Wall clock time and date at job start Tue Mar 31 2020 11:59:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09001 * 109.46998 * 2 1
4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3
5 5 N 1.46505 * 109.47119 * 65.00050 * 4 2 1
6 6 C 1.34782 * 120.00001 * 179.97438 * 5 4 2
7 7 O 1.21346 * 119.99886 * 0.02562 * 6 5 4
8 8 C 1.49446 * 119.99728 * 179.97438 * 6 5 4
9 9 O 1.21351 * 120.00385 * 359.97438 * 8 6 5
10 10 N 1.34782 * 119.99728 * 179.97438 * 8 6 5
11 11 C 1.46496 * 119.99778 * 180.02562 * 10 8 6
12 12 C 1.53005 * 109.47116 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.47140 * 179.97438 * 12 11 10
14 14 C 1.50701 * 109.46901 * 179.97438 * 13 12 11
15 15 H 1.08001 * 120.00139 * 359.97438 * 14 13 12
16 16 C 1.37873 * 120.00138 * 180.02562 * 14 13 12
17 17 N 1.31519 * 119.99784 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 120.00415 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.46663 * 0.02562 * 18 16 14
20 20 H 1.48497 * 109.47036 * 119.99621 * 18 16 14
21 21 H 1.48495 * 109.47422 * 240.00203 * 18 16 14
22 22 C 1.50698 * 109.47184 * 119.99962 * 2 1 3
23 23 C 1.38245 * 119.99431 * 59.73158 * 22 2 1
24 24 C 1.38237 * 119.99269 * 179.78957 * 23 22 2
25 25 C 1.38234 * 120.00384 * 0.43420 * 24 23 22
26 26 C 1.38233 * 119.99643 * 359.81821 * 25 24 23
27 27 C 1.38228 * 120.00126 * 240.00037 * 22 2 1
28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3
30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3
31 31 H 1.09000 * 109.47278 * 184.99561 * 4 2 1
32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1
33 33 H 0.97002 * 120.00209 * 359.97438 * 5 4 2
34 34 H 0.96993 * 119.99847 * 359.97438 * 10 8 6
35 35 H 1.09000 * 109.47190 * 299.99601 * 11 10 8
36 36 H 1.09003 * 109.47621 * 59.99849 * 11 10 8
37 37 H 1.09000 * 109.46692 * 299.99816 * 12 11 10
38 38 H 1.08994 * 109.46972 * 59.99627 * 12 11 10
39 39 H 1.09000 * 109.46863 * 299.99889 * 13 12 11
40 40 H 1.08994 * 109.46895 * 59.99767 * 13 12 11
41 41 H 0.97002 * 119.99863 * 180.02562 * 17 16 14
42 42 H 1.07995 * 119.99936 * 359.97438 * 23 22 2
43 43 H 1.08000 * 119.99610 * 180.27818 * 24 23 22
44 44 H 1.07998 * 120.00233 * 179.83582 * 25 24 23
45 45 H 1.08009 * 119.99828 * 179.97438 * 26 25 24
46 46 H 1.07992 * 120.00101 * 359.97438 * 27 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7212 -1.2492
5 7 1.6525 0.0355 -2.4424
6 6 1.9965 -0.4128 -3.6660
7 8 2.6269 -1.4435 -3.7794
8 6 1.6007 0.3588 -4.8831
9 8 0.9691 1.3888 -4.7697
10 7 1.9451 -0.0893 -6.1067
11 6 1.5576 0.6674 -7.2997
12 6 2.0681 -0.0535 -8.5490
13 6 1.6628 0.7365 -9.7951
14 6 2.1662 0.0268 -11.0255
15 1 2.7203 -0.8952 -10.9284
16 6 1.9205 0.5551 -12.2751
17 7 1.2463 1.6781 -12.3932
18 14 2.5451 -0.3242 -13.8003
19 1 3.2686 -1.5575 -13.3991
20 1 1.3961 -0.6853 -14.6689
21 1 3.4667 0.5708 -14.5451
22 6 2.0324 -0.7104 1.2304
23 6 1.6938 -2.0323 1.4519
24 6 2.1582 -2.6852 2.5784
25 6 2.9537 -2.0137 3.4879
26 6 3.2879 -0.6904 3.2690
27 6 2.8271 -0.0386 2.1403
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 3.1264 -0.7993 -1.2057
32 1 1.6055 -1.7197 -1.2953
33 1 1.1483 0.8592 -2.3518
34 1 2.4503 -0.9124 -6.1972
35 1 0.4712 0.7448 -7.3439
36 1 1.9914 1.6663 -7.2533
37 1 3.1545 -0.1312 -8.5051
38 1 1.6339 -1.0521 -8.5952
39 1 0.5764 0.8139 -9.8387
40 1 2.0967 1.7353 -9.7490
41 1 1.0731 2.0496 -13.2724
42 1 1.0690 -2.5557 0.7434
43 1 1.8974 -3.7192 2.7492
44 1 3.3143 -2.5231 4.3693
45 1 3.9091 -0.1656 3.9798
46 1 3.0883 0.9952 1.9693
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001117416677.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:11
Heat of formation + Delta-G solvation = -72.411942 kcal
Electronic energy + Delta-G solvation = -24723.315537 eV
Core-core repulsion = 20997.829888 eV
Total energy + Delta-G solvation = -3725.485648 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.71771 -39.91137 -38.54201 -36.61228 -35.61276 -33.67880 -33.20997 -31.33567
-31.24964 -29.83579 -27.76368 -26.82798 -24.62337 -23.55538 -22.94721 -22.22799
-20.79283 -20.74614 -20.05517 -18.40148 -17.35549 -16.84215 -16.35220 -16.25552
-15.90160 -15.49164 -15.36339 -15.06100 -14.92595 -14.44939 -14.29342 -14.06058
-13.85947 -13.74117 -13.49615 -13.30194 -12.90486 -12.50617 -12.32325 -11.89343
-11.88193 -11.79626 -11.74052 -11.68443 -11.30272 -11.17557 -10.93396 -10.76717
-10.58380 -9.91132 -9.80541 -9.49814 -9.39411 -9.33125 -9.15415 -9.11367
-8.98717 -8.38695 -6.03281 -4.06216 0.90591 0.98676 1.41390 2.33219
3.22136 3.29930 3.35031 3.37566 3.41464 3.64313 4.18249 4.23874
4.43438 4.48346 4.53556 4.59045 4.63541 4.71869 4.86486 5.05570
5.10461 5.22356 5.32123 5.32863 5.39061 5.56203 5.58545 5.58891
5.63761 5.68596 5.74881 5.95039 6.06116 6.07477 6.11078 6.18685
6.26337 6.53564 6.57456 6.68417 6.89876 6.94696 7.39251 7.61440
7.71203 7.72817 7.95201 8.04263 8.36473 9.00531 9.58300 11.08001
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.039333 B = 0.001616 C = 0.001583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 711.702697 B =17321.290930 C =17681.781351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.064 4.064
3 H 0.089 0.911
4 C 0.126 3.874
5 N -0.704 5.704
6 C 0.508 3.492
7 O -0.520 6.520
8 C 0.500 3.500
9 O -0.527 6.527
10 N -0.691 5.691
11 C 0.113 3.887
12 C -0.123 4.123
13 C 0.024 3.976
14 C -0.522 4.522
15 H 0.057 0.943
16 C 0.057 3.943
17 N -0.894 5.894
18 Si 0.893 3.107
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 C -0.076 4.076
23 C -0.112 4.112
24 C -0.118 4.118
25 C -0.123 4.123
26 C -0.119 4.119
27 C -0.113 4.113
28 H 0.061 0.939
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.413 0.587
34 H 0.411 0.589
35 H 0.071 0.929
36 H 0.071 0.929
37 H 0.057 0.943
38 H 0.057 0.943
39 H 0.020 0.980
40 H 0.020 0.980
41 H 0.260 0.740
42 H 0.123 0.877
43 H 0.122 0.878
44 H 0.121 0.879
45 H 0.122 0.878
46 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.874 -5.019 33.449 33.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.083 4.083
3 H 0.107 0.893
4 C 0.002 3.998
5 N -0.358 5.358
6 C 0.289 3.711
7 O -0.395 6.395
8 C 0.280 3.720
9 O -0.404 6.404
10 N -0.343 5.343
11 C -0.009 4.009
12 C -0.161 4.161
13 C -0.014 4.014
14 C -0.561 4.561
15 H 0.075 0.925
16 C -0.145 4.145
17 N -0.533 5.533
18 Si 0.721 3.279
19 H -0.197 1.197
20 H -0.210 1.210
21 H -0.210 1.210
22 C -0.076 4.076
23 C -0.130 4.130
24 C -0.136 4.136
25 C -0.141 4.141
26 C -0.137 4.137
27 C -0.131 4.131
28 H 0.080 0.920
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.093 0.907
32 H 0.094 0.906
33 H 0.250 0.750
34 H 0.247 0.753
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.076 0.924
38 H 0.076 0.924
39 H 0.038 0.962
40 H 0.038 0.962
41 H 0.070 0.930
42 H 0.141 0.859
43 H 0.140 0.860
44 H 0.139 0.861
45 H 0.140 0.860
46 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 0.808 -4.904 33.290 33.659
hybrid contribution 0.343 -0.420 -0.849 1.007
sum 1.152 -5.324 32.441 32.895
Atomic orbital electron populations
1.21910 0.93335 1.02788 1.02506 1.20381 0.96922 0.99729 0.91273
0.89316 1.21524 1.00730 0.95331 0.82171 1.45760 1.56837 1.28225
1.04974 1.20341 0.80336 0.85567 0.84867 1.90766 1.38424 1.23594
1.86693 1.20003 0.81412 0.85766 0.84843 1.90758 1.39263 1.23774
1.86605 1.46073 1.54902 1.27902 1.05395 1.21850 1.00656 0.95637
0.82708 1.21931 1.00411 0.99807 0.93941 1.19041 0.97103 0.95292
0.89952 1.21244 1.35188 1.08609 0.91028 0.92505 1.25026 0.95208
0.95003 0.99214 1.69977 1.40227 1.19463 1.23616 0.86518 0.78607
0.79715 0.83051 1.19728 1.21002 1.20997 1.19628 0.97980 0.94315
0.95690 1.21057 0.99985 0.94226 0.97713 1.21172 0.97911 0.99982
0.94531 1.21188 0.98535 0.94898 0.99457 1.21160 0.99976 0.94992
0.97580 1.21092 0.97681 0.99978 0.94381 0.91999 0.91893 0.91792
0.90686 0.90646 0.75028 0.75296 0.91076 0.91075 0.92419 0.92418
0.96174 0.96179 0.92984 0.85900 0.85979 0.86132 0.86020 0.85945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.84 8.88 37.16 0.33 -0.51 16
2 C -0.06 -0.39 2.60 -91.77 -0.24 -0.63 16
3 H 0.09 0.48 7.88 -51.93 -0.41 0.07 16
4 C 0.13 1.01 4.81 -4.04 -0.02 0.99 16
5 N -0.70 -6.83 5.28 -60.73 -0.32 -7.15 16
6 C 0.51 6.58 7.89 -11.58 -0.09 6.49 16
7 O -0.52 -7.77 16.48 5.50 0.09 -7.68 16
8 C 0.50 7.39 7.89 -11.58 -0.09 7.30 16
9 O -0.53 -8.79 16.48 5.50 0.09 -8.70 16
10 N -0.69 -10.33 5.55 -60.73 -0.34 -10.66 16
11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16
12 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16
13 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16
14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16
15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16
16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16
18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16
19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
22 C -0.08 -0.51 4.78 -104.62 -0.50 -1.01 16
23 C -0.11 -0.75 8.76 -39.58 -0.35 -1.10 16
24 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16
25 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16
26 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16
27 C -0.11 -0.73 9.67 -39.59 -0.38 -1.12 16
28 H 0.06 0.35 7.37 -51.93 -0.38 -0.03 16
29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16
31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.08 0.63 7.59 -51.93 -0.39 0.24 16
33 H 0.41 3.54 7.13 -40.82 -0.29 3.25 16
34 H 0.41 5.63 7.94 -40.82 -0.32 5.30 16
35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
42 H 0.12 0.71 7.16 -52.49 -0.38 0.34 16
43 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16
44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16
45 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16
46 H 0.12 0.62 7.95 -52.49 -0.42 0.20 16
LS Contribution 389.38 15.07 5.87 5.87
Total: -1.00 -32.52 389.38 -9.30 -41.82
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -7.16 Total: 2.42 kcal
Atomic # 6 Polarization: -3.25 SS G_CDS: -3.25 Total: -6.49 kcal
Atomic # 7 Polarization: -43.77 SS G_CDS: 0.08 Total: -43.69 kcal
Atomic # 8 Polarization: -16.56 SS G_CDS: 0.18 Total: -16.38 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -32.52 -9.30 -41.82 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001117416677.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.589 kcal
(2) G-P(sol) polarization free energy of solvation -32.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.412 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds