Wall clock time and date at job start Tue Mar 31 2020 12:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47443 * 2 1 4 4 O 1.42903 * 109.47449 * 239.99826 * 2 1 3 5 5 C 1.35900 * 116.99768 * 84.94925 * 4 2 1 6 6 C 1.38734 * 120.05170 * 174.27940 * 5 4 2 7 7 C 1.38149 * 119.94107 * 179.74963 * 6 5 4 8 8 C 1.38268 * 120.05439 * 0.49906 * 7 6 5 9 9 C 1.38265 * 120.11166 * 359.77873 * 8 7 6 10 10 C 1.38151 * 120.05832 * 359.96853 * 9 8 7 11 11 C 1.50703 * 109.47014 * 119.99996 * 2 1 3 12 12 O 1.21285 * 120.00199 * 114.99526 * 11 2 1 13 13 N 1.34773 * 120.00185 * 295.00131 * 11 2 1 14 14 C 1.46497 * 120.00354 * 179.97438 * 13 11 2 15 15 C 1.53005 * 109.47165 * 179.97438 * 14 13 11 16 16 C 1.53774 * 113.61268 * 274.13688 * 15 14 13 17 17 C 1.53963 * 87.02031 * 220.04962 * 16 15 14 18 18 N 1.46498 * 113.53408 * 270.81638 * 17 16 15 19 19 C 1.36943 * 119.99789 * 252.48986 * 18 17 16 20 20 H 1.08004 * 119.99711 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99909 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47378 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47433 * 119.99926 * 23 21 19 26 26 H 1.48504 * 109.47274 * 240.00096 * 23 21 19 27 27 C 1.53780 * 113.61121 * 176.52839 * 15 14 13 28 28 H 1.09003 * 109.47131 * 60.00072 * 1 2 3 29 29 H 1.08993 * 109.47224 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02897 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.97207 * 180.23135 * 7 6 5 33 33 H 1.08002 * 119.94357 * 179.74409 * 8 7 6 34 34 H 1.08007 * 119.97244 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.02689 * 179.97438 * 10 9 8 36 36 H 0.97004 * 120.00000 * 0.02562 * 13 11 2 37 37 H 1.08998 * 109.47305 * 299.99704 * 14 13 11 38 38 H 1.09002 * 109.46800 * 60.00143 * 14 13 11 39 39 H 1.08994 * 112.84725 * 45.33563 * 15 14 13 40 40 H 1.09004 * 113.62021 * 334.56511 * 16 15 14 41 41 H 1.08994 * 113.61564 * 105.47453 * 16 15 14 42 42 H 1.08994 * 113.74347 * 139.94414 * 17 16 15 43 43 H 0.97001 * 120.00672 * 72.49533 * 18 17 16 44 44 H 0.97005 * 119.99761 * 179.97438 * 22 21 19 45 45 H 1.08996 * 113.61671 * 254.53063 * 27 15 14 46 46 H 1.08999 * 113.61660 * 25.43680 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1116 0.0623 -2.3044 6 6 2.6777 -0.4943 -3.4421 7 6 2.7788 0.2542 -4.5988 8 6 2.3257 1.5604 -4.6202 9 6 1.7663 2.1192 -3.4859 10 6 1.6582 1.3732 -2.3282 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7468 1.1216 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6482 15 6 1.8755 -0.0945 4.8943 16 6 2.8688 1.0189 5.2663 17 6 2.6471 0.6152 6.7355 18 7 1.5362 1.3239 7.3756 19 6 1.7896 2.2929 8.3095 20 1 2.8085 2.5348 8.5737 21 6 0.7370 2.9640 8.9165 22 7 -0.5046 2.6688 8.5948 23 14 1.0828 4.2863 10.1899 24 1 2.5499 4.4267 10.3718 25 1 0.5149 5.5785 9.7285 26 1 0.4586 3.9044 11.4821 27 6 2.2679 -0.7808 6.2133 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.0358 -1.5130 -3.4246 32 1 3.2160 -0.1797 -5.4858 33 1 2.4093 2.1453 -5.5242 34 1 1.4135 3.1399 -3.5050 35 1 1.2216 1.8103 -1.4424 36 1 1.2951 0.6344 2.5392 37 1 1.8446 -1.8835 3.6940 38 1 3.3660 -0.9637 3.6048 39 1 0.8377 0.2374 4.8667 40 1 3.8831 0.8358 4.9116 41 1 2.5107 2.0206 5.0291 42 1 3.5571 0.6247 7.3353 43 1 0.6211 1.1068 7.1381 44 1 -1.2401 3.1376 9.0193 45 1 1.4255 -1.2298 6.7394 46 1 3.1176 -1.4568 6.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100938318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:16 Heat of formation + Delta-G solvation = -17.424201 kcal Electronic energy + Delta-G solvation = -25532.110381 eV Core-core repulsion = 21809.009180 eV Total energy + Delta-G solvation = -3723.101201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88477 -39.63847 -38.57748 -37.49832 -34.77699 -33.36497 -32.47419 -31.13745 -30.20230 -29.89892 -27.48278 -25.12441 -24.93570 -23.75101 -23.09054 -22.42905 -21.67296 -20.43599 -18.73628 -18.48968 -17.67984 -17.15086 -16.52625 -16.03933 -15.97375 -15.56687 -15.14991 -14.82977 -14.77790 -14.25294 -14.14812 -13.85946 -13.70729 -13.48750 -13.32906 -12.94204 -12.81628 -12.72273 -12.31961 -12.15259 -11.97063 -11.89336 -11.49663 -11.36651 -11.12982 -11.08430 -10.89793 -10.53979 -10.19883 -10.12846 -9.81742 -9.74228 -9.52064 -9.33462 -9.10590 -8.93524 -8.52051 -7.04890 -5.85601 -3.14644 0.99840 1.11481 2.38147 2.42344 3.37951 3.38995 3.44434 3.46331 3.46417 4.26923 4.43321 4.51621 4.52750 4.54299 4.59346 4.80281 4.98499 4.99667 5.03598 5.05723 5.17085 5.20123 5.26587 5.34576 5.40668 5.56021 5.64626 5.66723 5.69317 5.81137 5.89295 5.97793 6.04956 6.07064 6.16624 6.20294 6.29588 6.32517 6.42462 6.53591 6.68824 6.84097 6.98884 7.05335 7.36367 7.65328 8.04964 8.33629 9.44504 10.01713 10.35855 11.36834 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002090 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.327234 B =13396.583783 C =14201.210727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.099 0.901 4 O -0.285 6.285 5 C 0.132 3.868 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.161 4.161 9 C -0.079 4.079 10 C -0.213 4.213 11 C 0.516 3.484 12 O -0.522 6.522 13 N -0.718 5.718 14 C 0.132 3.868 15 C -0.120 4.120 16 C -0.169 4.169 17 C 0.167 3.833 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.403 0.597 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.069 0.931 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 -3.800 -24.464 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.231 4.231 11 C 0.300 3.700 12 O -0.397 6.397 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.138 4.138 16 C -0.210 4.210 17 C 0.055 3.945 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.187 4.187 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.910 -4.641 -24.330 25.075 hybrid contribution -0.598 1.344 0.642 1.605 sum 3.312 -3.298 -23.688 24.144 Atomic orbital electron populations 1.22344 0.92392 1.04589 1.04082 1.22225 0.95915 0.97073 0.84179 0.88337 1.86216 1.80900 1.36928 1.15702 1.19107 0.95179 0.90380 0.86734 1.20496 1.03578 1.01570 0.91275 1.20989 0.97806 0.94019 0.97068 1.21085 1.02205 0.95880 0.98775 1.20976 0.97059 0.99460 0.92263 1.21348 1.07114 0.94333 1.00341 1.20015 0.80276 0.85608 0.84151 1.90739 1.39492 1.23048 1.86420 1.45939 1.57779 1.28015 1.05363 1.21533 0.99256 0.95787 0.82493 1.22718 1.00564 0.97930 0.92626 1.23923 0.97267 0.98080 1.01735 1.21093 0.92410 0.90042 0.90970 1.42180 1.03303 1.42546 1.46394 1.19342 0.92773 1.11222 1.13970 0.90918 1.24768 0.95210 1.00395 1.00552 1.69669 0.97556 1.44712 1.46103 0.86097 0.77387 0.81422 0.81153 1.20483 1.21838 1.21818 1.23442 1.01279 0.98699 0.95296 0.90566 0.89906 0.90554 0.85049 0.85341 0.85922 0.85697 0.85167 0.76239 0.91599 0.91383 0.88823 0.91379 0.91483 0.91907 0.78123 0.93481 0.91253 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.13 37.16 0.34 -1.07 16 2 C 0.07 0.67 2.64 -27.88 -0.07 0.60 16 3 H 0.10 0.80 6.31 -51.93 -0.33 0.48 16 4 O -0.29 -3.56 9.34 -39.29 -0.37 -3.92 16 5 C 0.13 1.41 6.60 -39.22 -0.26 1.15 16 6 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 8 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 9 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 10 C -0.21 -1.88 8.24 -39.43 -0.33 -2.21 16 11 C 0.52 6.71 7.18 -10.99 -0.08 6.63 16 12 O -0.52 -9.05 16.51 -14.31 -0.24 -9.28 16 13 N -0.72 -8.18 5.52 -60.29 -0.33 -8.51 16 14 C 0.13 1.69 5.50 -4.04 -0.02 1.66 16 15 C -0.12 -1.68 3.62 -89.81 -0.33 -2.01 16 16 C -0.17 -2.67 7.44 -25.83 -0.19 -2.86 16 17 C 0.17 3.15 4.57 -67.02 -0.31 2.84 16 18 N -0.71 -16.88 5.31 -52.54 -0.28 -17.16 16 19 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 23 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 28 H 0.08 0.53 6.91 -51.93 -0.36 0.17 16 29 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.94 5.43 -52.49 -0.29 0.65 16 36 H 0.40 3.73 8.26 -40.82 -0.34 3.39 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 43 H 0.38 9.72 7.90 -40.82 -0.32 9.40 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -32.81 382.29 -10.07 -42.89 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.05 Total: 10.33 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.27 Total: -10.33 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.11 Total: -52.25 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.60 Total: -13.21 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.81 -10.07 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100938318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.462 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds