Wall clock time and date at job start Tue Mar 31 2020 12:02:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47398 * 2 1
4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3
5 5 O 1.42898 * 109.46622 * 294.99785 * 4 2 1
6 6 C 1.35908 * 116.99858 * 179.97438 * 5 4 2
7 7 C 1.38732 * 120.05232 * 359.72291 * 6 5 4
8 8 C 1.38150 * 119.93882 * 179.69848 * 7 6 5
9 9 C 1.38264 * 120.05715 * 0.60239 * 8 7 6
10 10 C 1.38267 * 120.10894 * 359.67459 * 9 8 7
11 11 C 1.38135 * 120.05844 * 0.02586 * 10 9 8
12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3
13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1
14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1
15 15 C 1.47425 * 125.64727 * 359.69021 * 14 12 2
16 16 C 1.55129 * 104.71790 * 155.82066 * 15 14 12
17 17 C 1.55156 * 101.49115 * 37.29534 * 16 15 14
18 18 H 1.08998 * 110.87001 * 82.76061 * 17 16 15
19 19 N 1.46497 * 110.72039 * 205.96841 * 17 16 15
20 20 C 1.36930 * 120.00175 * 268.51617 * 19 17 16
21 21 H 1.08001 * 119.99952 * 0.02562 * 20 19 17
22 22 C 1.38816 * 120.00283 * 180.02562 * 20 19 17
23 23 N 1.31619 * 119.99570 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00244 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47249 * 89.99641 * 24 22 20
26 26 H 1.48496 * 109.47230 * 210.00191 * 24 22 20
27 27 H 1.48503 * 109.46929 * 329.99957 * 24 22 20
28 28 C 1.47018 * 125.64471 * 180.02562 * 14 12 2
29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3
30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3
32 32 H 1.09000 * 109.47059 * 54.99596 * 4 2 1
33 33 H 1.08996 * 109.47073 * 174.99688 * 4 2 1
34 34 H 1.08001 * 120.03178 * 359.97438 * 7 6 5
35 35 H 1.08002 * 119.96710 * 180.27324 * 8 7 6
36 36 H 1.08001 * 119.94300 * 179.70435 * 9 8 7
37 37 H 1.08007 * 119.96729 * 180.02562 * 10 9 8
38 38 H 1.08007 * 120.03017 * 179.97438 * 11 10 9
39 39 H 1.08999 * 110.36288 * 274.74494 * 15 14 12
40 40 H 1.08999 * 110.36926 * 37.07129 * 15 14 12
41 41 H 1.08997 * 111.19438 * 279.18787 * 16 15 14
42 42 H 1.09005 * 110.93872 * 155.28999 * 16 15 14
43 43 H 0.97000 * 119.99931 * 88.52597 * 19 17 16
44 44 H 0.97000 * 119.99648 * 180.02562 * 23 22 20
45 45 H 1.09007 * 109.88420 * 300.43135 * 28 14 12
46 46 H 1.08998 * 109.88913 * 61.60494 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 8 1.6620 0.0168 2.4130
6 6 2.0397 -0.4914 3.6156
7 6 2.7544 -1.6790 3.6744
8 6 3.1425 -2.1902 4.8978
9 6 2.8086 -1.5258 6.0634
10 6 2.0914 -0.3450 6.0076
11 6 1.7062 0.1736 4.7866
12 6 2.0323 -0.7104 -1.2305
13 8 2.7295 -1.6965 -1.1192
14 7 1.7067 -0.2500 -2.4546
15 6 0.8657 0.9283 -2.7337
16 6 1.2940 1.3915 -4.1509
17 6 1.5388 0.0329 -4.8592
18 1 0.6028 -0.3877 -5.2266
19 7 2.5014 0.1848 -5.9531
20 6 2.0602 0.4566 -7.2205
21 1 1.0026 0.5596 -7.4137
22 6 2.9723 0.6000 -8.2572
23 7 4.2611 0.4741 -8.0218
24 14 2.3704 0.9716 -9.9861
25 1 2.2965 2.4422 -10.1791
26 1 3.3135 0.3893 -10.9744
27 1 1.0227 0.3787 -10.1791
28 6 2.1257 -0.8436 -3.7327
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6054 -1.7198 1.2951
33 1 3.1263 -0.7995 1.2055
34 1 3.0109 -2.2011 2.7645
35 1 3.7027 -3.1124 4.9439
36 1 3.1088 -1.9296 7.0190
37 1 1.8321 0.1723 6.9196
38 1 1.1457 1.0958 4.7436
39 1 -0.1887 0.6524 -2.7247
40 1 1.0593 1.7141 -2.0035
41 1 2.2090 1.9825 -4.1125
42 1 0.4926 1.9472 -4.6379
43 1 3.4513 0.0926 -5.7796
44 1 4.8984 0.5746 -8.7461
45 1 3.2138 -0.8519 -3.7985
46 1 1.7395 -1.8596 -3.8139
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001187879921.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:14
Heat of formation + Delta-G solvation = -33.616061 kcal
Electronic energy + Delta-G solvation = -25856.055084 eV
Core-core repulsion = 22132.251751 eV
Total energy + Delta-G solvation = -3723.803333 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.59083 -39.91571 -37.87218 -37.26927 -34.44587 -33.81957 -31.51007 -31.24795
-30.01961 -29.58930 -27.89896 -26.94342 -24.62155 -23.39760 -22.85959 -22.49396
-21.50472 -20.11844 -19.13561 -18.52673 -17.44266 -17.10305 -16.28114 -16.15113
-15.95523 -15.76000 -15.42550 -14.74848 -14.58685 -14.13709 -13.88990 -13.68389
-13.55077 -13.46231 -13.39303 -12.83675 -12.79585 -12.51244 -12.24387 -12.06785
-11.87390 -11.81221 -11.63606 -11.40543 -11.21848 -11.00491 -10.94929 -10.86407
-10.72986 -10.37500 -10.13346 -9.81844 -9.70761 -9.28765 -9.01440 -8.49952
-8.46282 -7.09395 -5.86105 -3.17096 1.05729 1.17403 2.61550 2.63666
3.33281 3.38303 3.43839 3.45517 3.51932 4.30704 4.50895 4.53144
4.57706 4.60674 4.68454 4.85814 4.93865 5.02649 5.06740 5.11745
5.22097 5.27279 5.30807 5.35305 5.41673 5.46852 5.51564 5.60578
5.67223 5.71199 5.74177 5.89822 5.94765 6.04455 6.09461 6.13795
6.19132 6.25112 6.31299 6.49085 6.49766 6.55013 6.83927 7.15540
7.60764 7.62288 8.17195 8.31080 9.42592 9.96432 10.30956 11.35969
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.039412 B = 0.002015 C = 0.001962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.274125 B =13889.526329 C =14265.356962
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.104 4.104
3 H 0.108 0.892
4 C 0.080 3.920
5 O -0.314 6.314
6 C 0.134 3.866
7 C -0.208 4.208
8 C -0.080 4.080
9 C -0.163 4.163
10 C -0.083 4.083
11 C -0.155 4.155
12 C 0.534 3.466
13 O -0.547 6.547
14 N -0.607 5.607
15 C 0.096 3.904
16 C -0.156 4.156
17 C 0.172 3.828
18 H 0.067 0.933
19 N -0.715 5.715
20 C -0.247 4.247
21 H 0.073 0.927
22 C -0.010 4.010
23 N -0.929 5.929
24 Si 0.910 3.090
25 H -0.289 1.289
26 H -0.291 1.291
27 H -0.281 1.281
28 C 0.099 3.901
29 H 0.072 0.928
30 H 0.060 0.940
31 H 0.073 0.927
32 H 0.071 0.929
33 H 0.073 0.927
34 H 0.131 0.869
35 H 0.124 0.876
36 H 0.122 0.878
37 H 0.127 0.873
38 H 0.130 0.870
39 H 0.070 0.930
40 H 0.071 0.929
41 H 0.076 0.924
42 H 0.077 0.923
43 H 0.386 0.614
44 H 0.257 0.743
45 H 0.072 0.928
46 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.621 -0.379 25.927 27.027
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.126 4.126
3 H 0.126 0.874
4 C 0.005 3.995
5 O -0.228 6.228
6 C 0.089 3.911
7 C -0.227 4.227
8 C -0.098 4.098
9 C -0.181 4.181
10 C -0.101 4.101
11 C -0.173 4.173
12 C 0.322 3.678
13 O -0.426 6.426
14 N -0.340 5.340
15 C -0.027 4.027
16 C -0.197 4.197
17 C 0.060 3.940
18 H 0.085 0.915
19 N -0.355 5.355
20 C -0.378 4.378
21 H 0.091 0.909
22 C -0.207 4.207
23 N -0.577 5.577
24 Si 0.740 3.260
25 H -0.216 1.216
26 H -0.217 1.217
27 H -0.207 1.207
28 C -0.024 4.024
29 H 0.091 0.909
30 H 0.079 0.921
31 H 0.092 0.908
32 H 0.089 0.911
33 H 0.091 0.909
34 H 0.149 0.851
35 H 0.142 0.858
36 H 0.140 0.860
37 H 0.145 0.855
38 H 0.148 0.852
39 H 0.088 0.912
40 H 0.089 0.911
41 H 0.094 0.906
42 H 0.096 0.904
43 H 0.221 0.779
44 H 0.067 0.933
45 H 0.090 0.910
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -7.407 -0.751 25.787 26.840
hybrid contribution 0.221 0.082 -1.018 1.045
sum -7.186 -0.668 24.769 25.799
Atomic orbital electron populations
1.21909 0.92026 1.03098 1.03681 1.21093 0.98693 1.01523 0.91262
0.87440 1.22508 1.00497 0.94679 0.81856 1.85972 1.74234 1.50216
1.12384 1.19019 0.94199 0.92473 0.85415 1.21402 1.04136 0.97545
0.99615 1.20988 0.97750 0.99222 0.91850 1.21068 1.01887 0.96800
0.98341 1.20959 0.96720 0.95578 0.96868 1.20451 1.05050 1.01880
0.89964 1.19833 0.80304 0.84386 0.83304 1.90710 1.38772 1.26772
1.86300 1.48394 1.50504 1.29768 1.05347 1.22586 0.94349 0.87112
0.98693 1.23638 1.02192 1.01006 0.92907 1.21190 0.93958 0.91580
0.87284 0.91462 1.42367 1.04719 1.84597 1.03843 1.19220 0.92479
1.41229 0.84834 0.90913 1.24790 0.95297 1.02304 0.98278 1.69666
1.00168 1.55966 1.31869 0.86159 0.77594 0.77900 0.84304 1.21623
1.21711 1.20665 1.22392 1.00708 0.97356 0.81959 0.90910 0.92130
0.90774 0.91083 0.90868 0.85117 0.85796 0.86020 0.85470 0.85236
0.91187 0.91074 0.90567 0.90431 0.77931 0.93317 0.91011 0.91565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 8.90 37.16 0.33 -1.05 16
2 C -0.10 -1.16 2.31 -91.77 -0.21 -1.37 16
3 H 0.11 1.08 7.85 -51.93 -0.41 0.68 16
4 C 0.08 0.90 3.47 37.16 0.13 1.03 16
5 O -0.31 -3.51 9.67 -19.45 -0.19 -3.70 16
6 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16
7 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16
8 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16
9 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16
10 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16
11 C -0.15 -1.44 9.99 -39.44 -0.39 -1.83 16
12 C 0.53 7.88 7.22 -10.98 -0.08 7.80 16
13 O -0.55 -9.96 16.25 5.56 0.09 -9.87 16
14 N -0.61 -8.93 3.32 -170.38 -0.57 -9.49 16
15 C 0.10 1.16 5.14 -2.41 -0.01 1.14 16
16 C -0.16 -2.40 6.78 -24.46 -0.17 -2.57 16
17 C 0.17 3.17 3.61 -66.09 -0.24 2.93 16
18 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16
19 N -0.72 -17.09 5.22 -51.65 -0.27 -17.36 16
20 C -0.25 -6.54 9.96 -15.06 -0.15 -6.69 16
21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
23 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16
24 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16
25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
28 C 0.10 1.71 6.62 -3.06 -0.02 1.69 16
29 H 0.07 0.61 4.98 -51.93 -0.26 0.35 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
31 H 0.07 0.62 7.82 -51.93 -0.41 0.22 16
32 H 0.07 0.80 7.65 -51.93 -0.40 0.40 16
33 H 0.07 0.87 7.49 -51.93 -0.39 0.49 16
34 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16
35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
37 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16
38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16
39 H 0.07 0.72 7.08 -51.93 -0.37 0.36 16
40 H 0.07 0.72 7.34 -51.93 -0.38 0.34 16
41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
43 H 0.39 9.98 7.56 -40.82 -0.31 9.67 16
44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
45 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16
46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
LS Contribution 374.56 15.07 5.64 5.64
Total: -1.00 -31.41 374.56 -9.30 -40.71
By element:
Atomic # 1 Polarization: 15.48 SS G_CDS: -7.00 Total: 8.49 kcal
Atomic # 6 Polarization: -1.68 SS G_CDS: -2.72 Total: -4.40 kcal
Atomic # 7 Polarization: -53.45 SS G_CDS: -0.11 Total: -53.56 kcal
Atomic # 8 Polarization: -13.47 SS G_CDS: -0.10 Total: -13.57 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -31.41 -9.30 -40.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001187879921.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.094 kcal
(2) G-P(sol) polarization free energy of solvation -31.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds