Wall clock time and date at job start Tue Mar 31 2020 13:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47002 * 2 1 4 4 C 1.36936 * 120.00202 * 275.90895 * 3 2 1 5 5 H 1.08002 * 119.99440 * 34.09496 * 4 3 2 6 6 C 1.38814 * 120.00319 * 214.08738 * 4 3 2 7 7 N 1.31618 * 119.99732 * 17.02481 * 6 4 3 8 8 Si 1.86803 * 119.99890 * 197.01515 * 6 4 3 9 9 H 1.48496 * 109.47394 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46637 * 120.00651 * 8 6 4 11 11 H 1.48494 * 109.46787 * 240.00160 * 8 6 4 12 12 C 1.46502 * 120.00250 * 95.90855 * 3 2 1 13 13 H 1.08997 * 109.47423 * 177.15434 * 12 3 2 14 14 C 1.53001 * 109.46870 * 57.16034 * 12 3 2 15 15 C 1.53000 * 109.47091 * 297.16076 * 12 3 2 16 16 N 1.46504 * 109.47228 * 304.99382 * 15 12 3 17 17 C 1.34770 * 120.00202 * 180.02562 * 16 15 12 18 18 O 1.21554 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.47848 * 119.99781 * 180.02562 * 17 16 15 20 20 C 1.39591 * 120.13459 * 359.72412 * 19 17 16 21 21 C 1.38000 * 119.89158 * 179.80678 * 20 19 17 22 22 C 1.38130 * 120.11042 * 0.43636 * 21 20 19 23 23 C 1.38758 * 120.27496 * 359.81502 * 22 21 20 24 24 C 1.37704 * 120.18309 * 359.95997 * 23 22 21 25 25 C 1.51111 * 107.25950 * 179.97438 * 23 22 21 26 26 O 1.43929 * 105.95357 * 17.71564 * 25 23 22 27 27 C 1.43922 * 104.97568 * 331.48822 * 26 25 23 28 28 H 1.09003 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47202 * 300.00093 * 1 2 3 30 30 H 1.09000 * 109.47364 * 60.00039 * 1 2 3 31 31 H 1.09004 * 109.47187 * 119.99506 * 2 1 3 32 32 H 1.08998 * 109.47663 * 240.00166 * 2 1 3 33 33 H 0.97002 * 119.99704 * 180.02562 * 7 6 4 34 34 H 1.08990 * 109.47694 * 59.99815 * 14 12 3 35 35 H 1.08997 * 109.46978 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.47023 * 299.99897 * 14 12 3 37 37 H 1.08994 * 109.47414 * 64.99901 * 15 12 3 38 38 H 1.09005 * 109.46977 * 184.99726 * 15 12 3 39 39 H 0.97000 * 119.99386 * 0.02562 * 16 15 12 40 40 H 1.07996 * 120.05591 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.94433 * 180.22851 * 21 20 19 42 42 H 1.07996 * 120.09913 * 180.02562 * 24 23 22 43 43 H 1.09000 * 110.15684 * 136.83736 * 25 23 22 44 44 H 1.08998 * 110.15252 * 258.59924 * 25 23 22 45 45 H 1.08996 * 110.15748 * 147.64037 * 27 26 25 46 46 H 1.09000 * 110.15199 * 269.32985 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4231 1.8928 -1.9760 6 6 3.1563 2.9878 -1.3517 7 7 4.1989 2.9694 -0.5487 8 14 3.0557 4.2521 -2.7232 9 1 1.7917 4.0628 -3.4792 10 1 3.0838 5.6176 -2.1404 11 1 4.2115 4.0811 -3.6396 12 6 2.3856 2.0284 1.2620 13 1 2.7710 3.0276 1.0592 14 6 3.4622 1.1997 1.9656 15 6 1.1517 2.1302 2.1609 16 7 0.0787 2.8208 1.4411 17 6 -1.1108 3.0268 2.0403 18 8 -1.2932 2.6400 3.1781 19 6 -2.1938 3.7232 1.3136 20 6 -1.9854 4.1736 0.0088 21 6 -3.0010 4.8194 -0.6662 22 6 -4.2193 5.0285 -0.0498 23 6 -4.4310 4.5879 1.2488 24 6 -3.4272 3.9380 1.9317 25 6 -5.8445 4.9665 1.6260 26 8 -6.5254 5.2374 0.3872 27 6 -5.4967 5.6920 -0.5109 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 4.9149 3.6127 -0.6687 34 1 4.3412 1.1270 1.3252 35 1 3.7352 1.6809 2.9047 36 1 3.0769 0.2004 2.1683 37 1 0.8191 1.1295 2.4362 38 1 1.4037 2.6900 3.0617 39 1 0.2245 3.1297 0.5332 40 1 -1.0318 4.0144 -0.4725 41 1 -2.8419 5.1650 -1.6771 42 1 -3.5936 3.5952 2.9422 43 1 -6.3281 4.1406 2.1475 44 1 -5.8397 5.8571 2.2544 45 1 -5.7292 5.3899 -1.5321 46 1 -5.3999 6.7761 -0.4532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155802481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:29 Heat of formation + Delta-G solvation = -42.706685 kcal Electronic energy + Delta-G solvation = -27429.485383 eV Core-core repulsion = 23705.287851 eV Total energy + Delta-G solvation = -3724.197532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84333 -40.66938 -38.71445 -37.97578 -35.34499 -33.76545 -33.06340 -32.65453 -32.13218 -29.94983 -28.98848 -27.56757 -25.80351 -25.53038 -23.67488 -23.30410 -22.68764 -21.15004 -20.94419 -19.01780 -18.45396 -17.60350 -17.43137 -17.08512 -16.71641 -16.61728 -16.43453 -15.78024 -15.59438 -15.33266 -15.07595 -14.68047 -14.53625 -14.31189 -14.10344 -13.95137 -13.70077 -13.55265 -13.52510 -13.23262 -13.11106 -12.82587 -12.73858 -12.71946 -12.56396 -12.40200 -12.00697 -11.99372 -11.84872 -11.37764 -11.17238 -11.12713 -11.03343 -10.44094 -10.09978 -9.95733 -9.61857 -8.51895 -7.81367 -5.33185 -0.32824 0.20764 1.49102 1.55150 1.61806 1.75409 2.24355 2.55095 2.70648 2.91433 3.12886 3.33014 3.56181 3.64143 3.75314 3.88714 4.13433 4.20552 4.33987 4.38541 4.42696 4.45265 4.55058 4.56464 4.66340 4.73160 4.73799 4.79306 4.86150 4.88856 4.91612 4.96535 5.05627 5.15829 5.17371 5.21779 5.23546 5.31753 5.46603 5.57483 5.60962 5.70633 5.74856 5.76853 5.84522 6.50941 6.63963 7.20065 7.25572 7.92467 8.46113 9.22329 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.004035 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.853265 B = 6937.239004 C = 8089.251924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.261 4.261 5 H 0.062 0.938 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.263 1.263 10 H -0.292 1.292 11 H -0.302 1.302 12 C 0.180 3.820 13 H 0.074 0.926 14 C -0.135 4.135 15 C 0.113 3.887 16 N -0.692 5.692 17 C 0.549 3.451 18 O -0.587 6.587 19 C -0.142 4.142 20 C -0.081 4.081 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.150 4.150 24 C -0.045 4.045 25 C 0.094 3.906 26 O -0.376 6.376 27 C 0.089 3.911 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.248 0.752 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.411 0.589 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.714 4.746 1.027 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.219 1.219 11 H -0.229 1.229 12 C 0.072 3.928 13 H 0.092 0.908 14 C -0.195 4.195 15 C -0.013 4.013 16 N -0.341 5.341 17 C 0.337 3.663 18 O -0.470 6.470 19 C -0.145 4.145 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.151 4.151 24 C -0.064 4.064 25 C 0.018 3.982 26 O -0.295 6.295 27 C 0.013 3.987 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.249 0.751 40 H 0.154 0.846 41 H 0.177 0.823 42 H 0.152 0.848 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.136 0.864 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.885 4.520 1.748 16.608 hybrid contribution 1.095 0.567 -0.904 1.529 sum -14.790 5.087 0.844 15.663 Atomic orbital electron populations 1.22239 0.98282 1.00211 1.00659 1.20841 0.92809 0.86338 0.98710 1.44013 1.76063 1.09149 1.02097 1.19277 1.07211 1.18520 0.94158 0.91988 1.25732 0.94403 1.02991 0.99623 1.70140 1.07792 1.36741 1.41132 0.85510 0.77594 0.79452 0.79696 1.18659 1.21856 1.22924 1.20382 0.89864 0.98100 0.84413 0.90838 1.21867 0.99516 0.98938 0.99130 1.21987 0.88527 0.95767 0.94979 1.45861 1.12072 1.57319 1.18862 1.18552 0.82869 0.79134 0.85714 1.90690 1.82528 1.54127 1.19622 1.19890 0.94825 1.03819 0.95924 1.21526 1.00002 0.95615 0.92867 1.20600 0.90871 0.98731 1.01302 1.21615 0.96792 0.97586 0.95221 1.21188 0.97699 1.00335 0.95848 1.20410 0.90465 0.95495 1.00078 1.21871 0.86446 1.02411 0.87445 1.89063 1.30326 1.87166 1.22964 1.22004 0.81960 0.99113 0.95574 0.92627 0.93956 0.94081 0.93680 0.94955 0.94245 0.93449 0.93004 0.93660 0.92866 0.92709 0.75138 0.84645 0.82332 0.84836 0.87200 0.88575 0.86385 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.95 71.98 0.72 -4.64 16 2 C 0.14 5.40 5.75 86.38 0.50 5.90 16 3 N -0.59 -25.84 1.88 -678.03 -1.28 -27.11 16 4 C -0.26 -12.50 9.07 84.03 0.76 -11.74 16 5 H 0.06 2.96 7.89 -2.91 -0.02 2.94 16 6 C -0.03 -1.47 4.86 84.86 0.41 -1.06 16 7 N -0.91 -48.18 10.90 21.65 0.24 -47.95 16 8 Si 0.95 40.27 29.59 68.60 2.03 42.30 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 10 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 12 C 0.18 7.56 1.95 44.99 0.09 7.65 16 13 H 0.07 3.57 5.94 -2.39 -0.01 3.55 16 14 C -0.14 -5.38 9.05 71.98 0.65 -4.73 16 15 C 0.11 4.31 4.36 86.38 0.38 4.69 16 16 N -0.69 -25.22 4.23 -465.97 -1.97 -27.20 16 17 C 0.55 19.93 7.73 86.79 0.67 20.60 16 18 O -0.59 -24.41 16.35 -3.89 -0.06 -24.48 16 19 C -0.14 -4.30 5.88 -20.07 -0.12 -4.42 16 20 C -0.08 -2.16 9.54 22.54 0.22 -1.95 16 21 C -0.10 -2.07 10.03 22.19 0.22 -1.85 16 22 C -0.11 -2.28 6.33 -19.62 -0.12 -2.40 16 23 C -0.15 -3.36 6.31 -19.74 -0.12 -3.49 16 24 C -0.05 -1.23 9.59 22.48 0.22 -1.01 16 25 C 0.09 1.63 7.63 71.37 0.54 2.18 16 26 O -0.38 -7.26 11.72 -148.98 -1.75 -9.01 16 27 C 0.09 1.37 7.63 71.38 0.54 1.92 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.53 5.32 -2.39 -0.01 1.52 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.68 6.29 -2.38 -0.01 1.66 16 32 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 34 H 0.05 2.15 7.69 -2.39 -0.02 2.13 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.64 6.56 -2.39 -0.02 1.63 16 37 H 0.05 2.05 6.98 -2.39 -0.02 2.04 16 38 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.41 15.10 5.77 -92.71 -0.53 14.56 16 40 H 0.14 3.66 6.40 -2.91 -0.02 3.65 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.13 3.61 7.65 -2.91 -0.02 3.58 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -59.56 367.71 3.22 -56.34 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.46 Total: 31.45 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.55 Total: 5.65 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -3.01 Total: -102.25 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.81 Total: -33.49 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -59.56 3.22 -56.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155802481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.637 kcal (2) G-P(sol) polarization free energy of solvation -59.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds