Wall clock time and date at job start Tue Mar 31 2020 12:20:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08995 * 109.47064 * 2 1
4 4 O 1.42901 * 109.47125 * 120.00187 * 2 1 3
5 5 C 1.35905 * 116.99818 * 275.03570 * 4 2 1
6 6 C 1.38736 * 120.05364 * 5.44455 * 5 4 2
7 7 C 1.38139 * 119.94317 * 179.97438 * 6 5 4
8 8 C 1.38274 * 120.05588 * 359.97438 * 7 6 5
9 9 C 1.38261 * 120.10755 * 0.28063 * 8 7 6
10 10 C 1.38149 * 120.05845 * 359.44486 * 9 8 7
11 11 C 1.50707 * 109.46885 * 239.99952 * 2 1 3
12 12 O 1.21277 * 119.99659 * 244.99687 * 11 2 1
13 13 N 1.34775 * 120.00194 * 65.00172 * 11 2 1
14 14 C 1.46495 * 120.00193 * 179.97438 * 13 11 2
15 15 C 1.52994 * 109.47428 * 179.97438 * 14 13 11
16 16 C 1.53782 * 113.61523 * 274.13976 * 15 14 13
17 17 C 1.53951 * 87.01963 * 220.04418 * 16 15 14
18 18 N 1.46496 * 113.53911 * 270.81101 * 17 16 15
19 19 C 1.36942 * 119.99694 * 252.49292 * 18 17 16
20 20 H 1.07998 * 120.00333 * 0.02562 * 19 18 17
21 21 C 1.38818 * 119.99682 * 179.97438 * 19 18 17
22 22 N 1.31613 * 119.99847 * 0.02562 * 21 19 18
23 23 Si 1.86804 * 119.99771 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.46852 * 60.00218 * 23 21 19
25 25 H 1.48496 * 109.46676 * 180.02562 * 23 21 19
26 26 H 1.48504 * 109.46955 * 300.00391 * 23 21 19
27 27 C 1.53779 * 113.61841 * 176.52977 * 15 14 13
28 28 H 1.08998 * 109.47113 * 300.00010 * 1 2 3
29 29 H 1.08993 * 109.47301 * 60.00207 * 1 2 3
30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3
31 31 H 1.08004 * 120.02792 * 359.94658 * 6 5 4
32 32 H 1.07995 * 119.97423 * 179.97438 * 7 6 5
33 33 H 1.07993 * 119.94187 * 180.02562 * 8 7 6
34 34 H 1.08007 * 119.96860 * 179.70258 * 9 8 7
35 35 H 1.08002 * 120.02934 * 180.27665 * 10 9 8
36 36 H 0.96997 * 119.99688 * 359.97438 * 13 11 2
37 37 H 1.08998 * 109.46932 * 300.00005 * 14 13 11
38 38 H 1.09004 * 109.47137 * 60.00043 * 14 13 11
39 39 H 1.09003 * 112.84853 * 45.32934 * 15 14 13
40 40 H 1.09002 * 113.61360 * 334.56302 * 16 15 14
41 41 H 1.08999 * 113.61579 * 105.46766 * 16 15 14
42 42 H 1.09006 * 113.74010 * 139.93869 * 17 16 15
43 43 H 0.96994 * 120.00377 * 72.49103 * 18 17 16
44 44 H 0.96999 * 119.99769 * 179.97438 * 22 21 19
45 45 H 1.09001 * 113.61604 * 254.53299 * 27 15 14
46 46 H 1.09006 * 113.61153 * 25.43140 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 2.1118 0.0624 2.3043
6 6 1.6588 1.3735 2.3281
7 6 1.7666 2.1194 3.4858
8 6 2.3250 1.5602 4.6204
9 6 2.7820 0.2555 4.5977
10 6 2.6713 -0.4965 3.4441
11 6 2.0323 -0.7105 -1.2305
12 8 2.6530 -1.7467 -1.1215
13 7 1.7919 -0.1943 -2.4521
14 6 2.2807 -0.8846 -3.6482
15 6 1.8753 -0.0949 -4.8943
16 6 0.4662 -0.4350 -5.4078
17 6 1.0513 -0.3506 -6.8293
18 7 0.9914 0.9941 -7.4077
19 6 0.0989 1.2695 -8.4091
20 1 -0.5612 0.4956 -8.7722
21 6 0.0418 2.5438 -8.9568
22 7 0.8459 3.4870 -8.5141
23 14 -1.1763 2.9197 -10.3223
24 1 -2.5575 2.6768 -9.8342
25 1 -1.0380 4.3405 -10.7316
26 1 -0.9011 2.0405 -11.4870
27 6 2.4143 -0.6923 -6.2047
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0278 -0.0005
31 1 1.2225 1.8107 1.4420
32 1 1.4144 3.1402 3.5047
33 1 2.4080 2.1449 5.5246
34 1 3.2222 -0.1775 5.4839
35 1 3.0244 -1.5170 3.4282
36 1 1.2953 0.6343 -2.5392
37 1 3.3670 -0.9624 -3.6043
38 1 1.8464 -1.8833 -3.6942
39 1 2.0572 0.9753 -4.7949
40 1 0.1307 -1.4348 -5.1324
41 1 -0.2745 0.3353 -5.1931
42 1 0.6756 -1.1191 -7.5049
43 1 1.5840 1.6892 -7.0815
44 1 0.8062 4.3773 -8.8970
45 1 3.2441 -0.1295 -6.6324
46 1 2.6124 -1.7627 -6.1476
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001100938319.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:19
Heat of formation + Delta-G solvation = -37.092962 kcal
Electronic energy + Delta-G solvation = -25529.434751 eV
Core-core repulsion = 21805.480649 eV
Total energy + Delta-G solvation = -3723.954103 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.71047 -40.62900 -39.81559 -38.26212 -36.07027 -35.05052 -33.32785 -32.03393
-31.68345 -30.59815 -28.72536 -26.43043 -25.99578 -25.37125 -23.81256 -23.30698
-22.78463 -21.40193 -19.83058 -19.44707 -19.33187 -18.42287 -17.36344 -16.95581
-16.73053 -16.68360 -16.35462 -16.08047 -15.72376 -15.64163 -15.31870 -14.96598
-14.66640 -14.55995 -14.39526 -14.10838 -13.84101 -13.56008 -13.33641 -13.27459
-12.92200 -12.91383 -12.86585 -12.62250 -12.45458 -12.19593 -12.10643 -12.07299
-11.76734 -11.53415 -11.46536 -11.03704 -10.88391 -10.72955 -10.16225 -9.94908
-9.19843 -8.98760 -7.94543 -5.22490 0.38923 0.47043 1.42115 1.48949
1.51011 1.54634 1.57133 2.54997 2.56579 2.84364 3.37710 3.45334
3.67493 3.72624 3.78817 3.83565 3.88920 3.93549 3.99975 4.15474
4.28870 4.33015 4.39406 4.40603 4.51228 4.59989 4.63317 4.72165
4.74967 4.76281 4.94209 5.00125 5.06464 5.09535 5.11733 5.24227
5.34963 5.35625 5.46290 5.48324 5.54384 5.60824 5.66924 5.83275
6.29117 6.31520 6.47228 7.07839 7.34417 8.11734 8.34041 9.28360
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.021508 B = 0.002065 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.549291 B =13557.763430 C =14388.954104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.068 3.932
3 H 0.121 0.879
4 O -0.314 6.314
5 C 0.105 3.895
6 C -0.218 4.218
7 C -0.084 4.084
8 C -0.162 4.162
9 C -0.083 4.083
10 C -0.173 4.173
11 C 0.514 3.486
12 O -0.571 6.571
13 N -0.707 5.707
14 C 0.140 3.860
15 C -0.101 4.101
16 C -0.152 4.152
17 C 0.143 3.857
18 N -0.719 5.719
19 C -0.243 4.243
20 H 0.076 0.924
21 C -0.075 4.075
22 N -0.968 5.968
23 Si 0.972 3.028
24 H -0.278 1.278
25 H -0.297 1.297
26 H -0.280 1.280
27 C -0.136 4.136
28 H 0.088 0.912
29 H 0.101 0.899
30 H 0.062 0.938
31 H 0.145 0.855
32 H 0.149 0.851
33 H 0.148 0.852
34 H 0.151 0.849
35 H 0.125 0.875
36 H 0.415 0.585
37 H 0.063 0.937
38 H 0.069 0.931
39 H 0.085 0.915
40 H 0.091 0.909
41 H 0.052 0.948
42 H 0.059 0.941
43 H 0.375 0.625
44 H 0.251 0.749
45 H 0.057 0.943
46 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.942 -4.345 25.639 26.021
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.009 3.991
3 H 0.139 0.861
4 O -0.228 6.228
5 C 0.061 3.939
6 C -0.236 4.236
7 C -0.102 4.102
8 C -0.180 4.180
9 C -0.101 4.101
10 C -0.192 4.192
11 C 0.300 3.700
12 O -0.450 6.450
13 N -0.360 5.360
14 C 0.017 3.983
15 C -0.119 4.119
16 C -0.192 4.192
17 C 0.033 3.967
18 N -0.357 5.357
19 C -0.375 4.375
20 H 0.094 0.906
21 C -0.267 4.267
22 N -0.618 5.618
23 Si 0.801 3.199
24 H -0.204 1.204
25 H -0.223 1.223
26 H -0.206 1.206
27 C -0.175 4.175
28 H 0.107 0.893
29 H 0.119 0.881
30 H 0.081 0.919
31 H 0.163 0.837
32 H 0.167 0.833
33 H 0.166 0.834
34 H 0.169 0.831
35 H 0.143 0.857
36 H 0.252 0.748
37 H 0.081 0.919
38 H 0.087 0.913
39 H 0.103 0.897
40 H 0.109 0.891
41 H 0.071 0.929
42 H 0.077 0.923
43 H 0.207 0.793
44 H 0.060 0.940
45 H 0.076 0.924
46 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 1.291 -5.311 25.507 26.086
hybrid contribution -0.499 1.037 -0.991 1.519
sum 0.792 -4.274 24.516 24.898
Atomic orbital electron populations
1.22336 0.90635 1.04191 1.05601 1.22312 0.97084 0.97287 0.82431
0.86140 1.86168 1.81639 1.38333 1.16655 1.19369 0.96762 0.91350
0.86445 1.21556 1.06921 0.93659 1.01493 1.21346 0.96525 1.00475
0.91856 1.21467 1.01040 0.95831 0.99674 1.21294 0.97360 0.94279
0.97126 1.20699 1.04541 1.01792 0.92123 1.20549 0.79283 0.85019
0.85142 1.90711 1.41828 1.25293 1.87140 1.45828 1.57218 1.28242
1.04698 1.21350 0.98975 0.95727 0.82264 1.22491 0.97441 0.99478
0.92537 1.23729 0.95656 1.01189 0.98666 1.21425 0.95653 0.86837
0.92819 1.42281 1.43562 1.07928 1.41945 1.19628 1.12106 0.95191
1.10540 0.90626 1.25531 1.01922 0.96293 1.02943 1.69793 1.42528
1.02822 1.46697 0.85239 0.78975 0.76317 0.79389 1.20383 1.22313
1.20600 1.23354 0.97496 1.01680 0.94983 0.89272 0.88074 0.91924
0.83723 0.83302 0.83426 0.83136 0.85656 0.74766 0.91874 0.91278
0.89676 0.89106 0.92939 0.92310 0.79303 0.94033 0.92371 0.87788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.47 9.13 71.98 0.66 -1.82 16
2 C 0.07 1.33 2.64 29.85 0.08 1.41 16
3 H 0.12 1.75 6.31 -2.39 -0.02 1.73 16
4 O -0.31 -7.93 9.34 -73.49 -0.69 -8.62 16
5 C 0.11 2.24 6.60 22.50 0.15 2.39 16
6 C -0.22 -3.50 8.24 22.37 0.18 -3.32 16
7 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16
8 C -0.16 -2.01 10.04 22.28 0.22 -1.78 16
9 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16
10 C -0.17 -3.38 9.99 22.36 0.22 -3.15 16
11 C 0.51 13.08 7.18 87.66 0.63 13.71 16
12 O -0.57 -20.00 16.51 15.97 0.26 -19.74 16
13 N -0.71 -15.09 5.52 -463.08 -2.55 -17.65 16
14 C 0.14 3.36 5.50 86.38 0.47 3.83 16
15 C -0.10 -2.68 3.62 -10.27 -0.04 -2.72 16
16 C -0.15 -4.52 7.44 31.18 0.23 -4.29 16
17 C 0.14 5.24 4.57 45.58 0.21 5.45 16
18 N -0.72 -34.50 5.31 -320.16 -1.70 -36.20 16
19 C -0.24 -13.06 9.97 84.03 0.84 -12.22 16
20 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16
21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16
22 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16
23 Si 0.97 44.99 29.55 68.60 2.03 47.02 16
24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16
25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16
26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
27 C -0.14 -3.99 7.39 31.12 0.23 -3.76 16
28 H 0.09 1.07 6.91 -2.39 -0.02 1.06 16
29 H 0.10 1.07 7.92 -2.39 -0.02 1.05 16
30 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
31 H 0.15 1.75 5.43 -2.91 -0.02 1.73 16
32 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16
33 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16
34 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16
35 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16
36 H 0.42 6.87 8.26 -92.71 -0.77 6.11 16
37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
38 H 0.07 1.70 7.87 -2.39 -0.02 1.68 16
39 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
40 H 0.09 2.33 7.92 -2.39 -0.02 2.31 16
41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
42 H 0.06 2.19 8.10 -2.38 -0.02 2.17 16
43 H 0.37 19.23 7.90 -92.71 -0.73 18.50 16
44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16
45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
46 H 0.10 2.53 8.10 -2.38 -0.02 2.51 16
Total: -1.00 -72.00 382.29 2.13 -69.86
By element:
Atomic # 1 Polarization: 34.85 SS G_CDS: -0.50 Total: 34.34 kcal
Atomic # 6 Polarization: -16.80 SS G_CDS: 5.00 Total: -11.80 kcal
Atomic # 7 Polarization: -107.10 SS G_CDS: -3.97 Total: -111.07 kcal
Atomic # 8 Polarization: -27.93 SS G_CDS: -0.42 Total: -28.36 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal
Total: -72.00 2.13 -69.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100938319.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.771 kcal
(2) G-P(sol) polarization free energy of solvation -71.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds