Wall clock time and date at job start Tue Mar 31 2020 13:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47068 * 2 1 4 4 C 1.46897 * 111.00040 * 151.24431 * 3 2 1 5 5 C 1.50704 * 109.47083 * 293.95226 * 4 3 2 6 6 H 1.07996 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00165 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99965 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47089 * 89.99334 * 9 7 5 11 11 H 1.48502 * 109.47058 * 209.99542 * 9 7 5 12 12 H 1.48502 * 109.47263 * 329.99771 * 9 7 5 13 13 C 1.46902 * 110.99682 * 275.20052 * 3 2 1 14 14 C 1.50698 * 109.47178 * 76.70337 * 13 3 2 15 15 C 1.35378 * 126.97147 * 260.75801 * 14 13 3 16 16 C 1.50703 * 126.73660 * 359.97438 * 15 14 13 17 17 N 1.33770 * 106.53602 * 179.97438 * 15 14 13 18 18 N 1.28606 * 109.05941 * 0.02562 * 17 15 14 19 19 N 1.28731 * 110.23472 * 359.73643 * 18 17 15 20 20 C 1.40302 * 125.94031 * 180.25260 * 19 18 17 21 21 C 1.38818 * 120.03657 * 144.91723 * 20 19 18 22 22 C 1.38105 * 119.95647 * 179.79374 * 21 20 19 23 23 C 1.38486 * 120.04379 * 0.47827 * 22 21 20 24 24 F 1.35096 * 119.96453 * 179.72708 * 23 22 21 25 25 C 1.38484 * 120.07401 * 359.75023 * 23 22 21 26 26 C 1.38106 * 120.04397 * 0.02562 * 25 23 22 27 27 H 1.08994 * 109.47060 * 307.33149 * 1 2 3 28 28 H 1.09001 * 109.46877 * 67.33345 * 1 2 3 29 29 H 1.09002 * 109.46374 * 187.32638 * 1 2 3 30 30 H 1.09006 * 109.47393 * 240.00125 * 2 1 3 31 31 H 1.09001 * 109.47198 * 119.99845 * 2 1 3 32 32 H 1.09000 * 109.47158 * 53.95663 * 4 3 2 33 33 H 1.09004 * 109.46825 * 173.95682 * 4 3 2 34 34 H 0.96998 * 120.00556 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46467 * 196.69950 * 13 3 2 36 36 H 1.08993 * 109.46993 * 316.69491 * 13 3 2 37 37 H 1.09002 * 109.47094 * 95.31787 * 16 15 14 38 38 H 1.08993 * 109.47186 * 215.32365 * 16 15 14 39 39 H 1.09000 * 109.46295 * 335.32779 * 16 15 14 40 40 H 1.07999 * 120.02200 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.97823 * 180.20700 * 22 21 20 42 42 H 1.08001 * 119.97741 * 180.02562 * 25 23 22 43 43 H 1.07999 * 120.02323 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.3287 1.4806 0.6597 5 6 3.1788 1.1534 2.1232 6 1 2.2082 0.8994 2.5230 7 6 4.2808 1.1773 2.9514 8 7 4.1501 0.8913 4.2283 9 14 5.9597 1.6159 2.2596 10 1 6.1661 3.0835 2.3544 11 1 7.0137 0.9165 3.0375 12 1 6.0338 1.1966 0.8369 13 6 2.0780 1.9228 -1.3658 14 6 0.6879 2.2815 -1.8242 15 6 -0.1237 1.5435 -2.6174 16 6 0.1854 0.1967 -3.2190 17 7 -1.2540 2.2441 -2.7626 18 7 -1.1533 3.3446 -2.1048 19 7 -0.0082 3.4109 -1.5204 20 6 0.4447 4.4655 -0.7134 21 6 1.2535 4.2030 0.3838 22 6 1.7019 5.2427 1.1745 23 6 1.3369 6.5456 0.8793 24 9 1.7719 7.5609 1.6571 25 6 0.5262 6.8088 -0.2121 26 6 0.0797 5.7720 -1.0079 27 1 -0.3633 0.6232 0.8171 28 1 -0.3633 0.3960 -0.9483 29 1 -0.3632 -1.0193 0.1311 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.0203 0.7755 0.1987 33 1 3.7168 2.4935 0.5519 34 1 4.9253 0.9084 4.8111 35 1 2.7061 2.8135 -1.3790 36 1 2.4985 1.1716 -2.0343 37 1 -0.2167 -0.5883 -2.5784 38 1 -0.2688 0.1274 -4.2073 39 1 1.2653 0.0770 -3.3060 40 1 1.5344 3.1866 0.6172 41 1 2.3339 5.0391 2.0263 42 1 0.2428 7.8255 -0.4412 43 1 -0.5522 5.9778 -1.8592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249448896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:24 Heat of formation + Delta-G solvation = 83.510453 kcal Electronic energy + Delta-G solvation = -27639.088841 eV Core-core repulsion = 23829.196941 eV Total energy + Delta-G solvation = -3809.891900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.03331 -44.57354 -40.23211 -38.99443 -35.77788 -34.91787 -33.70035 -32.51180 -31.88575 -30.93595 -29.89855 -28.31108 -26.38573 -24.90157 -24.34854 -23.97433 -22.27344 -22.04659 -21.31730 -19.26086 -18.83244 -18.66515 -17.95237 -17.14618 -16.71613 -16.67774 -16.36457 -16.05353 -15.69882 -15.40922 -15.01259 -14.80564 -14.60814 -14.51908 -14.38113 -14.26946 -14.07681 -13.70943 -13.48519 -13.32376 -13.14979 -12.95848 -12.81043 -12.64532 -12.42645 -12.21535 -12.11854 -11.92998 -11.76121 -11.60963 -11.52857 -11.41858 -10.74752 -10.30606 -9.93025 -9.61846 -9.16357 -8.23762 -6.27186 -0.51424 0.05412 0.68577 1.23978 1.38565 1.40321 1.41516 1.49021 2.34053 2.36966 3.03991 3.10211 3.12850 3.27785 3.54024 3.68796 3.74258 3.83528 3.92822 4.04374 4.20577 4.25649 4.41254 4.48906 4.54521 4.63626 4.75167 4.78135 4.81004 4.82720 4.88044 4.91597 4.92467 4.99704 5.05943 5.15587 5.24093 5.27991 5.35288 5.46152 5.48750 5.55012 5.83228 5.96745 6.27708 6.57218 6.81124 7.36217 7.39075 8.92303 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.006569 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.806000 B = 4261.368443 C = 6673.968152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 N -0.538 5.538 4 C 0.169 3.831 5 C -0.507 4.507 6 H 0.039 0.961 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.242 1.242 13 C 0.114 3.886 14 C 0.008 3.992 15 C -0.013 4.013 16 C -0.070 4.070 17 N -0.286 5.286 18 N -0.107 5.107 19 N -0.231 5.231 20 C 0.085 3.915 21 C -0.095 4.095 22 C -0.144 4.144 23 C 0.109 3.891 24 F -0.136 7.136 25 C -0.130 4.130 26 C -0.065 4.065 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.003 0.997 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.177 0.823 41 H 0.142 0.858 42 H 0.180 0.820 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 6.445 -14.935 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 N -0.262 5.262 4 C 0.043 3.957 5 C -0.546 4.546 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.759 3.241 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.165 1.165 13 C -0.016 4.016 14 C -0.123 4.123 15 C -0.152 4.152 16 C -0.129 4.129 17 N -0.152 5.152 18 N -0.083 5.083 19 N -0.019 5.019 20 C -0.005 4.005 21 C -0.116 4.116 22 C -0.164 4.164 23 C 0.089 3.911 24 F -0.115 7.115 25 C -0.149 4.149 26 C -0.085 4.085 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.194 0.806 41 H 0.159 0.841 42 H 0.198 0.802 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.200 7.426 -14.768 17.329 hybrid contribution 2.201 -0.593 0.772 2.407 sum -2.999 6.833 -13.996 15.861 Atomic orbital electron populations 1.22067 0.95683 1.01220 1.01737 1.22048 0.95308 0.88008 1.01341 1.61679 1.28257 1.21558 1.14731 1.20055 0.86199 0.96440 0.93012 1.21130 0.94886 1.45840 0.92732 0.94292 1.25717 1.02876 0.94954 0.94767 1.70043 1.31773 1.51055 1.05865 0.85901 0.79275 0.79000 0.79930 1.19253 1.21681 1.16545 1.20742 0.88327 1.01685 0.90819 1.22334 0.98889 0.88547 1.02554 1.22144 0.90495 1.00419 1.02104 1.20395 1.03576 0.87680 1.01215 1.74957 1.22292 1.00210 1.17777 1.78270 1.02089 1.17267 1.10682 1.44486 1.10979 1.14545 1.31908 1.17808 1.02717 0.86182 0.93810 1.22160 0.94530 1.03821 0.91050 1.21194 1.02604 0.90790 1.01805 1.17983 0.97415 0.84228 0.91464 1.91516 1.87919 1.58412 1.73639 1.21235 0.98264 1.01818 0.93591 1.21012 0.98440 0.88730 1.00297 0.95733 0.91179 0.91525 0.92147 0.92244 0.97966 0.94687 0.92649 0.89318 0.88796 0.89619 0.89342 0.88866 0.80630 0.84052 0.80228 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.28 71.98 0.67 -4.00 16 2 C 0.06 1.97 5.52 86.30 0.48 2.45 16 3 N -0.54 -18.48 2.20 -905.32 -1.99 -20.47 16 4 C 0.17 6.82 3.06 85.56 0.26 7.08 16 5 C -0.51 -26.15 8.70 25.60 0.22 -25.93 16 6 H 0.04 2.31 7.70 -2.91 -0.02 2.28 16 7 C 0.01 0.78 5.47 84.66 0.46 1.24 16 8 N -0.95 -56.02 13.96 21.45 0.30 -55.72 16 9 Si 0.93 40.15 27.47 68.60 1.88 42.03 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 13 C 0.11 3.12 4.27 85.56 0.37 3.49 16 14 C 0.01 0.22 5.11 41.24 0.21 0.43 16 15 C -0.01 -0.36 5.09 41.60 0.21 -0.15 16 16 C -0.07 -1.33 9.90 71.24 0.71 -0.63 16 17 N -0.29 -9.19 12.39 -48.58 -0.60 -9.79 16 18 N -0.11 -3.51 12.84 37.02 0.48 -3.04 16 19 N -0.23 -7.16 3.51 -175.32 -0.61 -7.78 16 20 C 0.09 2.48 6.32 38.06 0.24 2.72 16 21 C -0.10 -3.03 8.60 22.38 0.19 -2.84 16 22 C -0.14 -4.28 10.02 22.30 0.22 -4.06 16 23 C 0.11 2.73 7.30 22.39 0.16 2.90 16 24 F -0.14 -3.49 17.27 44.97 0.78 -2.72 16 25 C -0.13 -2.61 10.02 22.30 0.22 -2.39 16 26 C -0.07 -1.49 9.71 22.38 0.22 -1.27 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 2.05 2.75 -2.39 -0.01 2.05 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.60 7.54 -2.38 -0.02 1.58 16 31 H 0.06 2.35 6.61 -2.39 -0.02 2.33 16 32 H 0.00 0.10 7.18 -2.39 -0.02 0.08 16 33 H 0.04 1.37 7.18 -2.38 -0.02 1.35 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.09 2.37 7.20 -2.38 -0.02 2.35 16 36 H 0.09 2.08 6.47 -2.39 -0.02 2.06 16 37 H 0.09 1.56 6.90 -2.39 -0.02 1.54 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.40 7.03 -2.39 -0.02 1.38 16 40 H 0.18 6.44 3.75 -2.91 -0.01 6.43 16 41 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.16 3.11 8.03 -2.91 -0.02 3.09 16 Total: -1.00 -64.27 345.94 6.06 -58.21 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.99 Total: 20.23 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.85 Total: -20.96 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -2.43 Total: -96.80 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.88 Total: 42.03 kcal Total: -64.27 6.06 -58.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249448896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.718 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds