Wall clock time and date at job start Tue Mar 31 2020 12:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47443 * 2 1 4 4 O 1.42903 * 109.47449 * 239.99826 * 2 1 3 5 5 C 1.35900 * 116.99768 * 84.94925 * 4 2 1 6 6 C 1.38734 * 120.05170 * 174.27940 * 5 4 2 7 7 C 1.38149 * 119.94107 * 179.74963 * 6 5 4 8 8 C 1.38268 * 120.05439 * 0.49906 * 7 6 5 9 9 C 1.38265 * 120.11166 * 359.77873 * 8 7 6 10 10 C 1.38151 * 120.05832 * 359.96853 * 9 8 7 11 11 C 1.50703 * 109.47014 * 119.99996 * 2 1 3 12 12 O 1.21285 * 120.00199 * 114.99526 * 11 2 1 13 13 N 1.34773 * 120.00185 * 295.00131 * 11 2 1 14 14 C 1.46497 * 120.00354 * 179.97438 * 13 11 2 15 15 C 1.53005 * 109.47165 * 179.97438 * 14 13 11 16 16 C 1.53774 * 113.61268 * 274.13688 * 15 14 13 17 17 C 1.53963 * 87.02031 * 220.04962 * 16 15 14 18 18 N 1.46498 * 113.53408 * 270.81638 * 17 16 15 19 19 C 1.36943 * 119.99789 * 252.48986 * 18 17 16 20 20 H 1.08004 * 119.99711 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99909 * 180.02562 * 19 18 17 22 22 N 1.31615 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47378 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47433 * 119.99926 * 23 21 19 26 26 H 1.48504 * 109.47274 * 240.00096 * 23 21 19 27 27 C 1.53780 * 113.61121 * 176.52839 * 15 14 13 28 28 H 1.09003 * 109.47131 * 60.00072 * 1 2 3 29 29 H 1.08993 * 109.47224 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02897 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.97207 * 180.23135 * 7 6 5 33 33 H 1.08002 * 119.94357 * 179.74409 * 8 7 6 34 34 H 1.08007 * 119.97244 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.02689 * 179.97438 * 10 9 8 36 36 H 0.97004 * 120.00000 * 0.02562 * 13 11 2 37 37 H 1.08998 * 109.47305 * 299.99704 * 14 13 11 38 38 H 1.09002 * 109.46800 * 60.00143 * 14 13 11 39 39 H 1.08994 * 112.84725 * 45.33563 * 15 14 13 40 40 H 1.09004 * 113.62021 * 334.56511 * 16 15 14 41 41 H 1.08994 * 113.61564 * 105.47453 * 16 15 14 42 42 H 1.08994 * 113.74347 * 139.94414 * 17 16 15 43 43 H 0.97001 * 120.00672 * 72.49533 * 18 17 16 44 44 H 0.97005 * 119.99761 * 179.97438 * 22 21 19 45 45 H 1.08996 * 113.61671 * 254.53063 * 27 15 14 46 46 H 1.08999 * 113.61660 * 25.43680 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1116 0.0623 -2.3044 6 6 2.6777 -0.4943 -3.4421 7 6 2.7788 0.2542 -4.5988 8 6 2.3257 1.5604 -4.6202 9 6 1.7663 2.1192 -3.4859 10 6 1.6582 1.3732 -2.3282 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7468 1.1216 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6482 15 6 1.8755 -0.0945 4.8943 16 6 2.8688 1.0189 5.2663 17 6 2.6471 0.6152 6.7355 18 7 1.5362 1.3239 7.3756 19 6 1.7896 2.2929 8.3095 20 1 2.8085 2.5348 8.5737 21 6 0.7370 2.9640 8.9165 22 7 -0.5046 2.6688 8.5948 23 14 1.0828 4.2863 10.1899 24 1 2.5499 4.4267 10.3718 25 1 0.5149 5.5785 9.7285 26 1 0.4586 3.9044 11.4821 27 6 2.2679 -0.7808 6.2133 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.0358 -1.5130 -3.4246 32 1 3.2160 -0.1797 -5.4858 33 1 2.4093 2.1453 -5.5242 34 1 1.4135 3.1399 -3.5050 35 1 1.2216 1.8103 -1.4424 36 1 1.2951 0.6344 2.5392 37 1 1.8446 -1.8835 3.6940 38 1 3.3660 -0.9637 3.6048 39 1 0.8377 0.2374 4.8667 40 1 3.8831 0.8358 4.9116 41 1 2.5107 2.0206 5.0291 42 1 3.5571 0.6247 7.3353 43 1 0.6211 1.1068 7.1381 44 1 -1.2401 3.1376 9.0193 45 1 1.4255 -1.2298 6.7394 46 1 3.1176 -1.4568 6.1179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100938318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:15 Heat of formation + Delta-G solvation = -37.328901 kcal Electronic energy + Delta-G solvation = -25532.973514 eV Core-core repulsion = 21809.009180 eV Total energy + Delta-G solvation = -3723.964334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71023 -40.62917 -39.81731 -38.26151 -36.07215 -35.05464 -33.32887 -32.03590 -31.68324 -30.59744 -28.72974 -26.43354 -26.00149 -25.37458 -23.81342 -23.30709 -22.78717 -21.39758 -19.85155 -19.44654 -19.33307 -18.40949 -17.36263 -16.90260 -16.80008 -16.67809 -16.39894 -16.05558 -15.76088 -15.57360 -15.32133 -14.90120 -14.74029 -14.61484 -14.38066 -14.11594 -13.78862 -13.58768 -13.33403 -13.27697 -12.95338 -12.92381 -12.86726 -12.66042 -12.45259 -12.12983 -12.10387 -12.05094 -11.76810 -11.54220 -11.47362 -11.03931 -10.89720 -10.73667 -10.16262 -9.94822 -9.19838 -8.99074 -7.95295 -5.23118 0.38944 0.47084 1.42119 1.48330 1.49135 1.54651 1.58786 2.54966 2.55976 2.84403 3.37376 3.45567 3.67275 3.72090 3.78530 3.83092 3.89310 3.93594 4.00096 4.15134 4.28875 4.32723 4.39534 4.40223 4.51236 4.59621 4.63103 4.72105 4.74527 4.76657 4.93824 4.99830 5.06113 5.09499 5.11672 5.24060 5.34808 5.35463 5.46315 5.48355 5.54205 5.60881 5.66660 5.83320 6.28783 6.31547 6.47237 7.07834 7.34038 8.11165 8.33480 9.28009 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002090 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.327234 B =13396.583783 C =14201.210727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 H 0.121 0.879 4 O -0.314 6.314 5 C 0.105 3.895 6 C -0.173 4.173 7 C -0.083 4.083 8 C -0.162 4.162 9 C -0.084 4.084 10 C -0.218 4.218 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.707 5.707 14 C 0.140 3.860 15 C -0.100 4.100 16 C -0.153 4.153 17 C 0.143 3.857 18 N -0.719 5.719 19 C -0.240 4.240 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.295 1.295 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.058 0.942 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -2.605 -25.845 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.139 0.861 4 O -0.228 6.228 5 C 0.061 3.939 6 C -0.191 4.191 7 C -0.101 4.101 8 C -0.180 4.180 9 C -0.102 4.102 10 C -0.236 4.236 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.360 5.360 14 C 0.017 3.983 15 C -0.119 4.119 16 C -0.194 4.194 17 C 0.033 3.967 18 N -0.357 5.357 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.223 1.223 27 C -0.175 4.175 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.538 -3.436 -25.728 26.350 hybrid contribution -0.700 0.939 1.001 1.541 sum 3.838 -2.497 -24.727 25.148 Atomic orbital electron populations 1.22340 0.90671 1.04178 1.05627 1.22310 0.97061 0.97300 0.82433 0.86115 1.86167 1.81643 1.38333 1.16654 1.19369 0.96731 0.91366 0.86462 1.20703 1.04450 1.01871 0.92126 1.21294 0.97392 0.94290 0.97082 1.21468 1.01069 0.95784 0.99687 1.21347 0.96505 1.00484 0.91863 1.21555 1.06945 0.93632 1.01487 1.20550 0.79296 0.85005 0.85144 1.90713 1.41839 1.25284 1.87142 1.45829 1.57258 1.28189 1.04707 1.21353 0.99213 0.95506 0.82250 1.22492 0.99720 0.96923 0.92778 1.23737 0.98889 0.97788 0.98950 1.21423 0.90960 0.92120 0.92200 1.42297 1.04094 1.42718 1.46610 1.19699 0.92796 1.11063 1.13666 0.90612 1.25524 0.95189 1.02990 1.03033 1.69808 0.98222 1.46166 1.47647 0.85105 0.77694 0.78681 0.78472 1.19140 1.22057 1.22285 1.23350 1.01849 0.97085 0.95196 0.89253 0.88056 0.91951 0.85663 0.83139 0.83426 0.83301 0.83725 0.74763 0.91744 0.91402 0.89566 0.89186 0.92981 0.92327 0.79276 0.94042 0.92300 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.13 71.98 0.66 -1.83 16 2 C 0.07 1.33 2.64 29.85 0.08 1.41 16 3 H 0.12 1.75 6.31 -2.39 -0.02 1.74 16 4 O -0.31 -7.93 9.34 -73.44 -0.69 -8.61 16 5 C 0.11 2.23 6.60 22.51 0.15 2.38 16 6 C -0.17 -3.37 9.99 22.37 0.22 -3.15 16 7 C -0.08 -1.18 10.04 22.26 0.22 -0.95 16 8 C -0.16 -2.00 10.04 22.28 0.22 -1.78 16 9 C -0.08 -1.09 10.04 22.26 0.22 -0.87 16 10 C -0.22 -3.49 8.24 22.37 0.18 -3.31 16 11 C 0.51 13.07 7.18 87.66 0.63 13.70 16 12 O -0.57 -20.00 16.51 15.94 0.26 -19.73 16 13 N -0.71 -15.07 5.52 -463.05 -2.55 -17.63 16 14 C 0.14 3.35 5.50 86.38 0.48 3.82 16 15 C -0.10 -2.67 3.62 -10.27 -0.04 -2.71 16 16 C -0.15 -4.59 7.44 31.18 0.23 -4.36 16 17 C 0.14 5.25 4.57 45.58 0.21 5.46 16 18 N -0.72 -34.46 5.31 -320.15 -1.70 -36.16 16 19 C -0.24 -12.92 9.97 84.03 0.84 -12.08 16 20 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 22 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 23 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 C -0.14 -3.97 7.39 31.12 0.23 -3.74 16 28 H 0.09 1.08 6.91 -2.39 -0.02 1.06 16 29 H 0.10 1.07 7.92 -2.39 -0.02 1.05 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.15 1.74 5.43 -2.91 -0.02 1.73 16 36 H 0.42 6.85 8.26 -92.71 -0.77 6.09 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.33 7.92 -2.38 -0.02 2.32 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 43 H 0.37 19.20 7.90 -92.71 -0.73 18.47 16 44 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 2.52 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -72.07 382.29 2.13 -69.94 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.50 Total: 34.00 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.00 Total: -11.71 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -3.97 Total: -110.96 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.42 Total: -28.35 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.07 2.13 -69.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100938318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds