Wall clock time and date at job start Tue Mar 31 2020 13:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47142 * 2 1 4 4 C 1.35899 * 117.00440 * 179.97438 * 3 2 1 5 5 C 1.38759 * 120.05156 * 0.02562 * 4 3 2 6 6 C 1.38117 * 119.94234 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.05780 * 359.74673 * 6 5 4 8 8 C 1.38245 * 120.10865 * 0.50998 * 7 6 5 9 9 C 1.50704 * 119.96906 * 179.76641 * 8 7 6 10 10 C 1.50697 * 109.47231 * 269.72203 * 9 8 7 11 11 O 1.21285 * 119.99698 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99967 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00081 * 179.97438 * 12 10 9 15 15 C 1.53498 * 114.20710 * 120.00023 * 14 12 10 16 16 N 1.47067 * 87.98492 * 87.52151 * 15 14 12 17 17 C 1.36942 * 136.06015 * 207.08701 * 16 15 14 18 18 H 1.08004 * 119.99347 * 7.75208 * 17 16 15 19 19 C 1.38804 * 120.00122 * 187.74457 * 17 16 15 20 20 N 1.31616 * 119.99944 * 173.06636 * 19 17 16 21 21 Si 1.86802 * 120.00216 * 353.07036 * 19 17 16 22 22 H 1.48493 * 109.47387 * 175.20665 * 21 19 17 23 23 H 1.48496 * 109.47320 * 295.20989 * 21 19 17 24 24 H 1.48507 * 109.46785 * 55.20955 * 21 19 17 25 25 C 1.47068 * 87.88610 * 27.34499 * 16 15 14 26 26 C 1.38165 * 120.05675 * 359.48637 * 8 7 6 27 27 H 1.09004 * 109.46679 * 59.99873 * 1 2 3 28 28 H 1.08992 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47022 * 300.00402 * 1 2 3 30 30 H 1.09000 * 109.47301 * 240.00063 * 2 1 3 31 31 H 1.08999 * 109.47076 * 119.99880 * 2 1 3 32 32 H 1.07995 * 120.02495 * 359.95517 * 5 4 3 33 33 H 1.08002 * 119.97552 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.94473 * 180.27714 * 7 6 5 35 35 H 1.09003 * 109.46937 * 149.72211 * 9 8 7 36 36 H 1.09001 * 109.46822 * 29.72395 * 9 8 7 37 37 H 1.08997 * 109.46792 * 269.99735 * 13 12 10 38 38 H 1.08997 * 109.47184 * 29.99889 * 13 12 10 39 39 H 1.09001 * 109.47056 * 150.00356 * 13 12 10 40 40 H 1.08998 * 113.28362 * 346.93941 * 14 12 10 41 41 H 1.09002 * 113.46537 * 332.74332 * 15 14 12 42 42 H 1.08995 * 113.47432 * 202.30442 * 15 14 12 43 43 H 0.97001 * 120.00186 * 1.94734 * 20 19 17 44 44 H 1.08991 * 113.46677 * 87.43420 * 25 16 15 45 45 H 1.08994 * 113.46994 * 217.88229 * 25 16 15 46 46 H 1.07998 * 120.02613 * 180.23273 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5688 0.6095 0.0005 7 6 6.0962 1.8879 -0.0047 8 6 5.2551 2.9850 0.0006 9 6 5.8332 4.3768 0.0002 10 6 6.0258 4.8412 1.4208 11 8 5.7238 4.1134 2.3429 12 7 6.5335 6.0651 1.6667 13 6 6.8978 6.9444 0.5529 14 6 6.7202 6.5168 3.0478 15 6 8.1733 6.8556 3.4082 16 7 7.9241 8.2176 2.9125 17 6 8.6797 9.2243 2.3731 18 1 9.7133 9.0453 2.1162 19 6 8.1170 10.4746 2.1563 20 7 8.8741 11.4784 1.7672 21 14 6.2854 10.7325 2.4169 22 1 5.9567 12.1690 2.2338 23 1 5.5261 9.9215 1.4316 24 1 5.9171 10.3120 3.7928 25 6 6.5073 8.0252 3.2570 26 6 3.8850 2.8067 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5727 0.0008 33 1 6.2281 -0.2460 0.0001 34 1 7.1669 2.0294 -0.0092 35 1 5.1507 5.0535 -0.5139 36 1 6.7945 4.3707 -0.5136 37 1 7.9374 6.7687 0.2764 38 1 6.2541 6.7344 -0.3012 39 1 6.7730 7.9842 0.8551 40 1 6.2136 5.8872 3.7792 41 1 8.9064 6.3061 2.8177 42 1 8.3764 6.8135 4.4783 43 1 9.8201 11.3379 1.6047 44 1 6.2712 8.2913 4.2872 45 1 5.8211 8.4720 2.5377 46 1 3.2284 3.6641 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044340117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:59 Heat of formation + Delta-G solvation = 4.599610 kcal Electronic energy + Delta-G solvation = -26490.292672 eV Core-core repulsion = 22768.146495 eV Total energy + Delta-G solvation = -3722.146177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.63973 -41.01260 -39.69468 -38.37699 -35.71007 -34.47224 -33.52892 -32.88177 -30.58180 -30.20551 -28.62515 -27.67267 -26.96575 -24.91683 -24.19867 -23.50304 -22.41068 -21.34151 -20.06385 -19.31126 -18.77938 -18.25138 -17.58319 -17.15841 -17.02069 -17.01445 -16.45627 -16.30033 -15.78958 -15.65415 -15.12803 -15.02563 -14.49340 -14.37767 -14.16026 -14.13176 -14.01820 -13.45453 -13.40795 -13.25797 -12.91374 -12.89798 -12.80621 -12.61239 -12.53525 -12.42728 -12.38979 -12.12665 -11.69435 -11.62820 -11.31545 -11.14893 -11.01428 -10.87415 -9.78868 -9.58545 -9.17535 -9.12367 -8.60799 -5.43399 0.32511 0.51788 1.40029 1.48607 1.58893 1.67881 1.96894 2.27657 2.55054 2.81777 2.93856 3.26059 3.56688 3.64602 3.79141 3.87090 4.05862 4.09369 4.13956 4.21962 4.25439 4.31769 4.34741 4.37260 4.42612 4.50388 4.58277 4.62355 4.64443 4.68620 4.73745 4.79083 4.90312 4.91784 4.93835 5.08700 5.14751 5.20332 5.20964 5.35727 5.48117 5.57699 5.63681 5.83801 5.97381 6.46246 6.49931 6.72518 7.15150 7.34801 8.29338 8.94392 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002697 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.431420 B =10377.952136 C =10861.829600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.337 6.337 4 C 0.115 3.885 5 C -0.213 4.213 6 C -0.082 4.082 7 C -0.155 4.155 8 C -0.033 4.033 9 C -0.096 4.096 10 C 0.518 3.482 11 O -0.573 6.573 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.116 3.884 15 C 0.110 3.890 16 N -0.648 5.648 17 C -0.278 4.278 18 H 0.050 0.950 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 1.102 2.898 22 H -0.310 1.310 23 H -0.264 1.264 24 H -0.266 1.266 25 C 0.084 3.916 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.246 0.754 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -25.705 -6.696 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.070 3.930 5 C -0.231 4.231 6 C -0.100 4.100 7 C -0.174 4.174 8 C -0.034 4.034 9 C -0.135 4.135 10 C 0.308 3.692 11 O -0.452 6.452 12 N -0.318 5.318 13 C -0.058 4.058 14 C 0.010 3.990 15 C -0.016 4.016 16 N -0.377 5.377 17 C -0.405 4.405 18 H 0.068 0.932 19 C -0.272 4.272 20 N -0.617 5.617 21 Si 0.929 3.071 22 H -0.238 1.238 23 H -0.190 1.190 24 H -0.192 1.192 25 C -0.042 4.042 26 C -0.178 4.178 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.196 -24.651 -6.376 29.652 hybrid contribution 2.091 -0.552 0.284 2.181 sum -13.105 -25.203 -6.092 29.052 Atomic orbital electron populations 1.21813 0.91632 1.04192 1.03063 1.23056 0.96817 0.80781 1.02259 1.86049 1.18939 1.31406 1.88771 1.19082 0.82751 0.94369 0.96846 1.21478 0.94498 0.98473 1.08688 1.21223 0.94686 0.97643 0.96434 1.21175 1.00285 0.92393 1.03500 1.19201 0.92344 0.94576 0.97280 1.20777 1.05296 0.94411 0.93035 1.20993 0.75880 0.80112 0.92233 1.90674 1.52119 1.54812 1.47632 1.47501 1.62232 1.15717 1.06379 1.21871 1.00605 0.94974 0.88359 1.22286 0.97248 0.94950 0.84535 1.22933 0.95816 0.84881 0.97997 1.46122 1.05151 1.14694 1.71751 1.19854 0.94064 0.90477 1.36138 0.93209 1.26868 1.09718 0.90433 1.00174 1.71025 1.06711 1.31592 1.52327 0.83362 0.71371 0.74356 0.78041 1.23824 1.19044 1.19153 1.23341 0.87427 0.93812 0.99570 1.20371 0.94905 0.95437 1.07072 0.91809 0.88005 0.92247 0.90749 0.91428 0.83450 0.83207 0.84907 0.85670 0.85387 0.92984 0.88394 0.91932 0.86464 0.93756 0.91964 0.94445 0.91382 0.92719 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.62 5.46 71.98 0.39 1.02 16 3 O -0.34 -7.50 10.14 -92.41 -0.94 -8.43 16 4 C 0.11 2.70 6.69 22.51 0.15 2.85 16 5 C -0.21 -4.11 9.04 22.37 0.20 -3.90 16 6 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 7 C -0.16 -3.34 9.70 22.28 0.22 -3.12 16 8 C -0.03 -0.79 4.37 -19.88 -0.09 -0.88 16 9 C -0.10 -2.06 4.38 29.10 0.13 -1.93 16 10 C 0.52 15.42 7.67 87.66 0.67 16.10 16 11 O -0.57 -20.87 15.54 -3.05 -0.05 -20.92 16 12 N -0.59 -18.60 3.12 -821.39 -2.56 -21.15 16 13 C 0.08 2.58 9.34 127.77 1.19 3.77 16 14 C 0.12 3.99 4.69 45.55 0.21 4.20 16 15 C 0.11 4.19 8.31 83.18 0.69 4.88 16 16 N -0.65 -29.69 2.40 -737.96 -1.77 -31.46 16 17 C -0.28 -15.36 10.69 84.03 0.90 -14.46 16 18 H 0.05 3.01 8.05 -2.91 -0.02 2.99 16 19 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 20 N -0.97 -61.21 13.71 21.65 0.30 -60.92 16 21 Si 1.10 51.67 24.72 68.60 1.70 53.37 16 22 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 23 H -0.26 -11.02 6.48 99.48 0.64 -10.37 16 24 H -0.27 -11.44 6.16 99.48 0.61 -10.83 16 25 C 0.08 3.28 4.72 83.27 0.39 3.67 16 26 C -0.16 -3.99 9.64 22.37 0.22 -3.77 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.15 2.01 6.30 -2.91 -0.02 1.99 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.13 2.17 7.34 -2.39 -0.02 2.15 16 36 H 0.13 2.18 8.05 -2.39 -0.02 2.16 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 39 H 0.06 2.38 4.85 -2.39 -0.01 2.37 16 40 H 0.12 3.86 7.29 -2.39 -0.02 3.84 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.25 15.64 8.73 -92.71 -0.81 14.83 16 44 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 45 H 0.05 2.17 3.88 -2.39 -0.01 2.16 16 46 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -73.80 366.83 4.17 -69.63 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.78 Total: 17.73 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 6.71 Total: 2.16 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.03 Total: -113.54 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.98 Total: -29.35 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.70 Total: 53.37 kcal Total: -73.80 4.17 -69.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044340117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.230 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds