Wall clock time and date at job start Tue Mar 31 2020 13:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47068 * 2 1 4 4 C 1.46897 * 111.00040 * 151.24431 * 3 2 1 5 5 C 1.50704 * 109.47083 * 293.95226 * 4 3 2 6 6 H 1.07996 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00165 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99965 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47089 * 89.99334 * 9 7 5 11 11 H 1.48502 * 109.47058 * 209.99542 * 9 7 5 12 12 H 1.48502 * 109.47263 * 329.99771 * 9 7 5 13 13 C 1.46902 * 110.99682 * 275.20052 * 3 2 1 14 14 C 1.50698 * 109.47178 * 76.70337 * 13 3 2 15 15 C 1.35378 * 126.97147 * 260.75801 * 14 13 3 16 16 C 1.50703 * 126.73660 * 359.97438 * 15 14 13 17 17 N 1.33770 * 106.53602 * 179.97438 * 15 14 13 18 18 N 1.28606 * 109.05941 * 0.02562 * 17 15 14 19 19 N 1.28731 * 110.23472 * 359.73643 * 18 17 15 20 20 C 1.40302 * 125.94031 * 180.25260 * 19 18 17 21 21 C 1.38818 * 120.03657 * 144.91723 * 20 19 18 22 22 C 1.38105 * 119.95647 * 179.79374 * 21 20 19 23 23 C 1.38486 * 120.04379 * 0.47827 * 22 21 20 24 24 F 1.35096 * 119.96453 * 179.72708 * 23 22 21 25 25 C 1.38484 * 120.07401 * 359.75023 * 23 22 21 26 26 C 1.38106 * 120.04397 * 0.02562 * 25 23 22 27 27 H 1.08994 * 109.47060 * 307.33149 * 1 2 3 28 28 H 1.09001 * 109.46877 * 67.33345 * 1 2 3 29 29 H 1.09002 * 109.46374 * 187.32638 * 1 2 3 30 30 H 1.09006 * 109.47393 * 240.00125 * 2 1 3 31 31 H 1.09001 * 109.47198 * 119.99845 * 2 1 3 32 32 H 1.09000 * 109.47158 * 53.95663 * 4 3 2 33 33 H 1.09004 * 109.46825 * 173.95682 * 4 3 2 34 34 H 0.96998 * 120.00556 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46467 * 196.69950 * 13 3 2 36 36 H 1.08993 * 109.46993 * 316.69491 * 13 3 2 37 37 H 1.09002 * 109.47094 * 95.31787 * 16 15 14 38 38 H 1.08993 * 109.47186 * 215.32365 * 16 15 14 39 39 H 1.09000 * 109.46295 * 335.32779 * 16 15 14 40 40 H 1.07999 * 120.02200 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.97823 * 180.20700 * 22 21 20 42 42 H 1.08001 * 119.97741 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.02323 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.3287 1.4806 0.6597 5 6 3.1788 1.1534 2.1232 6 1 2.2082 0.8994 2.5230 7 6 4.2808 1.1773 2.9514 8 7 4.1501 0.8913 4.2283 9 14 5.9597 1.6159 2.2596 10 1 6.1661 3.0835 2.3544 11 1 7.0137 0.9165 3.0375 12 1 6.0338 1.1966 0.8369 13 6 2.0780 1.9228 -1.3658 14 6 0.6879 2.2815 -1.8242 15 6 -0.1237 1.5435 -2.6174 16 6 0.1854 0.1967 -3.2190 17 7 -1.2540 2.2441 -2.7626 18 7 -1.1533 3.3446 -2.1048 19 7 -0.0082 3.4109 -1.5204 20 6 0.4447 4.4655 -0.7134 21 6 1.2535 4.2030 0.3838 22 6 1.7019 5.2427 1.1745 23 6 1.3369 6.5456 0.8793 24 9 1.7719 7.5609 1.6571 25 6 0.5262 6.8088 -0.2121 26 6 0.0797 5.7720 -1.0079 27 1 -0.3633 0.6232 0.8171 28 1 -0.3633 0.3960 -0.9483 29 1 -0.3632 -1.0193 0.1311 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.0203 0.7755 0.1987 33 1 3.7168 2.4935 0.5519 34 1 4.9253 0.9084 4.8111 35 1 2.7061 2.8135 -1.3790 36 1 2.4985 1.1716 -2.0343 37 1 -0.2167 -0.5883 -2.5784 38 1 -0.2688 0.1274 -4.2073 39 1 1.2653 0.0770 -3.3060 40 1 1.5344 3.1866 0.6172 41 1 2.3339 5.0391 2.0263 42 1 0.2428 7.8255 -0.4412 43 1 -0.5522 5.9778 -1.8592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249448896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:25 Heat of formation + Delta-G solvation = 99.221980 kcal Electronic energy + Delta-G solvation = -27638.407538 eV Core-core repulsion = 23829.196941 eV Total energy + Delta-G solvation = -3809.210597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.95673 -43.39309 -39.13303 -37.61290 -34.64679 -33.21049 -32.25142 -31.37726 -30.58839 -29.73084 -28.50059 -27.07066 -25.01194 -23.76251 -23.20014 -22.44484 -20.93511 -20.85305 -20.03158 -18.04156 -17.56172 -17.06580 -16.73442 -15.98513 -15.63045 -15.20409 -15.03991 -14.66511 -14.34179 -14.03973 -13.89010 -13.67315 -13.60121 -13.25069 -13.13623 -12.77908 -12.54844 -12.54204 -12.40589 -12.28027 -11.90287 -11.61593 -11.34858 -11.23446 -11.07825 -10.87634 -10.68014 -10.51043 -10.38852 -10.28306 -10.05361 -9.49545 -9.23166 -8.77425 -8.71059 -8.50356 -7.79094 -6.21072 -4.21085 0.60757 1.11827 1.85511 2.37090 2.58122 3.15459 3.23622 3.25662 3.43384 4.14137 4.26254 4.34842 4.44446 4.61125 4.74077 4.79969 4.96969 4.98452 5.09997 5.12862 5.26489 5.53629 5.56386 5.58396 5.68411 5.76792 5.77414 5.82950 5.89410 5.96400 5.97400 6.02439 6.21562 6.23861 6.33989 6.44116 6.47116 6.59922 6.63129 6.73601 6.82230 6.98772 7.33706 7.58844 7.73904 8.42692 8.58980 8.87425 9.38811 10.91240 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.006569 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.806000 B = 4261.368443 C = 6673.968152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.057 3.943 3 N -0.527 5.527 4 C 0.157 3.843 5 C -0.517 4.517 6 H 0.084 0.916 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.110 3.890 14 C 0.018 3.982 15 C -0.018 4.018 16 C -0.068 4.068 17 N -0.265 5.265 18 N -0.088 5.088 19 N -0.230 5.230 20 C 0.099 3.901 21 C -0.080 4.080 22 C -0.133 4.133 23 C 0.109 3.891 24 F -0.136 7.136 25 C -0.151 4.151 26 C -0.073 4.073 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.093 0.907 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.199 0.801 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 5.537 -11.982 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.031 3.969 5 C -0.555 4.555 6 H 0.102 0.898 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.020 4.020 14 C -0.113 4.113 15 C -0.156 4.156 16 C -0.126 4.126 17 N -0.132 5.132 18 N -0.065 5.065 19 N -0.018 5.018 20 C 0.008 3.992 21 C -0.100 4.100 22 C -0.152 4.152 23 C 0.089 3.911 24 F -0.114 7.114 25 C -0.171 4.171 26 C -0.093 4.093 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.014 0.986 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.215 0.785 41 H 0.171 0.829 42 H 0.161 0.839 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.759 6.512 -11.782 14.642 hybrid contribution 2.513 -0.324 -0.170 2.540 sum -3.246 6.188 -11.952 13.845 Atomic orbital electron populations 1.22154 0.96243 1.00781 1.02607 1.22105 0.94960 0.88335 1.01623 1.61826 1.29871 1.20946 1.12557 1.20335 0.84553 0.96184 0.95782 1.20937 0.96919 1.47507 0.90128 0.89844 1.24859 0.98575 0.94736 0.94668 1.69872 1.30655 1.48461 1.04064 0.86965 0.84745 0.79111 0.79582 1.20020 1.21080 1.19175 1.20705 0.88177 1.00895 0.92219 1.22171 0.98601 0.88415 1.02101 1.21564 0.91541 0.99593 1.02917 1.20207 1.02070 0.89735 1.00621 1.74976 1.21248 0.99823 1.17144 1.78316 1.01602 1.16695 1.09885 1.44350 1.11121 1.14120 1.32196 1.17636 1.02352 0.85347 0.93859 1.22423 0.93064 1.04615 0.89919 1.21282 1.02075 0.89905 1.01966 1.17945 0.97202 0.84970 0.90965 1.91515 1.87841 1.58595 1.73456 1.20911 1.00364 1.00392 0.95412 1.20782 0.98938 0.89642 0.99910 0.92588 0.92110 0.93233 0.95192 0.88873 0.98569 0.95610 0.92442 0.89785 0.91498 0.90189 0.90765 0.90822 0.78467 0.82850 0.83880 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.28 37.16 0.34 -2.18 16 2 C 0.06 0.95 5.52 -3.82 -0.02 0.93 16 3 N -0.53 -9.21 2.20 -237.50 -0.52 -9.74 16 4 C 0.16 3.21 3.06 -4.98 -0.02 3.20 16 5 C -0.52 -12.89 8.70 -34.44 -0.30 -13.19 16 6 H 0.08 2.32 7.70 -52.49 -0.40 1.91 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 9 Si 0.87 19.53 27.47 -169.99 -4.67 14.86 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 13 C 0.11 1.63 4.27 -4.98 -0.02 1.61 16 14 C 0.02 0.27 5.11 -81.72 -0.42 -0.15 16 15 C -0.02 -0.27 5.09 -82.77 -0.42 -0.69 16 16 C -0.07 -0.75 9.90 36.01 0.36 -0.40 16 17 N -0.27 -4.44 12.39 33.29 0.41 -4.03 16 18 N -0.09 -1.50 12.84 60.35 0.78 -0.72 16 19 N -0.23 -3.69 3.51 -6.77 -0.02 -3.71 16 20 C 0.10 1.48 6.32 -83.55 -0.53 0.95 16 21 C -0.08 -1.27 8.60 -39.42 -0.34 -1.61 16 22 C -0.13 -1.96 10.02 -39.54 -0.40 -2.36 16 23 C 0.11 1.45 7.30 -39.40 -0.29 1.16 16 24 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 25 C -0.15 -1.74 10.02 -39.54 -0.40 -2.13 16 26 C -0.07 -0.91 9.71 -39.42 -0.38 -1.30 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.93 2.75 -51.93 -0.14 0.79 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.44 7.54 -51.93 -0.39 0.05 16 31 H 0.09 1.79 6.61 -51.93 -0.34 1.45 16 32 H 0.00 -0.07 7.18 -51.93 -0.37 -0.44 16 33 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 1.21 7.20 -51.93 -0.37 0.84 16 36 H 0.07 0.87 6.47 -51.93 -0.34 0.54 16 37 H 0.08 0.86 6.90 -51.93 -0.36 0.50 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.71 7.03 -51.93 -0.36 0.35 16 40 H 0.20 3.53 3.75 -52.49 -0.20 3.34 16 41 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.14 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -28.40 345.94 -6.28 -34.68 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.36 Total: 4.11 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -2.92 Total: -14.30 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 1.41 Total: -42.77 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.40 -6.28 -34.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249448896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.905 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds