Wall clock time and date at job start Tue Mar 31 2020 11:59:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09001 * 109.46998 * 2 1
4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3
5 5 N 1.46505 * 109.47119 * 65.00050 * 4 2 1
6 6 C 1.34782 * 120.00001 * 179.97438 * 5 4 2
7 7 O 1.21346 * 119.99886 * 0.02562 * 6 5 4
8 8 C 1.49446 * 119.99728 * 179.97438 * 6 5 4
9 9 O 1.21351 * 120.00385 * 359.97438 * 8 6 5
10 10 N 1.34782 * 119.99728 * 179.97438 * 8 6 5
11 11 C 1.46496 * 119.99778 * 180.02562 * 10 8 6
12 12 C 1.53005 * 109.47116 * 180.02562 * 11 10 8
13 13 C 1.53002 * 109.47140 * 179.97438 * 12 11 10
14 14 C 1.50701 * 109.46901 * 179.97438 * 13 12 11
15 15 H 1.08001 * 120.00139 * 359.97438 * 14 13 12
16 16 C 1.37873 * 120.00138 * 180.02562 * 14 13 12
17 17 N 1.31519 * 119.99784 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 120.00415 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.46663 * 0.02562 * 18 16 14
20 20 H 1.48497 * 109.47036 * 119.99621 * 18 16 14
21 21 H 1.48495 * 109.47422 * 240.00203 * 18 16 14
22 22 C 1.50698 * 109.47184 * 119.99962 * 2 1 3
23 23 C 1.38245 * 119.99431 * 59.73158 * 22 2 1
24 24 C 1.38237 * 119.99269 * 179.78957 * 23 22 2
25 25 C 1.38234 * 120.00384 * 0.43420 * 24 23 22
26 26 C 1.38233 * 119.99643 * 359.81821 * 25 24 23
27 27 C 1.38228 * 120.00126 * 240.00037 * 22 2 1
28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3
29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3
30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3
31 31 H 1.09000 * 109.47278 * 184.99561 * 4 2 1
32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1
33 33 H 0.97002 * 120.00209 * 359.97438 * 5 4 2
34 34 H 0.96993 * 119.99847 * 359.97438 * 10 8 6
35 35 H 1.09000 * 109.47190 * 299.99601 * 11 10 8
36 36 H 1.09003 * 109.47621 * 59.99849 * 11 10 8
37 37 H 1.09000 * 109.46692 * 299.99816 * 12 11 10
38 38 H 1.08994 * 109.46972 * 59.99627 * 12 11 10
39 39 H 1.09000 * 109.46863 * 299.99889 * 13 12 11
40 40 H 1.08994 * 109.46895 * 59.99767 * 13 12 11
41 41 H 0.97002 * 119.99863 * 180.02562 * 17 16 14
42 42 H 1.07995 * 119.99936 * 359.97438 * 23 22 2
43 43 H 1.08000 * 119.99610 * 180.27818 * 24 23 22
44 44 H 1.07998 * 120.00233 * 179.83582 * 25 24 23
45 45 H 1.08009 * 119.99828 * 179.97438 * 26 25 24
46 46 H 1.07992 * 120.00101 * 359.97438 * 27 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7212 -1.2492
5 7 1.6525 0.0355 -2.4424
6 6 1.9965 -0.4128 -3.6660
7 8 2.6269 -1.4435 -3.7794
8 6 1.6007 0.3588 -4.8831
9 8 0.9691 1.3888 -4.7697
10 7 1.9451 -0.0893 -6.1067
11 6 1.5576 0.6674 -7.2997
12 6 2.0681 -0.0535 -8.5490
13 6 1.6628 0.7365 -9.7951
14 6 2.1662 0.0268 -11.0255
15 1 2.7203 -0.8952 -10.9284
16 6 1.9205 0.5551 -12.2751
17 7 1.2463 1.6781 -12.3932
18 14 2.5451 -0.3242 -13.8003
19 1 3.2686 -1.5575 -13.3991
20 1 1.3961 -0.6853 -14.6689
21 1 3.4667 0.5708 -14.5451
22 6 2.0324 -0.7104 1.2304
23 6 1.6938 -2.0323 1.4519
24 6 2.1582 -2.6852 2.5784
25 6 2.9537 -2.0137 3.4879
26 6 3.2879 -0.6904 3.2690
27 6 2.8271 -0.0386 2.1403
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 3.1264 -0.7993 -1.2057
32 1 1.6055 -1.7197 -1.2953
33 1 1.1483 0.8592 -2.3518
34 1 2.4503 -0.9124 -6.1972
35 1 0.4712 0.7448 -7.3439
36 1 1.9914 1.6663 -7.2533
37 1 3.1545 -0.1312 -8.5051
38 1 1.6339 -1.0521 -8.5952
39 1 0.5764 0.8139 -9.8387
40 1 2.0967 1.7353 -9.7490
41 1 1.0731 2.0496 -13.2724
42 1 1.0690 -2.5557 0.7434
43 1 1.8974 -3.7192 2.7492
44 1 3.3143 -2.5231 4.3693
45 1 3.9091 -0.1656 3.9798
46 1 3.0883 0.9952 1.9693
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001117416677.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:10
Heat of formation + Delta-G solvation = -92.763393 kcal
Electronic energy + Delta-G solvation = -24724.198042 eV
Core-core repulsion = 20997.829888 eV
Total energy + Delta-G solvation = -3726.368154 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.77552 -40.48077 -39.62721 -37.44011 -36.97575 -35.27637 -34.25484 -33.03549
-31.77558 -30.34661 -29.10475 -27.98339 -25.89974 -24.50118 -23.73774 -23.13580
-22.36656 -21.52871 -21.01744 -19.51386 -18.51212 -18.08821 -17.59290 -17.27621
-16.77169 -16.56475 -16.37429 -16.20658 -15.97206 -15.78997 -15.24979 -15.01581
-14.63982 -14.47962 -14.28280 -14.15848 -13.92695 -13.77082 -13.55201 -13.45493
-12.97538 -12.88151 -12.78342 -12.54981 -12.39663 -12.37089 -12.21034 -11.77311
-11.70217 -11.64480 -11.55851 -11.21727 -10.73385 -10.55108 -10.38191 -10.27507
-9.79079 -9.62000 -8.19376 -6.30159 0.29457 0.43672 0.52891 1.27972
1.41902 1.42610 1.55472 2.09446 2.41784 2.60738 2.89572 3.14709
3.38962 3.66279 3.75698 3.96267 4.08535 4.15401 4.18614 4.19058
4.31920 4.37513 4.52937 4.60037 4.62714 4.67275 4.78188 4.86804
4.90249 4.91961 5.01612 5.10618 5.15261 5.18247 5.20044 5.23176
5.31068 5.52135 5.60877 5.66523 5.71185 5.71745 5.84854 5.86851
6.13995 6.23181 6.31552 6.68643 6.86950 6.89618 7.39325 8.92644
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.039333 B = 0.001616 C = 0.001583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 711.702697 B =17321.290930 C =17681.781351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.054 4.054
3 H 0.098 0.902
4 C 0.127 3.873
5 N -0.686 5.686
6 C 0.514 3.486
7 O -0.541 6.541
8 C 0.502 3.498
9 O -0.547 6.547
10 N -0.687 5.687
11 C 0.127 3.873
12 C -0.106 4.106
13 C 0.024 3.976
14 C -0.542 4.542
15 H 0.064 0.936
16 C -0.001 4.001
17 N -0.933 5.933
18 Si 0.965 3.035
19 H -0.261 1.261
20 H -0.280 1.280
21 H -0.280 1.280
22 C -0.085 4.085
23 C -0.124 4.124
24 C -0.129 4.129
25 C -0.131 4.131
26 C -0.128 4.128
27 C -0.124 4.124
28 H 0.060 0.940
29 H 0.067 0.933
30 H 0.063 0.937
31 H 0.069 0.931
32 H 0.075 0.925
33 H 0.420 0.580
34 H 0.419 0.581
35 H 0.065 0.935
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.067 0.933
39 H -0.003 1.003
40 H -0.003 1.003
41 H 0.263 0.737
42 H 0.128 0.872
43 H 0.135 0.865
44 H 0.137 0.863
45 H 0.138 0.862
46 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.537 -5.985 34.549 35.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.073 4.073
3 H 0.117 0.883
4 C 0.004 3.996
5 N -0.339 5.339
6 C 0.294 3.706
7 O -0.418 6.418
8 C 0.282 3.718
9 O -0.425 6.425
10 N -0.339 5.339
11 C 0.004 3.996
12 C -0.144 4.144
13 C -0.014 4.014
14 C -0.580 4.580
15 H 0.082 0.918
16 C -0.199 4.199
17 N -0.573 5.573
18 Si 0.790 3.210
19 H -0.185 1.185
20 H -0.205 1.205
21 H -0.205 1.205
22 C -0.085 4.085
23 C -0.142 4.142
24 C -0.147 4.147
25 C -0.149 4.149
26 C -0.146 4.146
27 C -0.142 4.142
28 H 0.079 0.921
29 H 0.086 0.914
30 H 0.082 0.918
31 H 0.088 0.912
32 H 0.093 0.907
33 H 0.258 0.742
34 H 0.256 0.744
35 H 0.083 0.917
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.085 0.915
39 H 0.015 0.985
40 H 0.015 0.985
41 H 0.072 0.928
42 H 0.145 0.855
43 H 0.153 0.847
44 H 0.155 0.845
45 H 0.156 0.844
46 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 1.472 -5.876 34.433 34.962
hybrid contribution 0.120 -0.096 -1.098 1.109
sum 1.592 -5.972 33.335 33.903
Atomic orbital electron populations
1.21902 0.92952 1.02837 1.02717 1.20303 0.97113 0.99865 0.90007
0.88333 1.21630 1.00447 0.95407 0.82083 1.45744 1.55527 1.28208
1.04449 1.19938 0.80486 0.85129 0.85039 1.90765 1.39761 1.24411
1.86887 1.20317 0.80715 0.85505 0.85230 1.90750 1.40116 1.24703
1.86940 1.45888 1.55042 1.28016 1.04941 1.21483 1.00103 0.95242
0.82766 1.21644 1.00984 0.99392 0.92402 1.18944 0.95381 0.94862
0.92180 1.21715 1.35106 1.08991 0.92217 0.91800 1.25969 0.95367
0.95742 1.02787 1.70105 1.41540 1.21091 1.24545 0.85395 0.78100
0.78779 0.78739 1.18493 1.20540 1.20537 1.19706 0.98379 0.94476
0.95958 1.21229 1.00344 0.94502 0.98146 1.21427 0.97981 1.00783
0.94537 1.21475 0.98341 0.95132 0.99992 1.21442 1.00078 0.95243
0.97856 1.21330 0.97632 1.00716 0.94528 0.92073 0.91382 0.91842
0.91238 0.90712 0.74170 0.74356 0.91660 0.91675 0.91487 0.91473
0.98459 0.98477 0.92808 0.85457 0.84715 0.84534 0.84441 0.84763
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 8.88 71.98 0.64 -0.83 16
2 C -0.05 -0.58 2.60 -11.54 -0.03 -0.61 16
3 H 0.10 0.88 7.88 -2.39 -0.02 0.86 16
4 C 0.13 1.89 4.81 86.38 0.42 2.31 16
5 N -0.69 -12.40 5.28 -464.41 -2.45 -14.85 16
6 C 0.51 12.74 7.89 87.27 0.69 13.43 16
7 O -0.54 -15.58 16.48 -3.23 -0.05 -15.64 16
8 C 0.50 14.37 7.89 87.27 0.69 15.06 16
9 O -0.55 -17.84 16.48 -3.25 -0.05 -17.89 16
10 N -0.69 -19.88 5.55 -464.40 -2.58 -22.46 16
11 C 0.13 4.30 5.67 86.38 0.49 4.79 16
12 C -0.11 -4.07 5.27 30.60 0.16 -3.91 16
13 C 0.02 1.23 4.97 29.85 0.15 1.38 16
14 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16
15 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16
16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16
17 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16
18 Si 0.97 43.85 29.54 68.60 2.03 45.87 16
19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16
20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
22 C -0.08 -1.04 4.78 -19.87 -0.09 -1.13 16
23 C -0.12 -1.56 8.76 22.27 0.20 -1.36 16
24 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16
25 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16
26 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16
27 C -0.12 -1.44 9.67 22.27 0.22 -1.23 16
28 H 0.06 0.62 7.37 -2.39 -0.02 0.60 16
29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.06 0.64 7.18 -2.39 -0.02 0.62 16
31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.07 1.17 7.59 -2.39 -0.02 1.15 16
33 H 0.42 6.56 7.13 -92.71 -0.66 5.90 16
34 H 0.42 10.93 7.94 -92.71 -0.74 10.19 16
35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
36 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16
37 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16
38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16
39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16
40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16
41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16
42 H 0.13 1.38 7.16 -2.91 -0.02 1.36 16
43 H 0.13 1.11 8.06 -2.91 -0.02 1.09 16
44 H 0.14 0.95 8.06 -2.91 -0.02 0.92 16
45 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16
46 H 0.13 1.14 7.95 -2.91 -0.02 1.11 16
Total: -1.00 -68.96 389.38 1.65 -67.31
By element:
Atomic # 1 Polarization: 19.45 SS G_CDS: -0.41 Total: 19.04 kcal
Atomic # 6 Polarization: -10.22 SS G_CDS: 4.88 Total: -5.34 kcal
Atomic # 7 Polarization: -88.61 SS G_CDS: -4.74 Total: -93.35 kcal
Atomic # 8 Polarization: -33.43 SS G_CDS: -0.11 Total: -33.53 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal
Total: -68.96 1.65 -67.31 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001117416677.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.450 kcal
(2) G-P(sol) polarization free energy of solvation -68.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.412 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds