Wall clock time and date at job start Tue Mar 31 2020 13:47:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.42898 * 109.47005 * 2 1
4 4 C 1.35720 * 117.00017 * 179.97438 * 3 2 1
5 5 C 1.39019 * 119.90819 * 0.02562 * 4 3 2
6 6 C 1.37687 * 120.08530 * 180.02562 * 5 4 3
7 7 C 1.39751 * 119.90913 * 0.02562 * 6 5 4
8 8 C 1.47601 * 120.08464 * 180.02562 * 7 6 5
9 9 O 1.21584 * 120.00156 * 215.05306 * 8 7 6
10 10 N 1.34779 * 120.00318 * 35.04719 * 8 7 6
11 11 C 1.46501 * 119.99640 * 5.82334 * 10 8 7
12 12 C 1.46495 * 120.00274 * 185.82365 * 10 8 7
13 13 C 1.53497 * 114.20996 * 120.00323 * 12 10 8
14 14 N 1.47065 * 87.98779 * 87.71565 * 13 12 10
15 15 C 1.36934 * 136.05917 * 207.09008 * 14 13 12
16 16 H 1.08001 * 119.99947 * 354.95678 * 15 14 13
17 17 C 1.38812 * 120.00117 * 174.96084 * 15 14 13
18 18 N 1.31616 * 119.99899 * 184.66533 * 17 15 14
19 19 Si 1.86800 * 119.99719 * 4.65965 * 17 15 14
20 20 H 1.48502 * 109.46990 * 174.48721 * 19 17 15
21 21 H 1.48504 * 109.47350 * 294.48515 * 19 17 15
22 22 H 1.48501 * 109.47227 * 54.48991 * 19 17 15
23 23 C 1.47067 * 87.88337 * 27.34277 * 14 13 12
24 24 C 1.39714 * 119.82691 * 0.27023 * 7 6 5
25 25 C 1.37725 * 119.90837 * 359.44925 * 24 7 6
26 26 C 1.50702 * 119.95057 * 180.24986 * 25 24 7
27 27 H 1.08994 * 109.47630 * 179.97438 * 1 2 3
28 28 H 1.09006 * 109.47414 * 299.99586 * 1 2 3
29 29 H 1.09007 * 109.47179 * 59.99731 * 1 2 3
30 30 H 1.09003 * 109.46904 * 240.00388 * 2 1 3
31 31 H 1.08998 * 109.47362 * 120.00309 * 2 1 3
32 32 H 1.07998 * 119.95824 * 359.97438 * 5 4 3
33 33 H 1.07997 * 120.03875 * 179.97438 * 6 5 4
34 34 H 1.09000 * 109.47211 * 274.60118 * 11 10 8
35 35 H 1.08996 * 109.46955 * 34.60352 * 11 10 8
36 36 H 1.09003 * 109.46856 * 154.60133 * 11 10 8
37 37 H 1.09006 * 113.28193 * 346.93074 * 12 10 8
38 38 H 1.09005 * 113.46261 * 332.93211 * 13 12 10
39 39 H 1.08993 * 113.47012 * 202.49916 * 13 12 10
40 40 H 0.96994 * 120.00101 * 5.00158 * 18 17 15
41 41 H 1.09001 * 113.46953 * 87.43679 * 23 14 13
42 42 H 1.08998 * 113.47154 * 217.87836 * 23 14 13
43 43 H 1.08000 * 120.03944 * 179.72195 * 24 7 6
44 44 H 1.08999 * 109.47340 * 270.29971 * 26 25 24
45 45 H 1.08996 * 109.47364 * 30.30782 * 26 25 24
46 46 H 1.09002 * 109.46767 * 150.30166 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3518 1.5251 0.0005
5 6 4.1969 0.4213 0.0005
6 6 5.5624 0.5975 0.0016
7 6 6.0985 1.8881 0.0033
8 6 7.5618 2.0815 0.0039
9 8 8.0514 3.0150 0.6098
10 7 8.3553 1.2233 -0.6672
11 6 7.7609 0.1753 -1.5007
12 6 9.8120 1.3384 -0.5632
13 6 10.5034 0.0898 0.0015
14 7 10.5677 -0.4323 -1.3719
15 6 10.6079 -1.6705 -1.9552
16 1 10.6756 -2.5554 -1.3397
17 6 10.5617 -1.7884 -3.3375
18 7 10.5077 -2.9794 -3.8950
19 14 10.5762 -0.2565 -4.4065
20 1 10.6547 -0.6512 -5.8360
21 1 9.3320 0.5204 -4.1751
22 1 11.7535 0.5789 -4.0583
23 6 10.5762 0.9609 -1.8429
24 6 5.2457 2.9948 0.0095
25 6 3.8809 2.8101 0.0026
26 6 2.9602 4.0032 0.0036
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 1.8933 -0.5138 -0.8901
31 1 1.8933 -0.5139 0.8899
32 1 3.7818 -0.5757 0.0005
33 1 6.2182 -0.2605 0.0020
34 1 7.5310 -0.6932 -0.8834
35 1 6.8446 0.5498 -1.9567
36 1 8.4652 -0.1105 -2.2821
37 1 10.1389 2.2741 -0.1095
38 1 9.8652 -0.4992 0.6603
39 1 11.4825 0.2941 0.4345
40 1 10.4269 -3.7712 -3.3405
41 1 11.5747 1.3950 -1.8961
42 1 10.0002 1.1143 -2.7554
43 1 5.6563 3.9937 0.0154
44 1 2.7378 4.2897 1.0315
45 1 3.4429 4.8351 -0.5091
46 1 2.0338 3.7476 -0.5108
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001043994216.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:47:46
Heat of formation + Delta-G solvation = 12.683930 kcal
Electronic energy + Delta-G solvation = -27116.983496 eV
Core-core repulsion = 23395.187881 eV
Total energy + Delta-G solvation = -3721.795615 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.92070 -41.07853 -39.70837 -38.20201 -35.91314 -34.56087 -33.79753 -32.58034
-31.12521 -30.07350 -28.04941 -27.68398 -26.97202 -25.60218 -24.68505 -23.47925
-22.33727 -21.59779 -20.19043 -19.40802 -19.19751 -18.27531 -17.89589 -17.26858
-17.10024 -16.72331 -16.25042 -15.89082 -15.63588 -15.53767 -15.19759 -14.98018
-14.77631 -14.43570 -14.28866 -13.96433 -13.65784 -13.62379 -13.55720 -13.31385
-13.29351 -12.96883 -12.75909 -12.64074 -12.61451 -12.56793 -12.40767 -12.15619
-11.72207 -11.65678 -11.32043 -11.13054 -11.00157 -10.95409 -9.95354 -9.67007
-9.18385 -9.18080 -8.59402 -5.44320 -0.09900 0.25258 1.37105 1.46210
1.63128 1.66427 1.88281 2.15512 2.52409 2.67216 2.94890 3.22101
3.43260 3.58968 3.65980 3.75862 4.06526 4.08751 4.13953 4.17797
4.22963 4.26841 4.31096 4.38470 4.44708 4.53996 4.60299 4.61634
4.65586 4.75582 4.81706 4.83877 4.85764 4.89065 4.95847 5.04405
5.14092 5.16852 5.20518 5.25607 5.28168 5.36250 5.55784 5.65984
5.96891 6.32499 6.36025 6.72171 7.02665 7.33456 8.27346 8.94726
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015583 B = 0.003555 C = 0.003173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1796.368170 B = 7873.237005 C = 8823.032437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.040 3.960
3 O -0.316 6.316
4 C 0.151 3.849
5 C -0.211 4.211
6 C -0.055 4.055
7 C -0.182 4.182
8 C 0.565 3.435
9 O -0.574 6.574
10 N -0.580 5.580
11 C 0.085 3.915
12 C 0.113 3.887
13 C 0.112 3.888
14 N -0.648 5.648
15 C -0.278 4.278
16 H 0.051 0.949
17 C -0.073 4.073
18 N -0.972 5.972
19 Si 1.099 2.901
20 H -0.308 1.308
21 H -0.263 1.263
22 H -0.271 1.271
23 C 0.076 3.924
24 C -0.032 4.032
25 C -0.134 4.134
26 C -0.099 4.099
27 H 0.097 0.903
28 H 0.065 0.935
29 H 0.064 0.936
30 H 0.071 0.929
31 H 0.072 0.928
32 H 0.155 0.845
33 H 0.140 0.860
34 H 0.060 0.940
35 H 0.078 0.922
36 H 0.071 0.929
37 H 0.124 0.876
38 H 0.045 0.955
39 H 0.070 0.930
40 H 0.248 0.752
41 H 0.074 0.926
42 H 0.055 0.945
43 H 0.140 0.860
44 H 0.076 0.924
45 H 0.076 0.924
46 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.183 10.755 8.507 24.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.034 4.034
3 O -0.230 6.230
4 C 0.104 3.896
5 C -0.230 4.230
6 C -0.074 4.074
7 C -0.185 4.185
8 C 0.356 3.644
9 O -0.455 6.455
10 N -0.310 5.310
11 C -0.057 4.057
12 C 0.008 3.992
13 C -0.014 4.014
14 N -0.377 5.377
15 C -0.405 4.405
16 H 0.069 0.931
17 C -0.266 4.266
18 N -0.617 5.617
19 Si 0.927 3.073
20 H -0.237 1.237
21 H -0.190 1.190
22 H -0.196 1.196
23 C -0.049 4.049
24 C -0.051 4.051
25 C -0.134 4.134
26 C -0.156 4.156
27 H 0.116 0.884
28 H 0.084 0.916
29 H 0.083 0.917
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.173 0.827
33 H 0.157 0.843
34 H 0.078 0.922
35 H 0.097 0.903
36 H 0.090 0.910
37 H 0.142 0.858
38 H 0.064 0.936
39 H 0.087 0.913
40 H 0.057 0.943
41 H 0.091 0.909
42 H 0.073 0.927
43 H 0.157 0.843
44 H 0.095 0.905
45 H 0.095 0.905
46 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -20.049 11.644 7.168 24.268
hybrid contribution 0.773 -1.687 1.522 2.400
sum -19.276 9.958 8.690 23.372
Atomic orbital electron populations
1.21795 0.91220 1.04144 1.03357 1.23148 0.97105 0.80632 1.02509
1.86025 1.18023 1.31349 1.87563 1.19150 0.83010 0.93603 0.93800
1.21382 0.93256 0.99346 1.09003 1.21540 0.95567 0.96256 0.94024
1.19666 0.91670 0.95313 1.11858 1.18587 0.87140 0.80814 0.77878
1.90708 1.76782 1.32162 1.45857 1.47327 1.05418 1.31749 1.46529
1.22088 0.98896 0.89595 0.95157 1.22347 0.79796 0.99387 0.97655
1.22945 0.98307 0.92136 0.88028 1.46247 1.87521 1.00164 1.03792
1.19922 1.46607 0.82265 0.91739 0.93102 1.26691 0.99823 1.04585
0.95482 1.71002 1.55394 0.97926 1.37402 0.83432 0.78041 0.72050
0.73762 1.23690 1.19028 1.19645 1.23455 0.98922 0.85204 0.97340
1.20965 0.91486 0.98426 0.94200 1.19406 0.93697 0.93830 1.06514
1.20622 0.97989 0.93910 1.03078 0.88442 0.91588 0.91697 0.91076
0.90936 0.82722 0.84277 0.92199 0.90332 0.91030 0.85833 0.93634
0.91261 0.94297 0.90895 0.92709 0.84259 0.90533 0.90480 0.90840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16
2 C 0.04 0.51 5.45 71.98 0.39 0.90 16
3 O -0.32 -5.88 9.16 -90.42 -0.83 -6.71 16
4 C 0.15 3.24 6.67 22.63 0.15 3.39 16
5 C -0.21 -4.47 9.01 22.33 0.20 -4.27 16
6 C -0.06 -1.40 7.79 22.51 0.18 -1.22 16
7 C -0.18 -5.20 5.17 -20.08 -0.10 -5.31 16
8 C 0.56 19.15 7.36 86.71 0.64 19.79 16
9 O -0.57 -22.03 16.32 -3.98 -0.06 -22.10 16
10 N -0.58 -20.12 3.12 -825.07 -2.57 -22.69 16
11 C 0.08 2.94 8.05 127.77 1.03 3.96 16
12 C 0.11 4.00 4.69 45.55 0.21 4.21 16
13 C 0.11 4.23 8.31 83.18 0.69 4.92 16
14 N -0.65 -29.66 2.40 -738.04 -1.77 -31.43 16
15 C -0.28 -15.31 10.56 84.03 0.89 -14.42 16
16 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16
17 C -0.07 -4.20 5.47 84.86 0.46 -3.73 16
18 N -0.97 -60.67 13.70 21.65 0.30 -60.37 16
19 Si 1.10 51.87 24.18 68.60 1.66 53.53 16
20 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16
21 H -0.26 -11.17 5.77 99.48 0.57 -10.60 16
22 H -0.27 -11.82 6.73 99.48 0.67 -11.15 16
23 C 0.08 2.99 5.00 83.26 0.42 3.41 16
24 C -0.03 -0.81 9.25 22.51 0.21 -0.60 16
25 C -0.13 -2.94 5.89 -19.81 -0.12 -3.06 16
26 C -0.10 -1.65 9.78 71.24 0.70 -0.96 16
27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16
28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16
29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16
30 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16
31 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16
32 H 0.16 2.49 6.28 -2.91 -0.02 2.47 16
33 H 0.14 3.51 5.23 -2.91 -0.02 3.50 16
34 H 0.06 2.00 6.39 -2.39 -0.02 1.99 16
35 H 0.08 2.37 6.49 -2.39 -0.02 2.36 16
36 H 0.07 2.97 3.59 -2.39 -0.01 2.96 16
37 H 0.12 4.04 7.26 -2.38 -0.02 4.03 16
38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16
39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
40 H 0.25 15.54 8.73 -92.71 -0.81 14.73 16
41 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16
42 H 0.06 2.24 3.41 -2.39 -0.01 2.24 16
43 H 0.14 3.38 7.99 -2.91 -0.02 3.35 16
44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
45 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16
46 H 0.07 1.17 7.52 -2.39 -0.02 1.15 16
Total: -1.00 -69.72 358.47 4.19 -65.53
By element:
Atomic # 1 Polarization: 17.02 SS G_CDS: 0.79 Total: 17.80 kcal
Atomic # 6 Polarization: -0.25 SS G_CDS: 6.68 Total: 6.44 kcal
Atomic # 7 Polarization: -110.45 SS G_CDS: -4.04 Total: -114.49 kcal
Atomic # 8 Polarization: -27.91 SS G_CDS: -0.89 Total: -28.81 kcal
Atomic # 14 Polarization: 51.87 SS G_CDS: 1.66 Total: 53.53 kcal
Total: -69.72 4.19 -65.53 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001043994216.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.212 kcal
(2) G-P(sol) polarization free energy of solvation -69.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds