Wall clock time and date at job start Tue Mar 31 2020 12:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.47323 * 2 1 4 4 C 1.52999 * 109.47149 * 120.00093 * 2 1 3 5 5 C 1.50702 * 109.47300 * 184.99921 * 4 2 1 6 6 C 1.38256 * 120.00097 * 257.30158 * 5 4 2 7 7 C 1.38218 * 120.00090 * 179.97438 * 6 5 4 8 8 C 1.38253 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.38212 * 120.00096 * 359.97438 * 8 7 6 10 10 C 1.38213 * 119.99850 * 77.27589 * 5 4 2 11 11 N 1.48017 * 120.00316 * 359.97438 * 10 5 4 12 12 O 1.21795 * 120.00482 * 185.71634 * 11 10 5 13 13 O 1.21799 * 119.99825 * 5.71515 * 11 10 5 14 14 N 1.46905 * 109.47171 * 239.99935 * 2 1 3 15 15 C 1.46898 * 110.99925 * 85.00081 * 14 2 1 16 16 H 1.09003 * 109.41395 * 325.00127 * 15 14 2 17 17 C 1.52961 * 109.41506 * 84.86195 * 15 14 2 18 18 C 1.53239 * 109.40226 * 183.77622 * 17 15 14 19 19 C 1.51268 * 108.48109 * 305.26540 * 18 17 15 20 20 C 1.37875 * 120.84932 * 231.37045 * 19 18 17 21 21 N 1.31516 * 120.00287 * 180.02562 * 20 19 18 22 22 Si 1.86801 * 119.99856 * 0.02562 * 20 19 18 23 23 H 1.48500 * 109.46982 * 90.00437 * 22 20 19 24 24 H 1.48508 * 109.47093 * 210.00480 * 22 20 19 25 25 H 1.48497 * 109.47392 * 330.00278 * 22 20 19 26 26 C 1.51268 * 118.30059 * 51.38345 * 19 18 17 27 27 C 1.52957 * 109.41270 * 205.14164 * 15 14 2 28 28 H 1.09005 * 109.47323 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47218 * 300.00332 * 1 2 3 30 30 H 1.09001 * 109.47224 * 60.00287 * 1 2 3 31 31 H 1.08999 * 109.47150 * 64.99875 * 4 2 1 32 32 H 1.08997 * 109.46921 * 304.99911 * 4 2 1 33 33 H 1.07997 * 120.00253 * 359.97110 * 6 5 4 34 34 H 1.08000 * 120.00011 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.00091 * 179.69849 * 8 7 6 36 36 H 1.08005 * 120.00284 * 179.97438 * 9 8 7 37 37 H 1.00904 * 110.99933 * 208.95313 * 14 2 1 38 38 H 1.09004 * 109.47924 * 303.68219 * 17 15 14 39 39 H 1.08994 * 109.48466 * 63.71690 * 17 15 14 40 40 H 1.08993 * 109.62335 * 185.58657 * 18 17 15 41 41 H 1.09005 * 109.84538 * 65.07191 * 18 17 15 42 42 H 0.96997 * 120.00222 * 179.97438 * 21 20 19 43 43 H 1.09010 * 109.62493 * 188.93873 * 26 19 18 44 44 H 1.08998 * 109.62605 * 68.37311 * 26 19 18 45 45 H 1.09003 * 109.48569 * 296.27266 * 27 15 14 46 46 H 1.08998 * 109.48241 * 56.30262 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.3271 -1.6951 0.9547 7 6 5.7046 -1.5974 1.0124 8 6 6.2972 -0.4198 1.4287 9 6 5.5122 0.6600 1.7867 10 6 4.1343 0.5625 1.7284 11 7 3.2937 1.7193 2.1107 12 8 3.8132 2.7883 2.3766 13 8 2.0823 1.6022 2.1593 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 1 1.2572 0.9325 -2.2898 17 6 3.4096 0.9824 -2.3192 18 6 3.4353 2.0039 -3.4612 19 6 3.1611 1.2782 -4.7598 20 6 3.9972 1.4311 -5.8454 21 7 3.7426 0.7926 -6.9666 22 14 5.4917 2.5452 -5.7236 23 1 6.6585 1.7581 -5.2501 24 1 5.7913 3.1194 -7.0600 25 1 5.2133 3.6437 -4.7640 26 6 1.9458 0.3808 -4.8371 27 6 1.9733 -0.5805 -3.6441 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7515 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1369 33 1 3.8642 -2.6152 0.6299 34 1 6.3179 -2.4413 0.7331 35 1 7.3734 -0.3450 1.4785 36 1 5.9752 1.5799 2.1123 37 1 2.9173 -1.1205 -1.0287 38 1 3.5114 1.5016 -1.3661 39 1 4.2337 0.2793 -2.4401 40 1 4.4159 2.4776 -3.5066 41 1 2.6697 2.7621 -3.2968 42 1 4.3307 0.9004 -7.7305 43 1 1.9694 -0.1883 -5.7665 44 1 1.0404 0.9864 -4.7984 45 1 2.8322 -1.2458 -3.7332 46 1 1.0566 -1.1700 -3.6308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254537515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:02 Heat of formation + Delta-G solvation = 6.220388 kcal Electronic energy + Delta-G solvation = -28162.075364 eV Core-core repulsion = 24439.999469 eV Total energy + Delta-G solvation = -3722.075895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32878 -39.87255 -38.04648 -36.71530 -35.48644 -32.94072 -32.13307 -31.64663 -29.87276 -29.49740 -27.38662 -26.31366 -25.88062 -22.90929 -22.47070 -21.84879 -21.24205 -20.27365 -19.37174 -19.05243 -18.59708 -17.54409 -16.57229 -16.22483 -16.01172 -15.11682 -15.03904 -14.85969 -14.40324 -14.14757 -13.58930 -13.10424 -12.97904 -12.84744 -12.66380 -12.47254 -12.24839 -12.15454 -11.97693 -11.86874 -11.44442 -11.40833 -11.28580 -11.08602 -11.01455 -10.93395 -10.76614 -10.57020 -10.37830 -10.12541 -9.84026 -9.78602 -9.61113 -9.35404 -8.87691 -8.75285 -8.46542 -7.83166 -6.09577 -3.99674 -0.24757 0.68740 1.25408 1.37915 3.04294 3.23673 3.33197 3.35651 4.09325 4.13851 4.37431 4.39620 4.53666 4.64918 4.71980 4.90973 5.01861 5.17208 5.24612 5.29213 5.48666 5.60870 5.62991 5.75175 5.79876 5.82519 5.88975 5.93250 6.05566 6.08803 6.15358 6.24704 6.43793 6.47702 6.49967 6.71611 6.79144 6.87624 6.93863 7.02835 7.20678 7.38901 7.57988 7.64240 7.66225 7.72729 7.87751 7.91384 8.41740 8.98502 9.55317 10.99989 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.004649 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.735406 B = 6021.926519 C = 6671.663739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.095 3.905 3 H 0.042 0.958 4 C -0.104 4.104 5 C -0.012 4.012 6 C -0.120 4.120 7 C -0.062 4.062 8 C -0.125 4.125 9 C -0.053 4.053 10 C -0.045 4.045 11 N 0.033 4.967 12 O -0.173 6.173 13 O -0.150 6.150 14 N -0.687 5.687 15 C 0.100 3.900 16 H 0.066 0.934 17 C -0.128 4.128 18 C -0.011 4.011 19 C -0.485 4.485 20 C 0.075 3.925 21 N -0.889 5.889 22 Si 0.885 3.115 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.009 3.991 27 C -0.091 4.091 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.329 0.671 38 H 0.016 0.984 39 H 0.048 0.952 40 H 0.026 0.974 41 H 0.016 0.984 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.002 0.998 45 H 0.045 0.955 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -6.316 18.822 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 H 0.060 0.940 4 C -0.141 4.141 5 C -0.013 4.013 6 C -0.139 4.139 7 C -0.080 4.080 8 C -0.144 4.144 9 C -0.073 4.073 10 C -0.128 4.128 11 N 0.550 4.450 12 O -0.385 6.385 13 O -0.366 6.366 14 N -0.318 5.318 15 C -0.009 4.009 16 H 0.084 0.916 17 C -0.167 4.167 18 C -0.049 4.049 19 C -0.504 4.504 20 C -0.127 4.127 21 N -0.527 5.527 22 Si 0.713 3.287 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.193 1.193 26 C -0.029 4.029 27 C -0.129 4.129 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.021 0.979 45 H 0.063 0.937 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.448 -7.130 18.291 19.784 hybrid contribution 1.710 1.500 0.283 2.292 sum 4.158 -5.630 18.574 19.849 Atomic orbital electron populations 1.21713 0.93795 1.01962 1.01608 1.21376 0.96441 0.95790 0.87899 0.93971 1.21379 0.88027 1.03335 1.01371 1.20011 0.98403 0.90598 0.92302 1.21277 0.93503 0.98665 1.00417 1.21658 0.95043 0.97981 0.93292 1.21203 1.00798 0.92272 1.00099 1.21068 0.90452 1.00578 0.95156 1.20979 0.91255 0.87780 1.12780 1.43546 1.01413 1.02041 0.97966 1.94535 1.76583 1.14791 1.52584 1.94474 0.96513 1.89766 1.55889 1.60965 1.32560 1.33925 1.04322 1.21520 0.96535 0.92788 0.90075 0.91551 1.22175 0.97749 0.99439 0.97385 1.19683 0.96746 0.94271 0.94244 1.20033 1.09530 1.25916 0.94910 1.24826 0.97401 0.95438 0.95013 1.69834 1.38203 1.42072 1.02629 0.86714 0.83284 0.81633 0.77050 1.20604 1.21524 1.19334 1.19393 0.94684 0.94201 0.94630 1.21557 0.98975 0.97965 0.94448 0.92277 0.92322 0.92414 0.89448 0.87190 0.83267 0.83914 0.83709 0.83168 0.85263 0.96481 0.93281 0.95541 0.96596 0.92651 0.92416 0.97912 0.93652 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.40 37.15 0.35 -1.43 16 2 C 0.09 1.36 1.84 -67.72 -0.12 1.24 16 3 H 0.04 0.72 5.59 -51.93 -0.29 0.43 16 4 C -0.10 -1.20 4.23 -27.88 -0.12 -1.32 16 5 C -0.01 -0.13 4.52 -104.62 -0.47 -0.61 16 6 C -0.12 -1.10 8.49 -39.58 -0.34 -1.43 16 7 C -0.06 -0.48 10.05 -39.58 -0.40 -0.88 16 8 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 9 C -0.05 -0.56 9.56 -39.58 -0.38 -0.94 16 10 C -0.04 -0.57 6.74 -79.95 -0.54 -1.11 16 11 N 0.03 0.49 4.33 33.96 0.15 0.64 16 12 O -0.17 -2.73 18.46 -29.46 -0.54 -3.27 16 13 O -0.15 -2.27 13.69 -29.46 -0.40 -2.67 16 14 N -0.69 -10.99 6.05 -99.78 -0.60 -11.59 16 15 C 0.10 1.95 2.18 -67.76 -0.15 1.81 16 16 H 0.07 1.38 7.11 -51.93 -0.37 1.01 16 17 C -0.13 -2.69 5.17 -26.63 -0.14 -2.83 16 18 C -0.01 -0.27 5.60 -27.48 -0.15 -0.43 16 19 C -0.48 -12.99 5.51 -98.92 -0.55 -13.53 16 20 C 0.08 2.09 5.46 -17.82 -0.10 2.00 16 21 N -0.89 -25.82 12.73 55.43 0.71 -25.11 16 22 Si 0.88 21.50 27.27 -169.99 -4.64 16.87 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.42 6.46 56.52 0.37 -6.05 16 26 C 0.01 0.22 5.97 -27.49 -0.16 0.06 16 27 C -0.09 -1.97 5.54 -26.64 -0.15 -2.12 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.85 7.42 -51.93 -0.39 0.46 16 31 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.11 1.27 5.92 -51.93 -0.31 0.96 16 33 H 0.15 1.09 8.02 -52.49 -0.42 0.66 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.15 1.42 7.62 -52.48 -0.40 1.02 16 37 H 0.33 4.99 6.22 -39.29 -0.24 4.75 16 38 H 0.02 0.34 7.37 -51.93 -0.38 -0.04 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.03 0.64 4.78 -51.93 -0.25 0.39 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.06 1.60 7.07 -51.92 -0.37 1.23 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -30.44 360.02 -10.52 -40.96 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.81 Total: 1.70 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -3.81 Total: -22.94 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.25 Total: -36.07 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.95 Total: -5.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.64 Total: 16.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.44 -10.52 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254537515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.182 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds