Wall clock time and date at job start Tue Mar 31 2020 12:02:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09002 * 109.47398 * 2 1
4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3
5 5 O 1.42898 * 109.46622 * 294.99785 * 4 2 1
6 6 C 1.35908 * 116.99858 * 179.97438 * 5 4 2
7 7 C 1.38732 * 120.05232 * 359.72291 * 6 5 4
8 8 C 1.38150 * 119.93882 * 179.69848 * 7 6 5
9 9 C 1.38264 * 120.05715 * 0.60239 * 8 7 6
10 10 C 1.38267 * 120.10894 * 359.67459 * 9 8 7
11 11 C 1.38135 * 120.05844 * 0.02586 * 10 9 8
12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3
13 13 O 1.21278 * 119.99818 * 240.00149 * 12 2 1
14 14 N 1.34777 * 119.99991 * 60.00288 * 12 2 1
15 15 C 1.47425 * 125.64727 * 359.69021 * 14 12 2
16 16 C 1.55129 * 104.71790 * 155.82066 * 15 14 12
17 17 C 1.55156 * 101.49115 * 37.29534 * 16 15 14
18 18 H 1.08998 * 110.87001 * 82.76061 * 17 16 15
19 19 N 1.46497 * 110.72039 * 205.96841 * 17 16 15
20 20 C 1.36930 * 120.00175 * 268.51617 * 19 17 16
21 21 H 1.08001 * 119.99952 * 0.02562 * 20 19 17
22 22 C 1.38816 * 120.00283 * 180.02562 * 20 19 17
23 23 N 1.31619 * 119.99570 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00244 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47249 * 89.99641 * 24 22 20
26 26 H 1.48496 * 109.47230 * 210.00191 * 24 22 20
27 27 H 1.48503 * 109.46929 * 329.99957 * 24 22 20
28 28 C 1.47018 * 125.64471 * 180.02562 * 14 12 2
29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3
30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3
32 32 H 1.09000 * 109.47059 * 54.99596 * 4 2 1
33 33 H 1.08996 * 109.47073 * 174.99688 * 4 2 1
34 34 H 1.08001 * 120.03178 * 359.97438 * 7 6 5
35 35 H 1.08002 * 119.96710 * 180.27324 * 8 7 6
36 36 H 1.08001 * 119.94300 * 179.70435 * 9 8 7
37 37 H 1.08007 * 119.96729 * 180.02562 * 10 9 8
38 38 H 1.08007 * 120.03017 * 179.97438 * 11 10 9
39 39 H 1.08999 * 110.36288 * 274.74494 * 15 14 12
40 40 H 1.08999 * 110.36926 * 37.07129 * 15 14 12
41 41 H 1.08997 * 111.19438 * 279.18787 * 16 15 14
42 42 H 1.09005 * 110.93872 * 155.28999 * 16 15 14
43 43 H 0.97000 * 119.99931 * 88.52597 * 19 17 16
44 44 H 0.97000 * 119.99648 * 180.02562 * 23 22 20
45 45 H 1.09007 * 109.88420 * 300.43135 * 28 14 12
46 46 H 1.08998 * 109.88913 * 61.60494 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 8 1.6620 0.0168 2.4130
6 6 2.0397 -0.4914 3.6156
7 6 2.7544 -1.6790 3.6744
8 6 3.1425 -2.1902 4.8978
9 6 2.8086 -1.5258 6.0634
10 6 2.0914 -0.3450 6.0076
11 6 1.7062 0.1736 4.7866
12 6 2.0323 -0.7104 -1.2305
13 8 2.7295 -1.6965 -1.1192
14 7 1.7067 -0.2500 -2.4546
15 6 0.8657 0.9283 -2.7337
16 6 1.2940 1.3915 -4.1509
17 6 1.5388 0.0329 -4.8592
18 1 0.6028 -0.3877 -5.2266
19 7 2.5014 0.1848 -5.9531
20 6 2.0602 0.4566 -7.2205
21 1 1.0026 0.5596 -7.4137
22 6 2.9723 0.6000 -8.2572
23 7 4.2611 0.4741 -8.0218
24 14 2.3704 0.9716 -9.9861
25 1 2.2965 2.4422 -10.1791
26 1 3.3135 0.3893 -10.9744
27 1 1.0227 0.3787 -10.1791
28 6 2.1257 -0.8436 -3.7327
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6054 -1.7198 1.2951
33 1 3.1263 -0.7995 1.2055
34 1 3.0109 -2.2011 2.7645
35 1 3.7027 -3.1124 4.9439
36 1 3.1088 -1.9296 7.0190
37 1 1.8321 0.1723 6.9196
38 1 1.1457 1.0958 4.7436
39 1 -0.1887 0.6524 -2.7247
40 1 1.0593 1.7141 -2.0035
41 1 2.2090 1.9825 -4.1125
42 1 0.4926 1.9472 -4.6379
43 1 3.4513 0.0926 -5.7796
44 1 4.8984 0.5746 -8.7461
45 1 3.2138 -0.8519 -3.7985
46 1 1.7395 -1.8596 -3.8139
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001187879921.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:13
Heat of formation + Delta-G solvation = -52.508137 kcal
Electronic energy + Delta-G solvation = -25856.874306 eV
Core-core repulsion = 22132.251751 eV
Total energy + Delta-G solvation = -3724.622555 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.57776 -40.87709 -38.94230 -38.30117 -36.01689 -34.97935 -33.19942 -31.94237
-31.03098 -30.72113 -29.35512 -27.78367 -26.06506 -24.92424 -23.72011 -23.32854
-22.39577 -21.57915 -20.20303 -19.37436 -19.35785 -18.13202 -17.28311 -17.10570
-16.88542 -16.84474 -16.43436 -16.38136 -15.54077 -15.36140 -15.18548 -14.87089
-14.69825 -14.50182 -14.32988 -14.05189 -13.79373 -13.56773 -13.38605 -13.18563
-13.04782 -12.98159 -12.74684 -12.59841 -12.48102 -12.39473 -12.16452 -12.06515
-11.84519 -11.73265 -11.71312 -11.63191 -10.95756 -10.92683 -9.95415 -9.74622
-9.18723 -9.05391 -7.95470 -5.25860 0.39063 0.48708 1.46975 1.49110
1.50790 1.58742 1.60849 2.33483 2.57259 2.84798 3.31736 3.39404
3.60938 3.73517 3.74280 3.87548 3.91602 3.98948 4.04331 4.17324
4.27204 4.29209 4.34030 4.38173 4.47102 4.50078 4.50948 4.58317
4.64960 4.73920 4.83485 4.88067 4.91543 5.00030 5.09111 5.16463
5.24959 5.25983 5.37003 5.43714 5.49236 5.53644 5.60669 5.84856
6.24882 6.37734 6.45248 6.98322 7.31322 8.03337 8.26549 9.28021
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.039412 B = 0.002015 C = 0.001962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.274125 B =13889.526329 C =14265.356962
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.094 4.094
3 H 0.125 0.875
4 C 0.086 3.914
5 O -0.317 6.317
6 C 0.109 3.891
7 C -0.226 4.226
8 C -0.090 4.090
9 C -0.163 4.163
10 C -0.082 4.082
11 C -0.163 4.163
12 C 0.531 3.469
13 O -0.589 6.589
14 N -0.607 5.607
15 C 0.102 3.898
16 C -0.147 4.147
17 C 0.165 3.835
18 H 0.075 0.925
19 N -0.731 5.731
20 C -0.239 4.239
21 H 0.085 0.915
22 C -0.078 4.078
23 N -0.972 5.972
24 Si 0.975 3.025
25 H -0.286 1.286
26 H -0.301 1.301
27 H -0.266 1.266
28 C 0.108 3.892
29 H 0.087 0.913
30 H 0.054 0.946
31 H 0.086 0.914
32 H 0.065 0.935
33 H 0.058 0.942
34 H 0.122 0.878
35 H 0.139 0.861
36 H 0.147 0.853
37 H 0.157 0.843
38 H 0.142 0.858
39 H 0.101 0.899
40 H 0.102 0.898
41 H 0.056 0.944
42 H 0.092 0.908
43 H 0.371 0.629
44 H 0.250 0.750
45 H 0.043 0.957
46 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.083 0.824 27.981 29.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.115 4.115
3 H 0.143 0.857
4 C 0.011 3.989
5 O -0.231 6.231
6 C 0.064 3.936
7 C -0.245 4.245
8 C -0.108 4.108
9 C -0.181 4.181
10 C -0.100 4.100
11 C -0.182 4.182
12 C 0.320 3.680
13 O -0.470 6.470
14 N -0.339 5.339
15 C -0.020 4.020
16 C -0.188 4.188
17 C 0.056 3.944
18 H 0.093 0.907
19 N -0.371 5.371
20 C -0.370 4.370
21 H 0.103 0.897
22 C -0.270 4.270
23 N -0.622 5.622
24 Si 0.805 3.195
25 H -0.213 1.213
26 H -0.228 1.228
27 H -0.191 1.191
28 C -0.017 4.017
29 H 0.105 0.895
30 H 0.073 0.927
31 H 0.105 0.895
32 H 0.083 0.917
33 H 0.076 0.924
34 H 0.140 0.860
35 H 0.157 0.843
36 H 0.165 0.835
37 H 0.174 0.826
38 H 0.159 0.841
39 H 0.119 0.881
40 H 0.120 0.880
41 H 0.075 0.925
42 H 0.110 0.890
43 H 0.203 0.797
44 H 0.059 0.941
45 H 0.062 0.938
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -9.945 0.474 27.887 29.611
hybrid contribution 0.976 -0.344 -1.499 1.822
sum -8.969 0.130 26.387 27.870
Atomic orbital electron populations
1.21909 0.89990 1.03225 1.04986 1.21056 1.00134 1.01453 0.88862
0.85749 1.22342 0.99558 0.94623 0.82414 1.85933 1.74483 1.50216
1.12440 1.19311 0.95426 0.93234 0.85654 1.21489 1.05004 0.97914
1.00107 1.21272 0.97838 0.99979 0.91722 1.21442 1.01013 0.96604
0.99024 1.21353 0.95747 0.95493 0.97419 1.20734 1.05168 1.02331
0.89939 1.20534 0.79409 0.83939 0.84090 1.90693 1.40616 1.28830
1.86890 1.48445 1.50725 1.30345 1.04421 1.22779 0.95316 0.86734
0.97127 1.23438 1.01936 0.98618 0.94771 1.21409 0.92907 0.93745
0.86389 0.90722 1.42560 1.04898 1.84949 1.04658 1.19659 0.92922
1.38690 0.85759 0.89681 1.25620 0.95497 1.03682 1.02196 1.69837
1.01365 1.58512 1.32502 0.85109 0.77338 0.77551 0.79551 1.21341
1.22771 1.19072 1.22066 0.98923 0.97313 0.83353 0.89476 0.92665
0.89471 0.91720 0.92396 0.85985 0.84296 0.83490 0.82577 0.84056
0.88070 0.87956 0.92547 0.88961 0.79684 0.94109 0.93817 0.91931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 8.90 71.98 0.64 -1.58 16
2 C -0.09 -1.93 2.31 -11.54 -0.03 -1.95 16
3 H 0.12 2.17 7.85 -2.39 -0.02 2.16 16
4 C 0.09 1.94 3.47 71.98 0.25 2.19 16
5 O -0.32 -6.86 9.67 -92.51 -0.89 -7.75 16
6 C 0.11 2.29 6.69 22.51 0.15 2.44 16
7 C -0.23 -4.67 9.04 22.37 0.20 -4.47 16
8 C -0.09 -1.50 10.04 22.26 0.22 -1.27 16
9 C -0.16 -2.21 10.04 22.28 0.22 -1.98 16
10 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16
11 C -0.16 -2.77 9.99 22.36 0.22 -2.55 16
12 C 0.53 15.37 7.22 87.66 0.63 16.01 16
13 O -0.59 -22.06 16.25 -3.02 -0.05 -22.11 16
14 N -0.61 -17.13 3.32 -811.34 -2.69 -19.82 16
15 C 0.10 2.13 5.14 86.93 0.45 2.58 16
16 C -0.15 -4.24 6.78 32.06 0.22 -4.02 16
17 C 0.17 6.01 3.61 46.18 0.17 6.17 16
18 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16
19 N -0.73 -35.53 5.22 -317.32 -1.66 -37.18 16
20 C -0.24 -12.64 9.96 84.04 0.84 -11.80 16
21 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16
22 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16
23 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16
24 Si 0.98 44.98 29.55 68.60 2.03 47.01 16
25 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16
26 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16
27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16
28 C 0.11 3.77 6.62 86.73 0.57 4.34 16
29 H 0.09 1.09 4.98 -2.39 -0.01 1.08 16
30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.09 1.18 7.82 -2.39 -0.02 1.16 16
32 H 0.06 1.50 7.65 -2.39 -0.02 1.49 16
33 H 0.06 1.45 7.49 -2.39 -0.02 1.43 16
34 H 0.12 2.61 6.30 -2.91 -0.02 2.59 16
35 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16
36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16
37 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16
38 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16
39 H 0.10 1.59 7.08 -2.39 -0.02 1.58 16
40 H 0.10 1.60 7.34 -2.39 -0.02 1.58 16
41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
42 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16
43 H 0.37 20.00 7.56 -92.71 -0.70 19.30 16
44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16
45 H 0.04 1.77 7.72 -2.38 -0.02 1.75 16
46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
Total: -1.00 -70.37 374.56 2.74 -67.62
By element:
Atomic # 1 Polarization: 31.44 SS G_CDS: 0.28 Total: 31.72 kcal
Atomic # 6 Polarization: -6.12 SS G_CDS: 5.45 Total: -0.67 kcal
Atomic # 7 Polarization: -111.75 SS G_CDS: -4.07 Total: -115.82 kcal
Atomic # 8 Polarization: -28.92 SS G_CDS: -0.94 Total: -29.86 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal
Total: -70.37 2.74 -67.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001187879921.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.116 kcal
(2) G-P(sol) polarization free energy of solvation -70.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds