Wall clock time and date at job start Tue Mar 31 2020 12:20:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08995 * 109.47064 * 2 1
4 4 O 1.42901 * 109.47125 * 120.00187 * 2 1 3
5 5 C 1.35905 * 116.99818 * 275.03570 * 4 2 1
6 6 C 1.38736 * 120.05364 * 5.44455 * 5 4 2
7 7 C 1.38139 * 119.94317 * 179.97438 * 6 5 4
8 8 C 1.38274 * 120.05588 * 359.97438 * 7 6 5
9 9 C 1.38261 * 120.10755 * 0.28063 * 8 7 6
10 10 C 1.38149 * 120.05845 * 359.44486 * 9 8 7
11 11 C 1.50707 * 109.46885 * 239.99952 * 2 1 3
12 12 O 1.21277 * 119.99659 * 244.99687 * 11 2 1
13 13 N 1.34775 * 120.00194 * 65.00172 * 11 2 1
14 14 C 1.46495 * 120.00193 * 179.97438 * 13 11 2
15 15 C 1.52994 * 109.47428 * 179.97438 * 14 13 11
16 16 C 1.53782 * 113.61523 * 274.13976 * 15 14 13
17 17 C 1.53951 * 87.01963 * 220.04418 * 16 15 14
18 18 N 1.46496 * 113.53911 * 270.81101 * 17 16 15
19 19 C 1.36942 * 119.99694 * 252.49292 * 18 17 16
20 20 H 1.07998 * 120.00333 * 0.02562 * 19 18 17
21 21 C 1.38818 * 119.99682 * 179.97438 * 19 18 17
22 22 N 1.31613 * 119.99847 * 0.02562 * 21 19 18
23 23 Si 1.86804 * 119.99771 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.46852 * 60.00218 * 23 21 19
25 25 H 1.48496 * 109.46676 * 180.02562 * 23 21 19
26 26 H 1.48504 * 109.46955 * 300.00391 * 23 21 19
27 27 C 1.53779 * 113.61841 * 176.52977 * 15 14 13
28 28 H 1.08998 * 109.47113 * 300.00010 * 1 2 3
29 29 H 1.08993 * 109.47301 * 60.00207 * 1 2 3
30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3
31 31 H 1.08004 * 120.02792 * 359.94658 * 6 5 4
32 32 H 1.07995 * 119.97423 * 179.97438 * 7 6 5
33 33 H 1.07993 * 119.94187 * 180.02562 * 8 7 6
34 34 H 1.08007 * 119.96860 * 179.70258 * 9 8 7
35 35 H 1.08002 * 120.02934 * 180.27665 * 10 9 8
36 36 H 0.96997 * 119.99688 * 359.97438 * 13 11 2
37 37 H 1.08998 * 109.46932 * 300.00005 * 14 13 11
38 38 H 1.09004 * 109.47137 * 60.00043 * 14 13 11
39 39 H 1.09003 * 112.84853 * 45.32934 * 15 14 13
40 40 H 1.09002 * 113.61360 * 334.56302 * 16 15 14
41 41 H 1.08999 * 113.61579 * 105.46766 * 16 15 14
42 42 H 1.09006 * 113.74010 * 139.93869 * 17 16 15
43 43 H 0.96994 * 120.00377 * 72.49103 * 18 17 16
44 44 H 0.96999 * 119.99769 * 179.97438 * 22 21 19
45 45 H 1.09001 * 113.61604 * 254.53299 * 27 15 14
46 46 H 1.09006 * 113.61153 * 25.43140 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 2.1118 0.0624 2.3043
6 6 1.6588 1.3735 2.3281
7 6 1.7666 2.1194 3.4858
8 6 2.3250 1.5602 4.6204
9 6 2.7820 0.2555 4.5977
10 6 2.6713 -0.4965 3.4441
11 6 2.0323 -0.7105 -1.2305
12 8 2.6530 -1.7467 -1.1215
13 7 1.7919 -0.1943 -2.4521
14 6 2.2807 -0.8846 -3.6482
15 6 1.8753 -0.0949 -4.8943
16 6 0.4662 -0.4350 -5.4078
17 6 1.0513 -0.3506 -6.8293
18 7 0.9914 0.9941 -7.4077
19 6 0.0989 1.2695 -8.4091
20 1 -0.5612 0.4956 -8.7722
21 6 0.0418 2.5438 -8.9568
22 7 0.8459 3.4870 -8.5141
23 14 -1.1763 2.9197 -10.3223
24 1 -2.5575 2.6768 -9.8342
25 1 -1.0380 4.3405 -10.7316
26 1 -0.9011 2.0405 -11.4870
27 6 2.4143 -0.6923 -6.2047
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 1.2225 1.8107 1.4420
32 1 1.4144 3.1402 3.5047
33 1 2.4080 2.1449 5.5246
34 1 3.2222 -0.1775 5.4839
35 1 3.0244 -1.5170 3.4282
36 1 1.2953 0.6343 -2.5392
37 1 3.3670 -0.9624 -3.6043
38 1 1.8464 -1.8833 -3.6942
39 1 2.0572 0.9753 -4.7949
40 1 0.1307 -1.4348 -5.1324
41 1 -0.2745 0.3353 -5.1931
42 1 0.6756 -1.1191 -7.5049
43 1 1.5840 1.6892 -7.0815
44 1 0.8062 4.3773 -8.8970
45 1 3.2441 -0.1295 -6.6324
46 1 2.6124 -1.7627 -6.1476
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001100938319.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:20
Heat of formation + Delta-G solvation = -17.233415 kcal
Electronic energy + Delta-G solvation = -25528.573577 eV
Core-core repulsion = 21805.480649 eV
Total energy + Delta-G solvation = -3723.092928 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.88434 -39.63856 -38.57558 -37.49837 -34.77600 -33.36017 -32.47244 -31.13755
-30.20066 -29.89856 -27.47768 -25.12942 -24.92702 -23.74587 -23.08947 -22.42909
-21.66847 -20.43826 -18.73005 -18.47774 -17.69135 -17.15115 -16.52657 -16.06722
-15.96542 -15.52225 -15.09099 -14.89831 -14.76768 -14.35227 -14.10268 -13.81142
-13.69630 -13.48703 -13.32047 -12.92409 -12.85195 -12.71973 -12.30400 -12.15629
-11.96889 -11.89454 -11.48346 -11.36992 -11.12731 -11.08410 -10.86519 -10.53960
-10.24578 -10.14219 -9.81591 -9.73205 -9.51841 -9.33500 -9.10416 -8.92336
-8.51999 -7.04743 -5.84927 -3.14087 0.99856 1.11482 2.38025 2.42575
3.38766 3.39617 3.44164 3.44907 3.46417 4.26894 4.43330 4.51982
4.52758 4.54547 4.59487 4.80326 4.98810 4.99808 5.03661 5.05746
5.17400 5.20606 5.26973 5.34756 5.40947 5.56208 5.64877 5.66822
5.69732 5.81496 5.89603 5.97773 6.05171 6.07067 6.16741 6.20275
6.29738 6.32700 6.42469 6.53743 6.68993 6.84340 6.99135 7.05357
7.36478 7.64670 8.05063 8.34280 9.44953 10.02191 10.36373 11.37371
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.021508 B = 0.002065 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.549291 B =13557.763430 C =14388.954104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.066 3.934
3 H 0.099 0.901
4 O -0.285 6.285
5 C 0.132 3.868
6 C -0.213 4.213
7 C -0.079 4.079
8 C -0.161 4.161
9 C -0.081 4.081
10 C -0.151 4.151
11 C 0.516 3.484
12 O -0.522 6.522
13 N -0.718 5.718
14 C 0.132 3.868
15 C -0.120 4.120
16 C -0.169 4.169
17 C 0.167 3.833
18 N -0.705 5.705
19 C -0.244 4.244
20 H 0.072 0.928
21 C -0.012 4.012
22 N -0.933 5.933
23 Si 0.909 3.091
24 H -0.285 1.285
25 H -0.291 1.291
26 H -0.285 1.285
27 C -0.148 4.148
28 H 0.075 0.925
29 H 0.082 0.918
30 H 0.075 0.925
31 H 0.131 0.869
32 H 0.125 0.875
33 H 0.123 0.877
34 H 0.129 0.871
35 H 0.132 0.868
36 H 0.403 0.597
37 H 0.065 0.935
38 H 0.068 0.932
39 H 0.093 0.907
40 H 0.068 0.932
41 H 0.066 0.934
42 H 0.063 0.937
43 H 0.385 0.615
44 H 0.256 0.744
45 H 0.069 0.931
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.768 -4.695 24.346 24.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.006 3.994
3 H 0.116 0.884
4 O -0.197 6.197
5 C 0.086 3.914
6 C -0.231 4.231
7 C -0.098 4.098
8 C -0.180 4.180
9 C -0.099 4.099
10 C -0.169 4.169
11 C 0.299 3.701
12 O -0.397 6.397
13 N -0.371 5.371
14 C 0.009 3.991
15 C -0.139 4.139
16 C -0.210 4.210
17 C 0.055 3.945
18 N -0.344 5.344
19 C -0.375 4.375
20 H 0.090 0.910
21 C -0.209 4.209
22 N -0.581 5.581
23 Si 0.740 3.260
24 H -0.212 1.212
25 H -0.217 1.217
26 H -0.212 1.212
27 C -0.187 4.187
28 H 0.094 0.906
29 H 0.101 0.899
30 H 0.094 0.906
31 H 0.148 0.852
32 H 0.143 0.857
33 H 0.141 0.859
34 H 0.147 0.853
35 H 0.150 0.850
36 H 0.238 0.762
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.112 0.888
40 H 0.086 0.914
41 H 0.085 0.915
42 H 0.081 0.919
43 H 0.219 0.781
44 H 0.066 0.934
45 H 0.087 0.913
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 2.144 -5.634 24.201 24.940
hybrid contribution -0.785 1.214 -0.657 1.588
sum 1.359 -4.420 23.544 23.994
Atomic orbital electron populations
1.22344 0.92372 1.04600 1.04081 1.22226 0.95930 0.97055 0.84176
0.88353 1.86217 1.80892 1.36933 1.15706 1.19107 0.95204 0.90364
0.86718 1.21348 1.07090 0.94357 1.00348 1.20974 0.97078 0.99450
0.92252 1.21084 1.02177 0.95929 0.98762 1.20989 0.97768 0.94012
0.97109 1.20492 1.03669 1.01488 0.91279 1.20014 0.80267 0.85618
0.84151 1.90737 1.39497 1.23039 1.86421 1.45937 1.57741 1.28067
1.05350 1.21530 0.99080 0.95948 0.82508 1.22719 0.98894 0.99869
0.92372 1.23921 0.95299 1.00357 1.01387 1.21091 0.92664 0.89220
0.91544 1.42161 1.44061 1.06225 1.41948 1.19248 1.12378 0.95220
1.10616 0.91030 1.24767 0.99724 0.96128 1.00235 1.69645 1.40563
1.02764 1.45099 0.86240 0.80786 0.77056 0.81931 1.21212 1.21678
1.21179 1.23445 0.99911 1.00143 0.95227 0.90578 0.89885 0.90556
0.85167 0.85697 0.85922 0.85340 0.85049 0.76240 0.91635 0.91354
0.88842 0.91374 0.91482 0.91914 0.78122 0.93373 0.91265 0.90413
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.42 9.13 37.16 0.34 -1.08 16
2 C 0.07 0.67 2.64 -27.88 -0.07 0.60 16
3 H 0.10 0.80 6.31 -51.93 -0.33 0.47 16
4 O -0.29 -3.56 9.34 -39.30 -0.37 -3.92 16
5 C 0.13 1.41 6.60 -39.22 -0.26 1.15 16
6 C -0.21 -1.88 8.24 -39.43 -0.33 -2.21 16
7 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16
8 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16
9 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16
10 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16
11 C 0.52 6.71 7.18 -10.98 -0.08 6.63 16
12 O -0.52 -9.05 16.51 -14.30 -0.24 -9.28 16
13 N -0.72 -8.19 5.52 -60.30 -0.33 -8.52 16
14 C 0.13 1.69 5.50 -4.05 -0.02 1.67 16
15 C -0.12 -1.69 3.62 -89.81 -0.33 -2.01 16
16 C -0.17 -2.65 7.44 -25.83 -0.19 -2.84 16
17 C 0.17 3.14 4.57 -67.03 -0.31 2.84 16
18 N -0.71 -16.88 5.31 -52.55 -0.28 -17.16 16
19 C -0.24 -6.55 9.97 -15.05 -0.15 -6.70 16
20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
22 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16
23 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16
24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
27 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16
28 H 0.08 0.53 6.91 -51.93 -0.36 0.17 16
29 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16
30 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16
31 H 0.13 0.93 5.43 -52.48 -0.29 0.65 16
32 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16
33 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16
34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16
35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16
36 H 0.40 3.74 8.26 -40.82 -0.34 3.40 16
37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16
39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
40 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16
41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
42 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16
43 H 0.38 9.73 7.90 -40.82 -0.32 9.41 16
44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
46 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16
LS Contribution 382.29 15.07 5.76 5.76
Total: -1.00 -32.75 382.29 -10.07 -42.83
By element:
Atomic # 1 Polarization: 17.49 SS G_CDS: -7.05 Total: 10.44 kcal
Atomic # 6 Polarization: -7.08 SS G_CDS: -3.27 Total: -10.35 kcal
Atomic # 7 Polarization: -52.38 SS G_CDS: 0.11 Total: -52.27 kcal
Atomic # 8 Polarization: -12.61 SS G_CDS: -0.60 Total: -13.21 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -32.75 -10.07 -42.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100938319.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.596 kcal
(2) G-P(sol) polarization free energy of solvation -32.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds