Wall clock time and date at job start Tue Mar 31 2020 12:48:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46497 * 109.47076 * 2 1
4 4 C 1.46495 * 120.00089 * 90.00188 * 3 2 1
5 5 C 1.53007 * 109.47572 * 89.99760 * 4 3 2
6 6 C 1.52989 * 109.47232 * 180.02562 * 5 4 3
7 7 C 1.53004 * 117.50035 * 243.74470 * 6 5 4
8 8 C 1.53004 * 117.49812 * 175.08545 * 6 5 4
9 9 C 1.34781 * 119.99778 * 269.99636 * 3 2 1
10 10 O 1.21585 * 119.99890 * 180.02562 * 9 3 2
11 11 N 1.34774 * 120.00013 * 0.02562 * 9 3 2
12 12 C 1.40027 * 119.99923 * 175.51868 * 11 9 3
13 13 C 1.38913 * 119.99991 * 214.84922 * 12 11 9
14 14 C 1.38006 * 119.99834 * 179.81024 * 13 12 11
15 15 C 1.38905 * 120.00221 * 0.44223 * 14 13 12
16 16 O 1.35781 * 120.00171 * 179.76873 * 15 14 13
17 17 C 1.34813 * 116.99862 * 185.36142 * 16 15 14
18 18 H 1.07995 * 120.00274 * 354.96198 * 17 16 15
19 19 C 1.38629 * 119.99678 * 174.96441 * 17 16 15
20 20 N 1.31578 * 120.00195 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99972 * 179.97438 * 19 17 16
22 22 H 1.48504 * 109.47139 * 89.99938 * 21 19 17
23 23 H 1.48499 * 109.47126 * 209.99681 * 21 19 17
24 24 H 1.48502 * 109.47037 * 329.99692 * 21 19 17
25 25 C 1.38908 * 120.00148 * 359.78953 * 15 14 13
26 26 C 1.38008 * 119.99934 * 359.97438 * 25 15 14
27 27 H 1.08999 * 109.47095 * 59.99772 * 1 2 3
28 28 H 1.08998 * 109.47284 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.47238 * 300.00756 * 1 2 3
30 30 H 1.08997 * 109.46973 * 239.99976 * 2 1 3
31 31 H 1.09002 * 109.46938 * 119.99733 * 2 1 3
32 32 H 1.09000 * 109.47503 * 329.99207 * 4 3 2
33 33 H 1.09008 * 109.47262 * 209.99638 * 4 3 2
34 34 H 1.09000 * 109.46883 * 300.00482 * 5 4 3
35 35 H 1.09005 * 109.46513 * 59.99515 * 5 4 3
36 36 H 1.09004 * 115.55522 * 29.41239 * 6 5 4
37 37 H 1.08999 * 117.49498 * 0.02562 * 7 6 5
38 38 H 1.08996 * 117.50142 * 145.02113 * 7 6 5
39 39 H 1.08999 * 117.50008 * 214.97558 * 8 6 5
40 40 H 1.09000 * 117.49522 * 0.02562 * 8 6 5
41 41 H 0.96995 * 120.00036 * 355.51845 * 11 9 3
42 42 H 1.07998 * 120.00137 * 0.02562 * 13 12 11
43 43 H 1.07998 * 120.00351 * 180.18401 * 14 13 12
44 44 H 0.96998 * 119.99784 * 180.02562 * 20 19 17
45 45 H 1.07992 * 120.00093 * 179.97438 * 25 15 14
46 46 H 1.07999 * 119.99898 * 179.97438 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0718 1.2687
5 6 3.7076 1.8314 1.7104
6 6 3.9623 2.5521 3.0357
7 6 4.9973 3.6789 3.0395
8 6 5.3213 2.3394 3.7057
9 6 2.2430 2.0165 -1.1673
10 8 2.6487 3.1626 -1.1673
11 7 2.0180 1.3813 -2.3344
12 6 2.1610 2.0699 -3.5452
13 6 1.3218 1.7787 -4.6132
14 6 1.4602 2.4602 -5.8053
15 6 2.4447 3.4308 -5.9402
16 8 2.5840 4.0979 -7.1146
17 6 3.6268 4.9462 -7.2166
18 1 4.2577 5.1319 -6.3600
19 6 3.8892 5.5802 -8.4212
20 7 3.1208 5.3537 -9.4650
21 14 5.3337 6.7561 -8.5625
22 1 6.5449 6.0046 -8.9791
23 1 5.0260 7.7989 -9.5740
24 1 5.5786 7.3998 -7.2468
25 6 3.2870 3.7186 -4.8738
26 6 3.1455 3.0406 -3.6801
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5140 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.5817 1.6878 2.0284
33 1 2.0956 3.1411 1.1383
34 1 3.8745 0.7622 1.8407
35 1 4.3883 2.2155 0.9507
36 1 3.0935 2.6646 3.6843
37 1 5.4964 3.9070 2.0977
38 1 4.8097 4.5325 3.6908
39 1 5.3467 2.3123 4.7950
40 1 6.0340 1.6863 3.2020
41 1 1.7569 0.4471 -2.3357
42 1 0.5588 1.0215 -4.5096
43 1 0.8059 2.2359 -6.6347
44 1 3.3047 5.7970 -10.3079
45 1 4.0527 4.4730 -4.9789
46 1 3.8007 3.2642 -2.8512
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001325434789.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:48:34
Heat of formation + Delta-G solvation = 0.262662 kcal
Electronic energy + Delta-G solvation = -26043.970457 eV
Core-core repulsion = 22321.636216 eV
Total energy + Delta-G solvation = -3722.334241 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.56368 -38.86058 -37.90602 -36.77396 -35.84671 -34.00206 -32.17470 -31.77850
-30.14652 -29.68451 -27.64225 -25.27262 -24.18472 -23.62051 -22.59538 -22.18692
-21.21192 -20.69241 -19.51097 -18.46038 -17.82352 -17.17252 -16.57556 -16.10598
-15.64585 -15.06024 -14.69925 -14.46005 -14.28916 -14.21532 -13.95877 -13.86149
-13.53970 -13.48697 -13.11737 -12.80514 -12.50005 -12.43943 -12.31787 -11.79410
-11.69260 -11.61645 -11.52772 -11.49589 -11.41267 -11.27716 -10.97370 -10.70932
-10.57761 -10.39498 -10.12799 -9.83749 -9.61848 -9.13140 -8.81802 -8.61296
-8.13722 -6.85452 -6.39539 -3.96971 2.20160 2.30428 2.63710 3.16496
3.18430 3.23333 3.34885 3.55431 3.90659 4.02493 4.43930 4.58160
4.63634 4.66235 4.67934 4.84313 4.92393 5.03914 5.05014 5.14898
5.31433 5.32677 5.39043 5.39819 5.45418 5.48464 5.64648 5.71970
5.73581 5.78978 5.85381 5.89428 5.89993 6.10846 6.18150 6.25168
6.30899 6.50293 6.73278 6.80149 7.02039 7.16451 7.21504 7.39816
7.50625 7.85531 8.02927 8.06457 8.72557 9.06573 9.76789 10.78625
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014684 B = 0.002744 C = 0.002347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1906.405200 B =10202.201790 C =11925.534873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.106 3.894
3 N -0.632 5.632
4 C 0.138 3.862
5 C -0.105 4.105
6 C -0.150 4.150
7 C -0.178 4.178
8 C -0.183 4.183
9 C 0.701 3.299
10 O -0.572 6.572
11 N -0.675 5.675
12 C 0.053 3.947
13 C -0.096 4.096
14 C -0.178 4.178
15 C 0.145 3.855
16 O -0.179 6.179
17 C -0.389 4.389
18 H 0.092 0.908
19 C 0.038 3.962
20 N -0.865 5.865
21 Si 0.940 3.060
22 H -0.274 1.274
23 H -0.278 1.278
24 H -0.267 1.267
25 C -0.219 4.219
26 C -0.064 4.064
27 H 0.060 0.940
28 H 0.066 0.934
29 H 0.059 0.941
30 H 0.072 0.928
31 H 0.080 0.920
32 H 0.073 0.927
33 H 0.086 0.914
34 H 0.064 0.936
35 H 0.070 0.930
36 H 0.104 0.896
37 H 0.096 0.904
38 H 0.092 0.908
39 H 0.092 0.908
40 H 0.092 0.908
41 H 0.396 0.604
42 H 0.113 0.887
43 H 0.121 0.879
44 H 0.269 0.731
45 H 0.130 0.870
46 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.552 -11.826 23.422 26.284
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.018 4.018
3 N -0.369 5.369
4 C 0.015 3.985
5 C -0.144 4.144
6 C -0.169 4.169
7 C -0.215 4.215
8 C -0.220 4.220
9 C 0.403 3.597
10 O -0.448 6.448
11 N -0.323 5.323
12 C -0.040 4.040
13 C -0.116 4.116
14 C -0.198 4.198
15 C 0.091 3.909
16 O -0.082 6.082
17 C -0.466 4.466
18 H 0.109 0.891
19 C -0.165 4.165
20 N -0.500 5.500
21 Si 0.765 3.235
22 H -0.199 1.199
23 H -0.203 1.203
24 H -0.192 1.192
25 C -0.239 4.239
26 C -0.084 4.084
27 H 0.079 0.921
28 H 0.085 0.915
29 H 0.078 0.922
30 H 0.091 0.909
31 H 0.099 0.901
32 H 0.092 0.908
33 H 0.104 0.896
34 H 0.082 0.918
35 H 0.089 0.911
36 H 0.122 0.878
37 H 0.114 0.886
38 H 0.111 0.889
39 H 0.110 0.890
40 H 0.111 0.889
41 H 0.232 0.768
42 H 0.131 0.869
43 H 0.139 0.861
44 H 0.079 0.921
45 H 0.147 0.853
46 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -1.419 -10.896 22.985 25.477
hybrid contribution 0.556 0.036 0.043 0.559
sum -0.863 -10.860 23.029 25.476
Atomic orbital electron populations
1.22247 0.95790 1.02269 1.02976 1.21482 0.94546 0.82858 1.02907
1.47204 1.70493 1.14237 1.05005 1.21269 0.95258 0.98755 0.83246
1.21567 0.97900 0.99840 0.95060 1.22198 0.93395 1.02628 0.98630
1.23060 1.03271 0.92232 1.02938 1.22968 0.98874 1.00453 0.99666
1.15914 0.79039 0.84451 0.80267 1.90926 1.51579 1.16610 1.85681
1.42471 1.72748 1.13600 1.03530 1.17063 1.00373 1.01490 0.85059
1.20312 0.97860 1.00796 0.92667 1.19961 1.02055 0.99553 0.98191
1.19404 0.93562 0.90968 0.86976 1.83973 1.45399 1.49885 1.28951
1.21328 1.06023 1.21005 0.98196 0.89067 1.25269 0.98769 0.98253
0.94255 1.70049 1.37151 1.41408 1.01386 0.85725 0.79908 0.79241
0.78662 1.19919 1.20308 1.19153 1.21109 1.04318 1.05164 0.93312
1.20881 0.95764 0.95038 0.96738 0.92065 0.91461 0.92183 0.90929
0.90131 0.90833 0.89558 0.91783 0.91100 0.87807 0.88550 0.88916
0.88975 0.88932 0.76797 0.86915 0.86118 0.92112 0.85285 0.85614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16
2 C 0.11 0.75 5.93 -4.04 -0.02 0.72 16
3 N -0.63 -6.79 2.47 -179.42 -0.44 -7.23 16
4 C 0.14 1.32 5.36 -4.04 -0.02 1.30 16
5 C -0.10 -0.96 5.82 -26.73 -0.16 -1.11 16
6 C -0.15 -1.21 5.73 -90.62 -0.52 -1.73 16
7 C -0.18 -1.55 10.18 -26.69 -0.27 -1.82 16
8 C -0.18 -1.38 10.25 -26.69 -0.27 -1.66 16
9 C 0.70 10.66 8.12 -86.92 -0.71 9.95 16
10 O -0.57 -11.09 13.36 5.29 0.07 -11.01 16
11 N -0.67 -9.76 5.22 -14.18 -0.07 -9.84 16
12 C 0.05 0.97 6.30 -83.61 -0.53 0.45 16
13 C -0.10 -1.71 9.96 -39.42 -0.39 -2.11 16
14 C -0.18 -3.77 9.98 -39.42 -0.39 -4.16 16
15 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16
16 O -0.18 -5.18 9.76 0.00 0.00 -5.18 16
17 C -0.39 -11.13 9.48 30.88 0.29 -10.84 16
18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16
19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
20 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16
21 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16
22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
25 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16
26 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16
27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16
30 H 0.07 0.47 6.30 -51.93 -0.33 0.14 16
31 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16
32 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16
33 H 0.09 1.03 7.42 -51.92 -0.39 0.64 16
34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16
36 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16
37 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16
38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
41 H 0.40 4.33 6.52 -40.82 -0.27 4.06 16
42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16
43 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16
44 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16
45 H 0.13 3.02 5.63 -52.49 -0.30 2.72 16
46 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16
LS Contribution 381.54 15.07 5.75 5.75
Total: -1.00 -33.72 381.54 -9.53 -43.25
By element:
Atomic # 1 Polarization: 14.69 SS G_CDS: -6.90 Total: 7.79 kcal
Atomic # 6 Polarization: -10.91 SS G_CDS: -3.67 Total: -14.59 kcal
Atomic # 7 Polarization: -42.25 SS G_CDS: 0.24 Total: -42.01 kcal
Atomic # 8 Polarization: -16.27 SS G_CDS: 0.07 Total: -16.20 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -33.72 -9.53 -43.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325434789.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.515 kcal
(2) G-P(sol) polarization free energy of solvation -33.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.793 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds