Wall clock time and date at job start Tue Mar 31 2020 12:31:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.46757 * 2 1
4 4 C 1.52996 * 109.47134 * 240.00236 * 2 1 3
5 5 C 1.50697 * 109.47174 * 174.99921 * 4 2 1
6 6 C 1.38231 * 119.99857 * 269.72284 * 5 4 2
7 7 C 1.38238 * 119.99713 * 179.78603 * 6 5 4
8 8 C 1.38237 * 120.00073 * 0.44775 * 7 6 5
9 9 N 1.48016 * 119.99890 * 179.82814 * 8 7 6
10 10 O 1.21805 * 119.99677 * 179.97438 * 9 8 7
11 11 O 1.21805 * 120.00206 * 359.97438 * 9 8 7
12 12 C 1.38228 * 119.99918 * 359.81063 * 8 7 6
13 13 C 1.38237 * 119.99744 * 90.00289 * 5 4 2
14 14 N 1.46897 * 109.47148 * 120.00433 * 2 1 3
15 15 C 1.46906 * 110.99732 * 274.99881 * 14 2 1
16 16 H 1.09003 * 109.41317 * 35.14164 * 15 14 2
17 17 C 1.52957 * 109.41127 * 154.99921 * 15 14 2
18 18 C 1.53230 * 109.40594 * 183.70277 * 17 15 14
19 19 C 1.51275 * 108.53574 * 305.37569 * 18 17 15
20 20 C 1.37873 * 120.85122 * 231.36449 * 19 18 17
21 21 N 1.31519 * 120.00042 * 349.12415 * 20 19 18
22 22 Si 1.86796 * 120.00157 * 169.12078 * 20 19 18
23 23 H 1.48501 * 109.46904 * 354.66288 * 22 20 19
24 24 H 1.48498 * 109.47013 * 114.66026 * 22 20 19
25 25 H 1.48503 * 109.47257 * 234.65918 * 22 20 19
26 26 C 1.51265 * 118.29863 * 51.34652 * 19 18 17
27 27 C 1.52960 * 109.41503 * 275.35279 * 15 14 2
28 28 H 1.08997 * 109.47378 * 59.99492 * 1 2 3
29 29 H 1.09000 * 109.47008 * 299.99815 * 1 2 3
30 30 H 1.08996 * 109.47285 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47025 * 295.00201 * 4 2 1
32 32 H 1.09001 * 109.47266 * 54.99717 * 4 2 1
33 33 H 1.07998 * 120.00195 * 0.02562 * 6 5 4
34 34 H 1.08005 * 119.99643 * 180.28131 * 7 6 5
35 35 H 1.07996 * 120.00018 * 180.02562 * 12 8 7
36 36 H 1.07999 * 120.00052 * 359.97408 * 13 5 4
37 37 H 1.00902 * 111.00282 * 38.94987 * 14 2 1
38 38 H 1.08994 * 109.48631 * 303.68299 * 17 15 14
39 39 H 1.08998 * 109.48330 * 63.72580 * 17 15 14
40 40 H 1.09000 * 109.62446 * 65.08297 * 18 17 15
41 41 H 1.08995 * 109.62929 * 185.66239 * 18 17 15
42 42 H 0.96999 * 120.00262 * 179.97438 * 21 20 19
43 43 H 1.08998 * 109.63347 * 68.36606 * 26 19 18
44 44 H 1.09006 * 109.62546 * 188.74464 * 26 19 18
45 45 H 1.09001 * 109.47992 * 296.27822 * 27 15 14
46 46 H 1.09002 * 109.47947 * 56.31284 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5419 -0.6148 -1.3127
6 6 4.1323 0.4463 -1.9731
7 6 5.5100 0.5462 -2.0276
8 6 6.2972 -0.4200 -1.4295
9 7 7.7724 -0.3150 -1.4911
10 8 8.4660 -1.1661 -0.9638
11 8 8.2926 0.6225 -2.0691
12 6 5.7068 -1.4839 -0.7737
13 6 4.3291 -1.5816 -0.7155
14 7 2.0197 -0.6926 1.1994
15 6 2.0825 0.2225 2.3469
16 1 1.2558 0.9308 2.2911
17 6 1.9769 -0.5809 3.6441
18 6 1.9493 0.3801 4.8373
19 6 3.1628 1.2798 4.7583
20 6 4.0008 1.4336 5.8423
21 7 3.6429 0.9723 7.0208
22 14 5.6445 2.2970 5.6372
23 1 5.8664 2.6042 4.2013
24 1 5.6413 3.5596 6.4187
25 1 6.7325 1.4135 6.1283
26 6 3.4336 2.0062 3.4594
27 6 3.4074 0.9863 2.3162
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 1.7516 -1.7714 -1.2056
32 1 1.6053 -0.2617 -2.1370
33 1 3.5173 1.1994 -2.4433
34 1 5.9713 1.3778 -2.5397
35 1 6.3218 -2.2386 -0.3062
36 1 3.8677 -2.4128 -0.2031
37 1 1.4495 -1.4980 1.4100
38 1 1.0613 -1.1720 3.6323
39 1 2.8371 -1.2446 3.7318
40 1 1.0428 0.9841 4.8001
41 1 1.9755 -0.1891 5.7665
42 1 4.2326 1.0801 7.7834
43 1 2.6644 2.7607 3.2945
44 1 4.4120 2.4847 3.5046
45 1 4.2338 0.2855 2.4352
46 1 3.5055 1.5058 1.3630
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173216376.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:46
Heat of formation + Delta-G solvation = -0.891406 kcal
Electronic energy + Delta-G solvation = -27245.100824 eV
Core-core repulsion = 23522.716539 eV
Total energy + Delta-G solvation = -3722.384285 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.11685 -39.80745 -38.07705 -36.51442 -35.73502 -33.12201 -31.89856 -31.45639
-30.06561 -29.44482 -27.95787 -26.32276 -25.09418 -23.24616 -22.34215 -21.68526
-21.45743 -20.30576 -19.33940 -19.22738 -18.61549 -17.47172 -16.35959 -16.02468
-15.85944 -15.13733 -14.86836 -14.51419 -14.44926 -14.09313 -13.90421 -13.39353
-13.28421 -12.91110 -12.71877 -12.45831 -12.33878 -12.22381 -11.95141 -11.65980
-11.60037 -11.45767 -11.28322 -11.12865 -11.10563 -11.09341 -10.82310 -10.78203
-10.42969 -10.18133 -9.99509 -9.44396 -9.38200 -9.31700 -8.94941 -8.65579
-8.41708 -8.06079 -6.12967 -4.01281 -0.13436 0.93486 1.37664 1.47087
3.24440 3.25994 3.36434 3.37896 4.23400 4.34401 4.38063 4.41334
4.46096 4.79085 4.89084 4.91793 5.08269 5.14331 5.20371 5.25653
5.33495 5.55083 5.59530 5.64925 5.69412 5.71050 5.78105 5.80807
5.94724 6.03600 6.19740 6.21102 6.24587 6.49296 6.51152 6.63992
6.72915 6.77289 6.91736 7.00646 7.14841 7.42375 7.48465 7.63413
7.68178 7.71398 7.73468 7.82377 8.37246 8.95037 9.53931 10.96703
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.009859 B = 0.004797 C = 0.003522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2839.356677 B = 5835.493510 C = 7948.002388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.086 3.914
3 H 0.080 0.920
4 C -0.078 4.078
5 C -0.005 4.005
6 C -0.124 4.124
7 C -0.056 4.056
8 C -0.054 4.054
9 N 0.033 4.967
10 O -0.166 6.166
11 O -0.171 6.171
12 C -0.054 4.054
13 C -0.086 4.086
14 N -0.685 5.685
15 C 0.103 3.897
16 H 0.032 0.968
17 C -0.108 4.108
18 C 0.014 3.986
19 C -0.485 4.485
20 C 0.077 3.923
21 N -0.887 5.887
22 Si 0.875 3.125
23 H -0.257 1.257
24 H -0.283 1.283
25 H -0.285 1.285
26 C -0.027 4.027
27 C -0.087 4.087
28 H 0.057 0.943
29 H 0.060 0.940
30 H 0.056 0.944
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.141 0.859
34 H 0.148 0.852
35 H 0.149 0.851
36 H 0.148 0.852
37 H 0.334 0.666
38 H 0.026 0.974
39 H 0.056 0.944
40 H 0.001 0.999
41 H 0.054 0.946
42 H 0.263 0.737
43 H 0.012 0.988
44 H 0.039 0.961
45 H 0.052 0.948
46 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.307 -4.618 -18.933 19.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.025 4.025
3 H 0.098 0.902
4 C -0.116 4.116
5 C -0.006 4.006
6 C -0.142 4.142
7 C -0.075 4.075
8 C -0.137 4.137
9 N 0.550 4.450
10 O -0.381 6.381
11 O -0.385 6.385
12 C -0.073 4.073
13 C -0.105 4.105
14 N -0.315 5.315
15 C -0.005 4.005
16 H 0.051 0.949
17 C -0.146 4.146
18 C -0.024 4.024
19 C -0.504 4.504
20 C -0.126 4.126
21 N -0.525 5.525
22 Si 0.704 3.296
23 H -0.182 1.182
24 H -0.209 1.209
25 H -0.211 1.211
26 C -0.065 4.065
27 C -0.125 4.125
28 H 0.076 0.924
29 H 0.079 0.921
30 H 0.075 0.925
31 H 0.099 0.901
32 H 0.097 0.903
33 H 0.159 0.841
34 H 0.165 0.835
35 H 0.167 0.833
36 H 0.165 0.835
37 H 0.152 0.848
38 H 0.045 0.955
39 H 0.074 0.926
40 H 0.019 0.981
41 H 0.072 0.928
42 H 0.073 0.927
43 H 0.030 0.970
44 H 0.057 0.943
45 H 0.071 0.929
46 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -4.281 -4.605 -18.866 19.886
hybrid contribution 0.408 0.627 0.312 0.810
sum -3.873 -3.978 -18.554 19.367
Atomic orbital electron populations
1.22489 0.96993 1.02056 1.02372 1.21525 0.92294 0.98336 0.90303
0.90156 1.20834 0.89857 1.02484 0.98405 1.20220 0.96777 0.92321
0.91233 1.21054 0.93066 0.99022 1.01098 1.20947 0.93756 0.96875
0.95923 1.21072 0.78846 1.02491 1.11280 1.43673 1.03894 0.99437
0.97981 1.94532 1.61958 1.35261 1.46393 1.94512 1.76056 1.24965
1.42997 1.21079 0.96070 0.95669 0.94461 1.21064 0.91142 1.00211
0.98074 1.60758 1.56310 1.10127 1.04346 1.21419 0.97414 0.93029
0.88616 0.94949 1.21808 0.98602 0.98385 0.95835 1.19321 0.95029
0.94047 0.94000 1.19990 1.09223 1.26207 0.95021 1.24827 0.97859
0.95222 0.94647 1.69894 1.36609 1.46416 0.99558 0.86800 0.84626
0.79502 0.78699 1.18189 1.20936 1.21122 1.19970 0.97579 0.94660
0.94276 1.21505 0.96117 0.98019 0.96909 0.92393 0.92104 0.92463
0.90114 0.90321 0.84114 0.83470 0.83302 0.83454 0.84760 0.95523
0.92559 0.98072 0.92784 0.92681 0.96971 0.94259 0.92938 0.95826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.64 9.15 37.16 0.34 -1.30 16
2 C 0.09 0.89 2.37 -67.72 -0.16 0.73 16
3 H 0.08 0.97 7.07 -51.93 -0.37 0.60 16
4 C -0.08 -0.62 5.03 -27.89 -0.14 -0.76 16
5 C -0.01 -0.05 4.95 -104.63 -0.52 -0.57 16
6 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16
7 C -0.06 -0.62 9.56 -39.58 -0.38 -1.00 16
8 C -0.05 -0.71 6.85 -79.95 -0.55 -1.26 16
9 N 0.03 0.50 4.45 33.96 0.15 0.65 16
10 O -0.17 -2.69 18.45 -29.46 -0.54 -3.23 16
11 O -0.17 -2.70 18.45 -29.46 -0.54 -3.24 16
12 C -0.05 -0.64 9.56 -39.58 -0.38 -1.01 16
13 C -0.09 -0.90 9.31 -39.58 -0.37 -1.27 16
14 N -0.68 -8.81 5.44 -99.78 -0.54 -9.35 16
15 C 0.10 1.79 2.21 -67.75 -0.15 1.64 16
16 H 0.03 0.59 7.11 -51.93 -0.37 0.22 16
17 C -0.11 -2.12 5.24 -26.63 -0.14 -2.26 16
18 C 0.01 0.34 5.93 -27.48 -0.16 0.18 16
19 C -0.49 -12.62 5.48 -98.92 -0.54 -13.16 16
20 C 0.08 2.11 5.44 -17.82 -0.10 2.01 16
21 N -0.89 -25.54 12.82 55.43 0.71 -24.83 16
22 Si 0.88 21.20 27.95 -169.99 -4.75 16.45 16
23 H -0.26 -6.03 5.57 56.52 0.32 -5.72 16
24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16
26 C -0.03 -0.62 5.65 -27.49 -0.16 -0.78 16
27 C -0.09 -1.72 5.43 -26.64 -0.14 -1.87 16
28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.06 0.66 7.42 -51.93 -0.39 0.28 16
30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16
31 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16
32 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16
33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16
34 H 0.15 1.44 7.61 -52.48 -0.40 1.04 16
35 H 0.15 1.65 7.61 -52.49 -0.40 1.25 16
36 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16
37 H 0.33 3.95 8.04 -39.29 -0.32 3.63 16
38 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16
39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
40 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16
41 H 0.05 1.44 7.19 -51.93 -0.37 1.07 16
42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16
44 H 0.04 0.93 4.35 -51.93 -0.23 0.70 16
45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
46 H 0.02 0.43 7.36 -51.93 -0.38 0.05 16
LS Contribution 370.44 15.07 5.58 5.58
Total: -1.00 -29.56 370.44 -10.94 -40.50
By element:
Atomic # 1 Polarization: 6.77 SS G_CDS: -7.08 Total: -0.31 kcal
Atomic # 6 Polarization: -18.30 SS G_CDS: -3.93 Total: -22.23 kcal
Atomic # 7 Polarization: -33.84 SS G_CDS: 0.32 Total: -33.52 kcal
Atomic # 8 Polarization: -5.39 SS G_CDS: -1.09 Total: -6.47 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -4.75 Total: 16.45 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -29.56 -10.94 -40.50 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173216376.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.607 kcal
(2) G-P(sol) polarization free energy of solvation -29.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds