Wall clock time and date at job start Tue Mar 31 2020 13:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46937 * 2 1 4 4 C 1.46500 * 120.00201 * 269.99998 * 3 2 1 5 5 C 1.34780 * 119.99814 * 89.99906 * 3 2 1 6 6 O 1.21283 * 120.00037 * 359.97438 * 5 3 2 7 7 C 1.50706 * 119.99882 * 179.97438 * 5 3 2 8 8 H 1.08997 * 109.46727 * 60.00075 * 7 5 3 9 9 C 1.52992 * 109.47146 * 300.00219 * 7 5 3 10 10 N 1.46496 * 109.46961 * 179.97438 * 7 5 3 11 11 C 1.34783 * 120.00041 * 205.00090 * 10 7 5 12 12 O 1.21280 * 119.99494 * 359.97438 * 11 10 7 13 13 C 1.50693 * 119.99880 * 180.02562 * 11 10 7 14 14 H 1.09005 * 109.47417 * 60.00076 * 13 11 10 15 15 C 1.50698 * 109.47458 * 299.99926 * 13 11 10 16 16 H 1.07998 * 119.99902 * 324.87941 * 15 13 11 17 17 C 1.37870 * 120.00251 * 144.88266 * 15 13 11 18 18 N 1.31517 * 120.00023 * 5.19493 * 17 15 13 19 19 Si 1.86803 * 120.00251 * 185.19337 * 17 15 13 20 20 H 1.48508 * 109.46958 * 60.00096 * 19 17 15 21 21 H 1.48497 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47339 * 300.00131 * 19 17 15 23 23 C 1.50699 * 109.47008 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99754 * 66.01551 * 23 13 11 25 25 C 1.38241 * 120.00170 * 179.78975 * 24 23 13 26 26 C 1.38240 * 119.99696 * 0.43832 * 25 24 23 27 27 C 1.38242 * 119.99893 * 359.81333 * 26 25 24 28 28 C 1.38234 * 120.00274 * 246.28439 * 23 13 11 29 29 H 1.09003 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47144 * 299.99953 * 1 2 3 31 31 H 1.08999 * 109.47040 * 59.99710 * 1 2 3 32 32 H 1.08996 * 109.47144 * 240.00047 * 2 1 3 33 33 H 1.08999 * 109.47383 * 119.99869 * 2 1 3 34 34 H 1.08999 * 109.46928 * 269.99833 * 4 3 2 35 35 H 1.09001 * 109.46895 * 30.00519 * 4 3 2 36 36 H 1.09004 * 109.47279 * 149.99875 * 4 3 2 37 37 H 1.09008 * 109.46912 * 300.00042 * 9 7 5 38 38 H 1.09000 * 109.47162 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.47407 * 59.99505 * 9 7 5 40 40 H 0.97003 * 120.00300 * 25.00144 * 10 7 5 41 41 H 0.97002 * 120.00234 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.00061 * 359.97438 * 24 23 13 43 43 H 1.07993 * 120.00334 * 180.27121 * 25 24 23 44 44 H 1.08001 * 119.99919 * 179.83516 * 26 25 24 45 45 H 1.07995 * 119.99475 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.99992 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2430 2.0166 1.1673 6 8 2.0404 1.4450 2.2176 7 6 2.7458 3.4373 1.1673 8 1 2.0281 4.0766 0.6532 9 6 4.0937 3.5012 0.4463 10 7 2.9078 3.8979 2.5485 11 6 2.8503 5.2145 2.8309 12 8 2.6649 6.0179 1.9415 13 6 3.0176 5.6883 4.2516 14 1 3.9949 5.3815 4.6244 15 6 1.9390 5.0838 5.1131 16 1 0.9504 4.9248 4.7084 17 6 2.2142 4.7336 6.4179 18 7 3.3857 5.0200 6.9425 19 14 0.9231 3.8525 7.4408 20 1 0.5706 2.5648 6.7905 21 1 1.4626 3.5893 8.7990 22 1 -0.2901 4.7025 7.5457 23 6 2.9130 7.1910 4.2956 24 6 1.7157 7.8098 3.9879 25 6 1.6184 9.1880 4.0324 26 6 2.7210 9.9480 4.3758 27 6 3.9197 9.3294 4.6785 28 6 4.0157 7.9510 4.6382 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.2920 1.9007 -1.5833 35 1 1.5817 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 4.8114 2.8617 0.9604 38 1 4.4576 4.5286 0.4467 39 1 3.9727 3.1585 -0.5814 40 1 3.0565 3.2553 3.2598 41 1 3.5795 4.7734 7.8604 42 1 0.8555 7.2162 3.7155 43 1 0.6819 9.6712 3.7962 44 1 2.6457 11.0249 4.4080 45 1 4.7808 9.9231 4.9472 46 1 4.9520 7.4678 4.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363105747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:33 Heat of formation + Delta-G solvation = -46.892593 kcal Electronic energy + Delta-G solvation = -27258.277838 eV Core-core repulsion = 23533.898791 eV Total energy + Delta-G solvation = -3724.379046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31199 -38.95355 -37.66286 -35.94106 -34.56252 -33.59409 -31.73155 -31.02943 -29.89516 -29.63308 -27.24340 -26.95567 -24.77534 -23.87895 -22.56488 -21.55459 -20.72073 -19.38134 -19.21461 -17.23797 -16.69133 -16.56208 -15.89263 -15.66889 -15.54682 -14.84754 -14.47516 -14.38147 -13.97198 -13.96540 -13.73908 -13.52032 -13.17246 -13.02269 -12.73266 -12.48281 -12.39733 -12.27012 -12.20154 -12.10693 -11.71985 -11.62917 -11.45223 -11.34067 -11.17739 -10.97316 -10.92830 -10.34361 -10.22614 -9.96897 -9.65157 -9.38263 -8.82159 -8.74348 -8.58617 -8.40458 -7.90456 -7.56447 -6.20339 -4.26177 2.41793 2.44181 2.64711 2.82506 3.29626 3.33060 3.37366 3.70456 4.01897 4.36113 4.44845 4.85346 4.88755 4.92901 5.00961 5.16266 5.22418 5.23487 5.25581 5.33425 5.46855 5.53451 5.67992 5.75603 5.77663 5.83097 5.90240 5.94114 6.05139 6.22990 6.25850 6.35506 6.42832 6.53619 6.64542 6.89770 7.01455 7.06166 7.21413 7.31550 7.40892 7.48978 7.69480 7.81705 7.99859 8.12103 8.15562 8.41162 8.76835 9.22729 9.39950 10.87999 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.004396 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.387485 B = 6368.541429 C = 7897.325251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.619 5.619 4 C 0.074 3.926 5 C 0.510 3.490 6 O -0.522 6.522 7 C 0.128 3.872 8 H 0.106 0.894 9 C -0.169 4.169 10 N -0.713 5.713 11 C 0.532 3.468 12 O -0.569 6.569 13 C 0.053 3.947 14 H 0.089 0.911 15 C -0.513 4.513 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.878 5.878 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.007 4.007 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.415 0.585 41 H 0.267 0.733 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 -5.377 -14.372 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.355 5.355 4 C -0.069 4.069 5 C 0.298 3.702 6 O -0.396 6.396 7 C 0.019 3.981 8 H 0.124 0.876 9 C -0.227 4.227 10 N -0.367 5.367 11 C 0.322 3.678 12 O -0.448 6.448 13 C 0.032 3.968 14 H 0.107 0.893 15 C -0.551 4.551 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.514 5.514 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.008 4.008 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.176 -5.145 -14.237 15.139 hybrid contribution -0.704 -0.752 0.930 1.388 sum -0.880 -5.896 -13.307 14.582 Atomic orbital electron populations 1.22138 0.95941 1.02119 1.02501 1.21406 0.94432 0.82184 1.03040 1.47835 1.67054 1.14380 1.06221 1.22016 1.01200 0.98304 0.85395 1.20935 0.77151 0.88746 0.83387 1.90735 1.50807 1.67310 1.30763 1.20564 0.98634 0.91688 0.87245 0.87591 1.22386 0.96130 1.03944 1.00280 1.45790 1.74846 1.08980 1.07090 1.21719 0.72959 0.80670 0.92422 1.90564 1.50528 1.54158 1.49572 1.18088 1.01981 0.88971 0.87776 0.89276 1.20618 0.96419 1.41753 0.96283 0.92021 1.24941 0.95629 0.94759 0.97637 1.69904 1.21638 1.44936 1.14935 0.86554 0.81573 0.80435 0.79039 1.19692 1.21123 1.20047 1.20010 0.92107 0.96119 0.92582 1.20817 0.97744 0.93442 0.98312 1.20943 0.97778 0.94371 1.02197 1.20788 0.93833 0.98420 1.03732 1.20894 0.97172 0.94820 1.02135 1.20980 0.98476 0.93242 1.00895 0.91685 0.91983 0.92683 0.90690 0.89782 0.91997 0.91151 0.90359 0.92098 0.90682 0.90898 0.74792 0.92345 0.87200 0.87662 0.87772 0.87601 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.11 1.11 6.13 -4.04 -0.02 1.08 16 3 N -0.62 -7.03 2.87 -181.56 -0.52 -7.56 16 4 C 0.07 0.57 8.80 59.85 0.53 1.10 16 5 C 0.51 7.89 7.14 -10.98 -0.08 7.81 16 6 O -0.52 -10.07 15.42 5.55 0.09 -9.99 16 7 C 0.13 2.03 2.18 -69.09 -0.15 1.87 16 8 H 0.11 1.71 6.84 -51.93 -0.35 1.35 16 9 C -0.17 -2.17 9.12 37.15 0.34 -1.83 16 10 N -0.71 -14.09 4.85 -54.94 -0.27 -14.36 16 11 C 0.53 11.97 7.01 -10.99 -0.08 11.90 16 12 O -0.57 -13.45 15.08 5.56 0.08 -13.37 16 13 C 0.05 1.29 2.37 -94.08 -0.22 1.07 16 14 H 0.09 2.30 7.13 -51.93 -0.37 1.93 16 15 C -0.51 -13.40 7.47 -34.44 -0.26 -13.65 16 16 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 17 C 0.08 1.99 5.45 -17.82 -0.10 1.89 16 18 N -0.88 -23.94 12.84 55.43 0.71 -23.23 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 24 C -0.08 -1.95 8.31 -39.58 -0.33 -2.28 16 25 C -0.13 -2.71 10.05 -39.58 -0.40 -3.10 16 26 C -0.15 -2.83 10.05 -39.58 -0.40 -3.22 16 27 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 28 C -0.12 -2.61 9.67 -39.58 -0.38 -3.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.06 0.39 6.95 -51.93 -0.36 0.03 16 35 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.08 0.63 6.01 -51.93 -0.31 0.32 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.69 4.53 -51.93 -0.24 0.45 16 40 H 0.41 8.63 7.68 -40.82 -0.31 8.32 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.11 2.56 7.90 -52.49 -0.41 2.14 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -31.60 379.81 -8.15 -39.75 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.93 Total: 12.21 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.02 Total: -5.21 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.08 Total: -45.14 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.60 -8.15 -39.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363105747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.140 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds