Wall clock time and date at job start Tue Mar 31 2020 12:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34223 * 117.00583 * 2 1 4 4 O 1.20828 * 119.99699 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00392 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.46581 * 299.99876 * 5 3 2 7 7 C 1.52997 * 109.46806 * 59.99822 * 5 3 2 8 8 C 1.50699 * 109.47017 * 179.97438 * 5 3 2 9 9 C 1.38884 * 120.33401 * 120.02388 * 8 5 3 10 10 C 1.38298 * 118.50469 * 179.97438 * 9 8 5 11 11 C 1.39135 * 119.10048 * 0.02562 * 10 9 8 12 12 N 1.38994 * 119.70759 * 180.27416 * 11 10 9 13 13 C 1.46498 * 120.00019 * 359.72341 * 12 11 10 14 14 H 1.08999 * 109.41318 * 34.99885 * 13 12 11 15 15 C 1.52960 * 109.41371 * 154.85652 * 13 12 11 16 16 C 1.53235 * 109.40747 * 183.70412 * 15 13 12 17 17 C 1.51274 * 108.53533 * 305.37527 * 16 15 13 18 18 C 1.37871 * 120.84872 * 231.32581 * 17 16 15 19 19 N 1.31514 * 120.00124 * 359.97438 * 18 17 16 20 20 Si 1.86800 * 119.99857 * 180.02562 * 18 17 16 21 21 H 1.48502 * 109.47239 * 89.99846 * 20 18 17 22 22 H 1.48504 * 109.46950 * 209.99569 * 20 18 17 23 23 H 1.48494 * 109.47199 * 329.99527 * 20 18 17 24 24 C 1.51269 * 118.29861 * 51.34224 * 17 16 15 25 25 C 1.52958 * 109.41294 * 275.14029 * 13 12 11 26 26 N 1.32404 * 120.58437 * 359.97438 * 11 10 9 27 27 C 1.31973 * 121.62499 * 0.02562 * 26 11 10 28 28 H 1.09000 * 109.46921 * 59.99928 * 1 2 3 29 29 H 1.09001 * 109.47707 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47253 * 300.00270 * 1 2 3 31 31 H 1.09000 * 109.47249 * 59.99971 * 7 5 3 32 32 H 1.08997 * 109.46853 * 180.02562 * 7 5 3 33 33 H 1.08995 * 109.47410 * 299.99990 * 7 5 3 34 34 H 1.07997 * 120.74855 * 359.95351 * 9 8 5 35 35 H 1.08005 * 120.44849 * 180.02562 * 10 9 8 36 36 H 0.97005 * 120.00440 * 179.72359 * 12 11 10 37 37 H 1.08997 * 109.48350 * 303.68712 * 15 13 12 38 38 H 1.08998 * 109.48397 * 63.71332 * 15 13 12 39 39 H 1.09002 * 109.62470 * 65.08551 * 16 15 13 40 40 H 1.08992 * 109.62674 * 185.47025 * 16 15 13 41 41 H 0.97000 * 119.99985 * 180.02562 * 19 18 17 42 42 H 1.09001 * 109.62447 * 68.36861 * 24 17 16 43 43 H 1.09003 * 109.62647 * 188.74567 * 24 17 16 44 44 H 1.08996 * 109.48152 * 296.27328 * 25 13 12 45 45 H 1.08997 * 109.47972 * 56.31903 * 25 13 12 46 46 H 1.07998 * 119.56744 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1128 0.5813 -1.2502 8 6 3.9937 2.7198 -0.0011 9 6 4.7682 3.2227 1.0364 10 6 5.1394 4.5543 0.9974 11 6 4.7263 5.3409 -0.0734 12 7 5.0969 6.6794 -0.1282 13 6 5.9138 7.2576 0.9416 14 1 6.6171 6.5086 1.3056 15 6 6.6877 8.4595 0.3973 16 6 7.6116 9.0075 1.4901 17 6 6.7799 9.3059 2.7179 18 6 6.8520 10.5345 3.3392 19 7 7.6517 11.4650 2.8657 20 14 5.8148 10.8771 4.8546 21 1 6.5750 10.4947 6.0716 22 1 5.4844 12.3238 4.9116 23 1 4.5605 10.0853 4.7853 24 6 5.8674 8.2215 3.2467 25 6 5.0066 7.7036 2.0895 26 7 3.9882 4.8242 -1.0436 27 6 3.6194 3.5571 -1.0326 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.7228 1.0756 -2.1399 32 1 5.2013 0.6379 -1.2504 33 1 3.8038 -0.4639 -1.2502 34 1 5.0734 2.5881 1.8552 35 1 5.7417 4.9780 1.7875 36 1 4.8147 7.2307 -0.8748 37 1 7.2838 8.1496 -0.4610 38 1 5.9861 9.2355 0.0914 39 1 8.3710 8.2646 1.7340 40 1 8.0921 9.9207 1.1392 41 1 7.7027 12.3293 3.3030 42 1 6.4653 7.4058 3.6532 43 1 5.2270 8.6307 4.0282 44 1 4.3456 8.4979 1.7429 45 1 4.4105 6.8575 2.4314 46 1 3.0175 3.1702 -1.8415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:26 Heat of formation + Delta-G solvation = -80.074865 kcal Electronic energy + Delta-G solvation = -26449.745142 eV Core-core repulsion = 22723.927205 eV Total energy + Delta-G solvation = -3725.817938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88253 -40.98354 -39.15113 -37.57904 -36.35068 -35.04565 -33.35671 -32.97155 -31.54441 -30.02504 -28.68642 -28.20589 -25.69022 -24.69013 -24.10571 -23.19397 -22.88277 -21.40496 -20.95253 -18.84743 -18.49710 -17.97285 -17.82241 -17.52057 -17.23746 -16.42871 -16.07424 -15.72465 -15.39869 -15.26298 -14.92835 -14.71513 -14.52219 -14.41091 -14.20000 -13.99497 -13.93466 -13.66404 -13.45976 -13.32235 -12.86232 -12.79684 -12.73525 -12.54972 -12.50712 -12.29343 -11.93110 -11.81737 -11.76316 -11.45039 -11.35721 -11.08215 -10.85365 -10.63074 -10.56918 -10.42852 -10.33898 -8.53265 -8.16924 -6.10978 0.38482 0.50845 1.20413 1.38334 1.41913 1.48967 1.82687 2.24020 2.40572 3.00915 3.11687 3.56402 3.69322 3.88185 4.00490 4.07298 4.15165 4.16876 4.19990 4.32675 4.34589 4.38005 4.41969 4.56483 4.70219 4.73315 4.88382 4.88699 4.93194 4.95754 4.97367 5.06310 5.10068 5.17710 5.22618 5.26529 5.29525 5.40142 5.44300 5.57732 5.62396 5.72182 5.76878 5.82900 6.15916 6.33938 6.70137 6.76509 6.95560 7.27830 7.47077 8.93670 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.002599 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.147001 B =10772.580465 C =11344.614063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.018 4.018 6 H 0.143 0.857 7 C -0.137 4.137 8 C -0.204 4.204 9 C -0.016 4.016 10 C -0.253 4.253 11 C 0.395 3.605 12 N -0.718 5.718 13 C 0.179 3.821 14 H 0.078 0.922 15 C -0.103 4.103 16 C 0.011 3.989 17 C -0.497 4.497 18 C 0.022 3.978 19 N -0.931 5.931 20 Si 0.937 3.063 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.252 1.252 24 C -0.020 4.020 25 C -0.111 4.111 26 N -0.577 5.577 27 C 0.169 3.831 28 H 0.058 0.942 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.137 0.863 36 H 0.400 0.600 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.007 0.993 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -26.059 -5.714 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.426 6.426 5 C -0.037 4.037 6 H 0.161 0.839 7 C -0.195 4.195 8 C -0.210 4.210 9 C -0.041 4.041 10 C -0.278 4.278 11 C 0.159 3.841 12 N -0.347 5.347 13 C 0.074 3.926 14 H 0.096 0.904 15 C -0.141 4.141 16 C -0.027 4.027 17 C -0.516 4.516 18 C -0.177 4.177 19 N -0.571 5.571 20 Si 0.764 3.236 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.177 1.177 24 C -0.058 4.058 25 C -0.150 4.150 26 N -0.295 5.295 27 C 0.010 3.990 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.184 0.816 35 H 0.154 0.846 36 H 0.235 0.765 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.644 -24.966 -6.215 27.476 hybrid contribution -0.552 1.028 1.047 1.568 sum -10.196 -23.938 -5.168 26.527 Atomic orbital electron populations 1.23511 0.75256 1.05605 1.02180 1.86488 1.24503 1.32575 1.83726 1.24270 0.92805 0.81099 0.71202 1.90714 1.67965 1.37649 1.46256 1.19787 0.85721 0.93189 1.05022 0.83922 1.21820 1.02711 1.01046 0.93882 1.20070 1.06146 0.96353 0.98398 1.21510 0.92168 0.93876 0.96569 1.21616 1.09204 0.95775 1.01230 1.18693 0.89366 0.86084 0.89923 1.44922 1.56494 1.06848 1.26469 1.20745 0.91097 0.94580 0.86171 0.90404 1.21704 0.98365 0.95802 0.98259 1.19290 0.94187 0.96025 0.93219 1.20638 1.22504 0.97248 1.11204 1.25593 0.96546 0.95864 0.99654 1.69966 1.39715 1.05498 1.41904 0.85857 0.80546 0.76580 0.80605 1.19812 1.22219 1.17665 1.19818 0.95006 0.96294 0.94708 1.21895 0.97705 0.98774 0.96624 1.67163 1.17903 1.15843 1.28556 1.22240 0.92917 0.87159 0.96647 0.92288 0.84861 0.92557 0.92666 0.89695 0.89327 0.81629 0.84554 0.76550 0.92744 0.93763 0.97413 0.95268 0.92881 0.95162 0.94749 0.94119 0.93168 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.63 10.47 -51.35 -0.54 -6.17 16 3 C 0.46 9.12 7.13 71.24 0.51 9.63 16 4 O -0.54 -15.00 14.87 21.96 0.33 -14.67 16 5 C -0.02 -0.26 3.02 -12.29 -0.04 -0.30 16 6 H 0.14 1.33 7.93 -2.39 -0.02 1.31 16 7 C -0.14 -1.47 8.94 71.98 0.64 -0.83 16 8 C -0.20 -4.52 4.41 -19.76 -0.09 -4.61 16 9 C -0.02 -0.35 9.79 22.44 0.22 -0.13 16 10 C -0.25 -7.20 8.82 22.50 0.20 -7.00 16 11 C 0.39 12.91 7.63 133.06 1.02 13.92 16 12 N -0.72 -24.05 5.24 -324.68 -1.70 -25.75 16 13 C 0.18 6.45 2.04 44.96 0.09 6.54 16 14 H 0.08 2.75 6.44 -2.39 -0.02 2.73 16 15 C -0.10 -4.14 5.40 30.66 0.17 -3.98 16 16 C 0.01 0.52 5.96 30.11 0.18 0.70 16 17 C -0.50 -25.38 5.51 -16.17 -0.09 -25.47 16 18 C 0.02 1.17 5.46 84.65 0.46 1.64 16 19 N -0.93 -54.17 12.74 21.45 0.27 -53.89 16 20 Si 0.94 42.84 27.53 68.60 1.89 44.73 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.25 -10.90 6.11 99.48 0.61 -10.30 16 24 C -0.02 -0.88 5.60 30.11 0.17 -0.72 16 25 C -0.11 -4.33 5.42 30.66 0.17 -4.16 16 26 N -0.58 -18.89 10.39 -193.27 -2.01 -20.90 16 27 C 0.17 4.60 9.11 84.62 0.77 5.37 16 28 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 29 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.05 0.68 7.40 -2.39 -0.02 0.66 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.67 8.11 -2.39 -0.02 0.65 16 34 H 0.17 2.38 8.00 -2.91 -0.02 2.36 16 35 H 0.14 3.83 6.15 -2.91 -0.02 3.81 16 36 H 0.40 13.10 8.73 -92.70 -0.81 12.29 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.03 1.58 7.08 -2.39 -0.02 1.56 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.03 1.51 4.59 -2.39 -0.01 1.49 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.81 7.73 -2.39 -0.02 1.80 16 46 H 0.15 3.68 7.51 -2.91 -0.02 3.66 16 Total: -1.00 -67.03 367.59 3.90 -63.13 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.09 Total: 21.39 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.57 Total: -7.86 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -3.44 Total: -100.55 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.21 Total: -20.84 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.89 Total: 44.73 kcal Total: -67.03 3.90 -63.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.942 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds