Wall clock time and date at job start Tue Mar 31 2020 12:48:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46497 * 109.47076 * 2 1
4 4 C 1.46495 * 120.00089 * 90.00188 * 3 2 1
5 5 C 1.53007 * 109.47572 * 89.99760 * 4 3 2
6 6 C 1.52989 * 109.47232 * 180.02562 * 5 4 3
7 7 C 1.53004 * 117.50035 * 243.74470 * 6 5 4
8 8 C 1.53004 * 117.49812 * 175.08545 * 6 5 4
9 9 C 1.34781 * 119.99778 * 269.99636 * 3 2 1
10 10 O 1.21585 * 119.99890 * 180.02562 * 9 3 2
11 11 N 1.34774 * 120.00013 * 0.02562 * 9 3 2
12 12 C 1.40027 * 119.99923 * 175.51868 * 11 9 3
13 13 C 1.38913 * 119.99991 * 214.84922 * 12 11 9
14 14 C 1.38006 * 119.99834 * 179.81024 * 13 12 11
15 15 C 1.38905 * 120.00221 * 0.44223 * 14 13 12
16 16 O 1.35781 * 120.00171 * 179.76873 * 15 14 13
17 17 C 1.34813 * 116.99862 * 185.36142 * 16 15 14
18 18 H 1.07995 * 120.00274 * 354.96198 * 17 16 15
19 19 C 1.38629 * 119.99678 * 174.96441 * 17 16 15
20 20 N 1.31578 * 120.00195 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99972 * 179.97438 * 19 17 16
22 22 H 1.48504 * 109.47139 * 89.99938 * 21 19 17
23 23 H 1.48499 * 109.47126 * 209.99681 * 21 19 17
24 24 H 1.48502 * 109.47037 * 329.99692 * 21 19 17
25 25 C 1.38908 * 120.00148 * 359.78953 * 15 14 13
26 26 C 1.38008 * 119.99934 * 359.97438 * 25 15 14
27 27 H 1.08999 * 109.47095 * 59.99772 * 1 2 3
28 28 H 1.08998 * 109.47284 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.47238 * 300.00756 * 1 2 3
30 30 H 1.08997 * 109.46973 * 239.99976 * 2 1 3
31 31 H 1.09002 * 109.46938 * 119.99733 * 2 1 3
32 32 H 1.09000 * 109.47503 * 329.99207 * 4 3 2
33 33 H 1.09008 * 109.47262 * 209.99638 * 4 3 2
34 34 H 1.09000 * 109.46883 * 300.00482 * 5 4 3
35 35 H 1.09005 * 109.46513 * 59.99515 * 5 4 3
36 36 H 1.09004 * 115.55522 * 29.41239 * 6 5 4
37 37 H 1.08999 * 117.49498 * 0.02562 * 7 6 5
38 38 H 1.08996 * 117.50142 * 145.02113 * 7 6 5
39 39 H 1.08999 * 117.50008 * 214.97558 * 8 6 5
40 40 H 1.09000 * 117.49522 * 0.02562 * 8 6 5
41 41 H 0.96995 * 120.00036 * 355.51845 * 11 9 3
42 42 H 1.07998 * 120.00137 * 0.02562 * 13 12 11
43 43 H 1.07998 * 120.00351 * 180.18401 * 14 13 12
44 44 H 0.96998 * 119.99784 * 180.02562 * 20 19 17
45 45 H 1.07992 * 120.00093 * 179.97438 * 25 15 14
46 46 H 1.07999 * 119.99898 * 179.97438 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0718 1.2687
5 6 3.7076 1.8314 1.7104
6 6 3.9623 2.5521 3.0357
7 6 4.9973 3.6789 3.0395
8 6 5.3213 2.3394 3.7057
9 6 2.2430 2.0165 -1.1673
10 8 2.6487 3.1626 -1.1673
11 7 2.0180 1.3813 -2.3344
12 6 2.1610 2.0699 -3.5452
13 6 1.3218 1.7787 -4.6132
14 6 1.4602 2.4602 -5.8053
15 6 2.4447 3.4308 -5.9402
16 8 2.5840 4.0979 -7.1146
17 6 3.6268 4.9462 -7.2166
18 1 4.2577 5.1319 -6.3600
19 6 3.8892 5.5802 -8.4212
20 7 3.1208 5.3537 -9.4650
21 14 5.3337 6.7561 -8.5625
22 1 6.5449 6.0046 -8.9791
23 1 5.0260 7.7989 -9.5740
24 1 5.5786 7.3998 -7.2468
25 6 3.2870 3.7186 -4.8738
26 6 3.1455 3.0406 -3.6801
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5140 0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.5817 1.6878 2.0284
33 1 2.0956 3.1411 1.1383
34 1 3.8745 0.7622 1.8407
35 1 4.3883 2.2155 0.9507
36 1 3.0935 2.6646 3.6843
37 1 5.4964 3.9070 2.0977
38 1 4.8097 4.5325 3.6908
39 1 5.3467 2.3123 4.7950
40 1 6.0340 1.6863 3.2020
41 1 1.7569 0.4471 -2.3357
42 1 0.5588 1.0215 -4.5096
43 1 0.8059 2.2359 -6.6347
44 1 3.3047 5.7970 -10.3079
45 1 4.0527 4.4730 -4.9789
46 1 3.8007 3.2642 -2.8512
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001325434789.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:48:33
Heat of formation + Delta-G solvation = -19.478091 kcal
Electronic energy + Delta-G solvation = -26044.826481 eV
Core-core repulsion = 22321.636216 eV
Total energy + Delta-G solvation = -3723.190264 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.80123 -40.55473 -38.83920 -38.16990 -36.95949 -35.44197 -34.16180 -32.54981
-31.84904 -30.63258 -29.14261 -27.26917 -25.08693 -24.45184 -23.83767 -23.23585
-22.74845 -21.38742 -20.75779 -19.97141 -19.38961 -18.67200 -18.10230 -17.01087
-16.57315 -16.48313 -16.21451 -15.77053 -15.66522 -15.43472 -15.26648 -15.01086
-14.73265 -14.58014 -14.53524 -14.25148 -13.86154 -13.55013 -13.25105 -13.18698
-13.10995 -12.86184 -12.69189 -12.45335 -12.43683 -12.21073 -12.14878 -12.13452
-11.99899 -11.43535 -11.26471 -11.17942 -10.90492 -10.80097 -10.52914 -9.82692
-9.69906 -8.56131 -8.46454 -6.13026 0.53420 0.60368 1.34560 1.42835
1.51585 1.58075 2.09274 2.18247 2.83437 2.86017 2.92690 3.16399
3.52740 3.76057 3.98753 4.00217 4.04968 4.08906 4.13790 4.18823
4.31017 4.39169 4.48914 4.53216 4.60542 4.66843 4.71372 4.73441
4.78675 4.88389 4.92651 5.02314 5.05054 5.06528 5.11736 5.15123
5.25132 5.36026 5.37794 5.40815 5.43188 5.61767 5.65060 5.71681
5.94189 6.03172 6.20275 6.91574 6.98267 7.53226 7.78016 8.76288
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014684 B = 0.002744 C = 0.002347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1906.405200 B =10202.201790 C =11925.534873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.098 3.902
3 N -0.620 5.620
4 C 0.137 3.863
5 C -0.097 4.097
6 C -0.148 4.148
7 C -0.198 4.198
8 C -0.171 4.171
9 C 0.695 3.305
10 O -0.620 6.620
11 N -0.663 5.663
12 C 0.081 3.919
13 C -0.079 4.079
14 C -0.177 4.177
15 C 0.105 3.895
16 O -0.227 6.227
17 C -0.413 4.413
18 H 0.096 0.904
19 C -0.020 4.020
20 N -0.918 5.918
21 Si 1.015 2.985
22 H -0.262 1.262
23 H -0.268 1.268
24 H -0.259 1.259
25 C -0.228 4.228
26 C -0.076 4.076
27 H 0.042 0.958
28 H 0.090 0.910
29 H 0.059 0.941
30 H 0.083 0.917
31 H 0.109 0.891
32 H 0.110 0.890
33 H 0.057 0.943
34 H 0.082 0.918
35 H 0.035 0.965
36 H 0.122 0.878
37 H 0.075 0.925
38 H 0.100 0.900
39 H 0.109 0.891
40 H 0.091 0.909
41 H 0.418 0.582
42 H 0.166 0.834
43 H 0.130 0.870
44 H 0.273 0.727
45 H 0.114 0.886
46 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.263 -14.476 26.577 30.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.024 4.024
3 N -0.356 5.356
4 C 0.014 3.986
5 C -0.135 4.135
6 C -0.167 4.167
7 C -0.236 4.236
8 C -0.208 4.208
9 C 0.397 3.603
10 O -0.500 6.500
11 N -0.314 5.314
12 C -0.013 4.013
13 C -0.099 4.099
14 C -0.197 4.197
15 C 0.054 3.946
16 O -0.134 6.134
17 C -0.490 4.490
18 H 0.113 0.887
19 C -0.218 4.218
20 N -0.556 5.556
21 Si 0.835 3.165
22 H -0.186 1.186
23 H -0.193 1.193
24 H -0.182 1.182
25 C -0.247 4.247
26 C -0.097 4.097
27 H 0.061 0.939
28 H 0.109 0.891
29 H 0.078 0.922
30 H 0.101 0.899
31 H 0.128 0.872
32 H 0.128 0.872
33 H 0.076 0.924
34 H 0.100 0.900
35 H 0.054 0.946
36 H 0.140 0.860
37 H 0.094 0.906
38 H 0.118 0.882
39 H 0.128 0.872
40 H 0.109 0.891
41 H 0.258 0.742
42 H 0.183 0.817
43 H 0.148 0.852
44 H 0.082 0.918
45 H 0.132 0.868
46 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -2.161 -13.643 26.234 29.648
hybrid contribution 0.656 0.618 -0.589 1.077
sum -1.505 -13.025 25.644 28.802
Atomic orbital electron populations
1.22215 0.95001 1.03543 1.02092 1.21844 0.95096 0.80523 1.04917
1.47290 1.69033 1.15568 1.03721 1.21400 0.96412 0.97397 0.83415
1.21461 0.96682 1.00785 0.94611 1.22264 0.94235 1.01809 0.98387
1.23078 1.04482 0.93386 1.02607 1.23036 0.98264 0.98959 1.00555
1.16175 0.78702 0.84079 0.81383 1.90910 1.53583 1.19000 1.86490
1.42280 1.72565 1.14465 1.02099 1.17180 0.98177 0.99460 0.86510
1.20724 0.97972 1.00565 0.90639 1.20304 1.00927 0.98614 0.99868
1.19918 0.95562 0.92583 0.86492 1.83934 1.46553 1.51791 1.31107
1.21750 1.06578 1.21705 0.98930 0.88717 1.26509 1.01837 0.99954
0.93474 1.70177 1.39680 1.43577 1.02183 0.84635 0.76015 0.76809
0.79056 1.18645 1.19253 1.18242 1.21078 1.04131 1.05456 0.94080
1.20914 0.96987 0.96126 0.95646 0.93872 0.89102 0.92192 0.89895
0.87246 0.87165 0.92433 0.89992 0.94584 0.85975 0.90650 0.88168
0.87240 0.89078 0.74173 0.81671 0.85190 0.91787 0.86771 0.85996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.49 10.24 71.98 0.74 -0.75 16
2 C 0.10 0.94 5.93 86.38 0.51 1.46 16
3 N -0.62 -11.63 2.47 -839.82 -2.08 -13.71 16
4 C 0.14 2.31 5.36 86.38 0.46 2.78 16
5 C -0.10 -1.60 5.82 30.59 0.18 -1.42 16
6 C -0.15 -2.12 5.73 -10.79 -0.06 -2.18 16
7 C -0.20 -3.39 10.18 30.62 0.31 -3.08 16
8 C -0.17 -2.27 10.25 30.62 0.31 -1.96 16
9 C 0.69 20.01 8.12 179.05 1.45 21.47 16
10 O -0.62 -24.22 13.36 -3.98 -0.05 -24.27 16
11 N -0.66 -17.35 5.22 -317.04 -1.65 -19.00 16
12 C 0.08 2.84 6.30 38.16 0.24 3.08 16
13 C -0.08 -2.60 9.96 22.38 0.22 -2.38 16
14 C -0.18 -7.47 9.98 22.37 0.22 -7.25 16
15 C 0.11 5.43 6.65 22.59 0.15 5.58 16
16 O -0.23 -14.01 9.76 -22.92 -0.22 -14.23 16
17 C -0.41 -25.02 9.48 67.91 0.64 -24.38 16
18 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16
19 C -0.02 -1.18 5.49 84.82 0.47 -0.71 16
20 N -0.92 -57.16 13.67 21.61 0.30 -56.87 16
21 Si 1.02 44.54 29.55 68.60 2.03 46.57 16
22 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16
23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16
25 C -0.23 -11.07 9.16 22.38 0.20 -10.86 16
26 C -0.08 -3.24 8.69 22.38 0.19 -3.04 16
27 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16
28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16
29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16
30 H 0.08 0.66 6.30 -2.39 -0.02 0.64 16
31 H 0.11 0.53 8.07 -2.39 -0.02 0.52 16
32 H 0.11 1.10 8.07 -2.39 -0.02 1.08 16
33 H 0.06 1.34 7.42 -2.38 -0.02 1.32 16
34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.04 0.85 7.88 -2.38 -0.02 0.83 16
36 H 0.12 1.32 8.08 -2.38 -0.02 1.30 16
37 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16
38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
41 H 0.42 7.35 6.52 -92.71 -0.60 6.74 16
42 H 0.17 3.78 8.06 -2.91 -0.02 3.75 16
43 H 0.13 5.18 8.06 -2.91 -0.02 5.15 16
44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
45 H 0.11 5.75 5.63 -2.91 -0.02 5.74 16
46 H 0.12 5.28 6.22 -2.91 -0.02 5.27 16
Total: -1.00 -80.48 381.54 4.96 -75.52
By element:
Atomic # 1 Polarization: 29.25 SS G_CDS: 0.38 Total: 29.64 kcal
Atomic # 6 Polarization: -29.91 SS G_CDS: 6.26 Total: -23.66 kcal
Atomic # 7 Polarization: -86.14 SS G_CDS: -3.44 Total: -89.58 kcal
Atomic # 8 Polarization: -38.22 SS G_CDS: -0.28 Total: -38.50 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal
Total: -80.48 4.96 -75.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325434789.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal
(2) G-P(sol) polarization free energy of solvation -80.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds