1 9.3320 0.5204 -4.1751
22 1 11.7535 0.5789 -4.0583
23 6 10.5762 0.9609 -1.8429
24 6 5.2457 2.9948 0.0095
25 6 3.8809 2.8101 0.0026
26 6 2.9602 4.0032 0.0036
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 1.8933 -0.5138 -0.8901
31 1 1.8933 -0.5139 0.8899
32 1 3.7818 -0.5757 0.0005
33 1 6.2182 -0.2605 0.0020
34 1 7.5310 -0.6932 -0.8834
35 1 6.8446 0.5498 -1.9567
36 1 8.4652 -0.1105 -2.2821
37 1 10.1389 2.2741 -0.1095
38 1 9.8652 -0.4992 0.6603
39 1 11.4825 0.2941 0.4345
40 1 10.4269 -3.7712 -3.3405
41 1 11.5747 1.3950 -1.8961
42 1 10.0002 1.1143 -2.7554
43 1 5.6563 3.9937 0.0154
44 1 2.7378 4.2897 1.0315
45 1 3.4429 4.8351 -0.5091
46 1 2.0338 3.7476 -0.5108
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001043994216.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:47:47
Heat of formation + Delta-G solvation = 32.297062 kcal
Electronic energy + Delta-G solvation = -27116.133007 eV
Core-core repulsion = 23395.187881 eV
Total energy + Delta-G solvation = -3720.945125 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.75806 -39.89160 -38.32633 -37.13471 -34.47400 -33.03484 -32.30114 -31.92742
-30.11596 -28.34856 -26.91762 -26.36318 -25.36034 -24.59768 -23.54716 -21.99002
-21.50063 -20.16359 -18.60261 -18.33319 -17.57572 -16.94551 -16.47114 -16.43249
-16.11153 -15.13147 -14.89061 -14.69682 -14.21321 -14.12073 -13.96592 -13.79367
-13.32599 -13.31272 -13.03858 -12.98579 -12.87845 -12.68047 -12.48883 -12.16806
-12.02048 -11.85152 -11.78746 -11.38190 -11.36149 -10.98733 -10.91731 -10.79525
-10.65805 -10.38005 -9.67280 -9.28455 -9.21505 -9.00083 -8.96959 -8.30548
-8.12408 -7.21009 -6.37154 -3.30200 0.94621 1.20531 2.88643 2.89802
3.23739 3.29960 3.38867 3.58151 3.72746 4.50414 4.52109 4.57818
4.58628 4.62196 4.74471 4.76739 4.89833 5.02944 5.10333 5.15287
5.25771 5.34593 5.41375 5.42459 5.45958 5.54106 5.63622 5.66465
5.72931 5.79050 5.87053 5.96279 6.03872 6.14414 6.16643 6.18829
6.21334 6.32383 6.33807 6.38090 6.55836 6.63759 7.00179 7.03965
7.15654 7.75290 8.16753 8.40201 8.90665 9.42138 10.29061 11.14130
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015583 B = 0.003555 C = 0.003173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1796.368170 B = 7873.237005 C = 8823.032437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.051 3.949
3 O -0.311 6.311
4 C 0.149 3.851
5 C -0.214 4.214
6 C -0.052 4.052
7 C -0.160 4.160
8 C 0.562 3.438
9 O -0.548 6.548
10 N -0.576 5.576
11 C 0.076 3.924
12 C 0.099 3.901
13 C 0.111 3.889
14 N -0.626 5.626
15 C -0.300 4.300
16 H 0.082 0.918
17 C -0.023 4.023
18 N -0.934 5.934
19 Si 1.066 2.934
20 H -0.295 1.295
21 H -0.290 1.290
22 H -0.289 1.289
23 C 0.078 3.922
24 C -0.028 4.028
25 C -0.130 4.130
26 C -0.101 4.101
27 H 0.078 0.922
28 H 0.065 0.935
29 H 0.066 0.934
30 H 0.065 0.935
31 H 0.063 0.937
32 H 0.133 0.867
33 H 0.142 0.858
34 H 0.057 0.943
35 H 0.059 0.941
36 H 0.103 0.897
37 H 0.108 0.892
38 H 0.048 0.952
39 H 0.049 0.951
40 H 0.261 0.739
41 H 0.056 0.944
42 H 0.061 0.939
43 H 0.138 0.862
44 H 0.067 0.933
45 H 0.066 0.934
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.382 9.028 7.853 21.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.024 4.024
3 O -0.225 6.225
4 C 0.103 3.897
5 C -0.232 4.232
6 C -0.070 4.070
7 C -0.163 4.163
8 C 0.351 3.649
9 O -0.428 6.428
10 N -0.306 5.306
11 C -0.066 4.066
12 C -0.006 4.006
13 C -0.017 4.017
14 N -0.355 5.355
15 C -0.426 4.426
16 H 0.100 0.900
17 C -0.222 4.222
18 N -0.576 5.576
19 Si 0.900 3.100
20 H -0.222 1.222
21 H -0.219 1.219
22 H -0.216 1.216
23 C -0.047 4.047
24 C -0.047 4.047
25 C -0.130 4.130
26 C -0.158 4.158
27 H 0.097 0.903
28 H 0.084 0.916
29 H 0.085 0.915
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.151 0.849
33 H 0.160 0.840
34 H 0.075 0.925
35 H 0.077 0.923
36 H 0.121 0.879
37 H 0.126 0.874
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.072 0.928
41 H 0.073 0.927
42 H 0.078 0.922
43 H 0.155 0.845
44 H 0.086 0.914
45 H 0.085 0.915
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -18.229 9.888 6.463 21.722
hybrid contribution 0.329 -1.118 1.584 1.966
sum -17.900 8.770 8.047 21.496
Atomic orbital electron populations
1.21772 0.92666 1.02933 1.03476 1.22841 0.95905 0.81873 1.01769
1.86010 1.18966 1.29435 1.88066 1.19006 0.82254 0.93593 0.94889
1.21172 0.93990 0.98142 1.09923 1.21561 0.94800 0.96992 0.93662
1.19778 0.93184 0.94107 1.09222 1.18229 0.86155 0.81684 0.78850
1.90733 1.76064 1.31157 1.44829 1.47258 1.05560 1.31514 1.46239
1.22205 0.99117 0.89308 0.96007 1.22493 0.79484 0.99405 0.99246
1.22775 0.97199 0.92052 0.89650 1.46286 1.87259 1.00310 1.01634
1.20142 1.49153 0.81278 0.92022 0.90015 1.25611 0.99456 1.03255
0.93837 1.70906 1.51977 0.97438 1.37281 0.83819 0.76164 0.74048
0.76009 1.22219 1.21862 1.21621 1.23291 0.97801 0.87040 0.96613
1.20899 0.90979 0.98716 0.94080 1.19137 0.93873 0.92683 1.07348
1.20579 0.98363 0.94573 1.02300 0.90307 0.91552 0.91496 0.91700
0.91832 0.84940 0.84027 0.92475 0.92271 0.87869 0.87437 0.93372
0.93343 0.92844 0.92656 0.92177 0.84470 0.91422 0.91539 0.91197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16
2 C 0.05 0.39 5.45 37.16 0.20 0.59 16
3 O -0.31 -3.28 9.16 -18.87 -0.17 -3.45 16
4 C 0.15 1.76 6.67 -39.02 -0.26 1.50 16
5 C -0.21 -2.49 9.01 -39.49 -0.36 -2.85 16
6 C -0.05 -0.69 7.79 -39.22 -0.31 -1.00 16
7 C -0.16 -2.39 5.17 -104.96 -0.54 -2.93 16
8 C 0.56 9.89 7.36 -12.44 -0.09 9.79 16
9 O -0.55 -10.87 16.32 5.29 0.09 -10.78 16
10 N -0.58 -10.40 3.12 -174.76 -0.54 -10.94 16
11 C 0.08 1.35 8.05 59.85 0.48 1.83 16
12 C 0.10 1.84 4.69 -67.68 -0.32 1.52 16
13 C 0.11 2.17 8.31 -8.51 -0.07 2.10 16
14 N -0.63 -14.61 2.40 -184.63 -0.44 -15.05 16
15 C -0.30 -8.15 10.56 -15.06 -0.16 -8.31 16
16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16
17 C -0.02 -0.64 5.47 -17.43 -0.10 -0.74 16
18 N -0.93 -28.33 13.70 55.49 0.76 -27.57 16
19 Si 1.07 25.88 24.18 -169.99 -4.11 21.77 16
20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
21 H -0.29 -6.49 5.77 56.52 0.33 -6.16 16
22 H -0.29 -6.71 6.73 56.52 0.38 -6.33 16
23 C 0.08 1.63 5.00 -8.38 -0.04 1.59 16
24 C -0.03 -0.37 9.25 -39.22 -0.36 -0.74 16
25 C -0.13 -1.56 5.89 -104.54 -0.62 -2.17 16
26 C -0.10 -0.96 9.78 36.01 0.35 -0.61 16
27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16
31 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16
32 H 0.13 1.24 6.28 -52.49 -0.33 0.91 16
33 H 0.14 1.87 5.23 -52.49 -0.27 1.59 16
34 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16
35 H 0.06 0.93 6.49 -51.93 -0.34 0.60 16
36 H 0.10 2.19 3.59 -51.93 -0.19 2.01 16
37 H 0.11 1.90 7.26 -51.93 -0.38 1.52 16
38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16
41 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16
42 H 0.06 1.30 3.41 -51.93 -0.18 1.12 16
43 H 0.14 1.75 7.99 -52.49 -0.42 1.33 16
44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16
46 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16
LS Contribution 358.47 15.07 5.40 5.40
Total: -1.00 -32.17 358.47 -7.49 -39.66
By element:
Atomic # 1 Polarization: 8.53 SS G_CDS: -6.66 Total: 1.87 kcal
Atomic # 6 Polarization: 0.90 SS G_CDS: -1.80 Total: -0.90 kcal
Atomic # 7 Polarization: -53.34 SS G_CDS: -0.23 Total: -53.56 kcal
Atomic # 8 Polarization: -14.15 SS G_CDS: -0.09 Total: -14.24 kcal
Atomic # 14 Polarization: 25.88 SS G_CDS: -4.11 Total: 21.77 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -32.17 -7.49 -39.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001043994216.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal
(2) G-P(sol) polarization free energy of solvation -32.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds