Wall clock time and date at job start Tue Mar 31 2020 13:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47002 * 2 1 4 4 C 1.36936 * 120.00202 * 275.90895 * 3 2 1 5 5 H 1.08002 * 119.99440 * 34.09496 * 4 3 2 6 6 C 1.38814 * 120.00319 * 214.08738 * 4 3 2 7 7 N 1.31618 * 119.99732 * 17.02481 * 6 4 3 8 8 Si 1.86803 * 119.99890 * 197.01515 * 6 4 3 9 9 H 1.48496 * 109.47394 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46637 * 120.00651 * 8 6 4 11 11 H 1.48494 * 109.46787 * 240.00160 * 8 6 4 12 12 C 1.46502 * 120.00250 * 95.90855 * 3 2 1 13 13 H 1.08997 * 109.47423 * 177.15434 * 12 3 2 14 14 C 1.53001 * 109.46870 * 57.16034 * 12 3 2 15 15 C 1.53000 * 109.47091 * 297.16076 * 12 3 2 16 16 N 1.46504 * 109.47228 * 304.99382 * 15 12 3 17 17 C 1.34770 * 120.00202 * 180.02562 * 16 15 12 18 18 O 1.21554 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.47848 * 119.99781 * 180.02562 * 17 16 15 20 20 C 1.39591 * 120.13459 * 359.72412 * 19 17 16 21 21 C 1.38000 * 119.89158 * 179.80678 * 20 19 17 22 22 C 1.38130 * 120.11042 * 0.43636 * 21 20 19 23 23 C 1.38758 * 120.27496 * 359.81502 * 22 21 20 24 24 C 1.37704 * 120.18309 * 359.95997 * 23 22 21 25 25 C 1.51111 * 107.25950 * 179.97438 * 23 22 21 26 26 O 1.43929 * 105.95357 * 17.71564 * 25 23 22 27 27 C 1.43922 * 104.97568 * 331.48822 * 26 25 23 28 28 H 1.09003 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47202 * 300.00093 * 1 2 3 30 30 H 1.09000 * 109.47364 * 60.00039 * 1 2 3 31 31 H 1.09004 * 109.47187 * 119.99506 * 2 1 3 32 32 H 1.08998 * 109.47663 * 240.00166 * 2 1 3 33 33 H 0.97002 * 119.99704 * 180.02562 * 7 6 4 34 34 H 1.08990 * 109.47694 * 59.99815 * 14 12 3 35 35 H 1.08997 * 109.46978 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.47023 * 299.99897 * 14 12 3 37 37 H 1.08994 * 109.47414 * 64.99901 * 15 12 3 38 38 H 1.09005 * 109.46977 * 184.99726 * 15 12 3 39 39 H 0.97000 * 119.99386 * 0.02562 * 16 15 12 40 40 H 1.07996 * 120.05591 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.94433 * 180.22851 * 21 20 19 42 42 H 1.07996 * 120.09913 * 180.02562 * 24 23 22 43 43 H 1.09000 * 110.15684 * 136.83736 * 25 23 22 44 44 H 1.08998 * 110.15252 * 258.59924 * 25 23 22 45 45 H 1.08996 * 110.15748 * 147.64037 * 27 26 25 46 46 H 1.09000 * 110.15199 * 269.32985 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4231 1.8928 -1.9760 6 6 3.1563 2.9878 -1.3517 7 7 4.1989 2.9694 -0.5487 8 14 3.0557 4.2521 -2.7232 9 1 1.7917 4.0628 -3.4792 10 1 3.0838 5.6176 -2.1404 11 1 4.2115 4.0811 -3.6396 12 6 2.3856 2.0284 1.2620 13 1 2.7710 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1517 2.1302 2.1609 16 7 0.0787 2.8208 1.4411 17 6 -1.1108 3.0268 2.0403 18 8 -1.2932 2.6400 3.1781 19 6 -2.1938 3.7232 1.3136 20 6 -1.9854 4.1736 0.0088 21 6 -3.0010 4.8194 -0.6662 22 6 -4.2193 5.0285 -0.0498 23 6 -4.4310 4.5879 1.2488 24 6 -3.4272 3.9380 1.9317 25 6 -5.8445 4.9665 1.6260 26 8 -6.5254 5.2374 0.3872 27 6 -5.4967 5.6920 -0.5109 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 4.9149 3.6127 -0.6687 34 1 4.3412 1.1270 1.3252 35 1 3.7352 1.6809 2.9047 36 1 3.0769 0.2004 2.1683 37 1 0.8191 1.1295 2.4362 38 1 1.4037 2.6900 3.0617 39 1 0.2245 3.1297 0.5332 40 1 -1.0318 4.0144 -0.4725 41 1 -2.8419 5.1650 -1.6771 42 1 -3.5936 3.5952 2.9422 43 1 -6.3281 4.1406 2.1475 44 1 -5.8397 5.8571 2.2544 45 1 -5.7292 5.3899 -1.5321 46 1 -5.3999 6.7761 -0.4532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155802481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:30 Heat of formation + Delta-G solvation = -27.911308 kcal Electronic energy + Delta-G solvation = -27428.843807 eV Core-core repulsion = 23705.287851 eV Total energy + Delta-G solvation = -3723.555956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.88270 -39.35589 -37.30979 -36.72493 -33.79519 -32.01130 -31.76069 -31.69138 -30.79635 -28.25588 -28.11627 -26.23966 -24.43068 -23.98245 -22.54673 -21.85077 -21.66162 -19.81398 -19.30559 -17.62897 -16.89619 -16.59539 -16.50975 -16.07755 -15.43186 -15.05617 -14.81764 -14.48812 -14.22284 -14.11086 -13.71501 -13.59591 -13.32248 -12.92483 -12.82902 -12.71579 -12.38069 -12.31260 -12.05092 -11.90254 -11.78850 -11.56561 -11.12090 -11.04751 -11.00934 -10.87549 -10.72847 -10.32063 -10.29764 -10.12185 -9.69510 -9.58236 -9.48301 -9.04618 -8.78187 -8.58232 -8.40245 -6.71338 -5.94358 -3.44501 0.73403 1.19094 2.96052 3.24498 3.34079 3.35524 3.57690 3.67355 3.86282 4.06111 4.35463 4.41767 4.74164 4.99527 5.09128 5.09956 5.17566 5.20600 5.24931 5.31375 5.35032 5.51798 5.60114 5.83173 5.87503 6.02740 6.07218 6.13302 6.17319 6.22712 6.27203 6.34346 6.44292 6.45653 6.50390 6.57038 6.64166 6.69660 6.79434 6.88531 7.00184 7.13258 7.42313 7.50926 7.70613 8.08190 8.37980 8.64413 9.09941 9.71350 10.29445 11.11742 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.004035 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.853265 B = 6937.239004 C = 8089.251924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.173 3.827 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.101 3.899 16 N -0.692 5.692 17 C 0.548 3.452 18 O -0.556 6.556 19 C -0.119 4.119 20 C -0.075 4.075 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.038 4.038 25 C 0.094 3.906 26 O -0.362 6.362 27 C 0.090 3.910 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.411 0.589 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.506 4.041 1.885 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.216 1.216 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.334 3.666 18 O -0.436 6.436 19 C -0.122 4.122 20 C -0.094 4.094 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.057 4.057 25 C 0.018 3.982 26 O -0.281 6.281 27 C 0.014 3.986 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.249 0.751 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.652 3.823 2.616 14.417 hybrid contribution 0.468 0.803 -1.161 1.487 sum -13.184 4.627 1.455 14.048 Atomic orbital electron populations 1.22424 1.00006 0.99030 1.01421 1.20776 0.91632 0.87454 0.98804 1.43889 1.75926 1.08315 1.02285 1.19127 1.07860 1.18773 0.93702 0.91809 1.25182 0.94492 1.01364 0.97738 1.70009 1.07243 1.36201 1.39593 0.86385 0.77778 0.81606 0.81983 1.20100 1.21467 1.21598 1.20538 0.89027 0.99522 0.84327 0.87982 1.21996 1.01022 0.98163 0.99151 1.22239 0.89038 0.95739 0.95426 1.45910 1.12025 1.57321 1.18997 1.18159 0.82630 0.79740 0.86042 1.90721 1.81982 1.52663 1.18255 1.20063 0.95011 1.02055 0.95097 1.21513 0.99458 0.95096 0.93341 1.20349 0.91396 0.99668 1.00309 1.21234 0.96159 0.98673 0.95567 1.20928 0.97019 1.01175 0.95570 1.20406 0.90384 0.94899 0.99994 1.21731 0.87938 1.01124 0.87429 1.89070 1.29682 1.86914 1.22405 1.21790 0.83654 0.98136 0.95046 0.94797 0.93154 0.93479 0.94409 0.94083 0.93536 0.90578 0.94652 0.94934 0.92643 0.92799 0.75084 0.84162 0.84992 0.84477 0.88347 0.90423 0.88285 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.95 37.15 0.37 -2.67 16 2 C 0.14 2.76 5.75 -4.04 -0.02 2.74 16 3 N -0.58 -12.71 1.88 -165.66 -0.31 -13.02 16 4 C -0.26 -6.34 9.07 -15.06 -0.14 -6.47 16 5 H 0.06 1.54 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 7 N -0.89 -22.97 10.90 55.49 0.60 -22.36 16 8 Si 0.89 19.54 29.59 -169.99 -5.03 14.51 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.17 3.61 1.95 -67.93 -0.13 3.48 16 13 H 0.10 2.42 5.94 -51.93 -0.31 2.11 16 14 C -0.14 -2.86 9.05 37.16 0.34 -2.52 16 15 C 0.10 1.92 4.36 -4.04 -0.02 1.90 16 16 N -0.69 -12.52 4.23 -61.25 -0.26 -12.78 16 17 C 0.55 9.85 7.73 -12.33 -0.10 9.75 16 18 O -0.56 -11.40 16.35 5.32 0.09 -11.31 16 19 C -0.12 -1.82 5.88 -104.94 -0.62 -2.44 16 20 C -0.08 -1.04 9.54 -39.16 -0.37 -1.41 16 21 C -0.10 -1.17 10.03 -39.71 -0.40 -1.57 16 22 C -0.12 -1.34 6.33 -104.25 -0.66 -2.00 16 23 C -0.15 -1.78 6.31 -104.42 -0.66 -2.44 16 24 C -0.04 -0.52 9.59 -39.26 -0.38 -0.90 16 25 C 0.09 0.94 7.63 36.21 0.28 1.21 16 26 O -0.36 -4.06 11.72 -35.23 -0.41 -4.47 16 27 C 0.09 0.86 7.63 36.22 0.28 1.13 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.72 6.29 -51.93 -0.33 0.40 16 32 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.08 1.71 7.69 -51.93 -0.40 1.31 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 37 H 0.06 1.08 6.98 -51.93 -0.36 0.72 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.41 7.49 5.77 -40.82 -0.24 7.25 16 40 H 0.14 1.93 6.40 -52.49 -0.34 1.59 16 41 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.14 1.84 7.65 -52.49 -0.40 1.44 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -27.81 367.71 -8.85 -36.67 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.76 Total: 9.22 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.31 Total: -1.98 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.03 Total: -48.17 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.33 Total: -15.79 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.81 -8.85 -36.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155802481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.756 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds