Wall clock time and date at job start Tue Mar 31 2020 13:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46937 * 2 1 4 4 C 1.46500 * 120.00201 * 269.99998 * 3 2 1 5 5 C 1.34780 * 119.99814 * 89.99906 * 3 2 1 6 6 O 1.21283 * 120.00037 * 359.97438 * 5 3 2 7 7 C 1.50706 * 119.99882 * 179.97438 * 5 3 2 8 8 H 1.08997 * 109.46727 * 60.00075 * 7 5 3 9 9 C 1.52992 * 109.47146 * 300.00219 * 7 5 3 10 10 N 1.46496 * 109.46961 * 179.97438 * 7 5 3 11 11 C 1.34783 * 120.00041 * 205.00090 * 10 7 5 12 12 O 1.21280 * 119.99494 * 359.97438 * 11 10 7 13 13 C 1.50693 * 119.99880 * 180.02562 * 11 10 7 14 14 H 1.09005 * 109.47417 * 60.00076 * 13 11 10 15 15 C 1.50698 * 109.47458 * 299.99926 * 13 11 10 16 16 H 1.07998 * 119.99902 * 324.87941 * 15 13 11 17 17 C 1.37870 * 120.00251 * 144.88266 * 15 13 11 18 18 N 1.31517 * 120.00023 * 5.19493 * 17 15 13 19 19 Si 1.86803 * 120.00251 * 185.19337 * 17 15 13 20 20 H 1.48508 * 109.46958 * 60.00096 * 19 17 15 21 21 H 1.48497 * 109.47179 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47339 * 300.00131 * 19 17 15 23 23 C 1.50699 * 109.47008 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99754 * 66.01551 * 23 13 11 25 25 C 1.38241 * 120.00170 * 179.78975 * 24 23 13 26 26 C 1.38240 * 119.99696 * 0.43832 * 25 24 23 27 27 C 1.38242 * 119.99893 * 359.81333 * 26 25 24 28 28 C 1.38234 * 120.00274 * 246.28439 * 23 13 11 29 29 H 1.09003 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47144 * 299.99953 * 1 2 3 31 31 H 1.08999 * 109.47040 * 59.99710 * 1 2 3 32 32 H 1.08996 * 109.47144 * 240.00047 * 2 1 3 33 33 H 1.08999 * 109.47383 * 119.99869 * 2 1 3 34 34 H 1.08999 * 109.46928 * 269.99833 * 4 3 2 35 35 H 1.09001 * 109.46895 * 30.00519 * 4 3 2 36 36 H 1.09004 * 109.47279 * 149.99875 * 4 3 2 37 37 H 1.09008 * 109.46912 * 300.00042 * 9 7 5 38 38 H 1.09000 * 109.47162 * 180.02562 * 9 7 5 39 39 H 1.09002 * 109.47407 * 59.99505 * 9 7 5 40 40 H 0.97003 * 120.00300 * 25.00144 * 10 7 5 41 41 H 0.97002 * 120.00234 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.00061 * 359.97438 * 24 23 13 43 43 H 1.07993 * 120.00334 * 180.27121 * 25 24 23 44 44 H 1.08001 * 119.99919 * 179.83516 * 26 25 24 45 45 H 1.07995 * 119.99475 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.99992 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2430 2.0166 1.1673 6 8 2.0404 1.4450 2.2176 7 6 2.7458 3.4373 1.1673 8 1 2.0281 4.0766 0.6532 9 6 4.0937 3.5012 0.4463 10 7 2.9078 3.8979 2.5485 11 6 2.8503 5.2145 2.8309 12 8 2.6649 6.0179 1.9415 13 6 3.0176 5.6883 4.2516 14 1 3.9949 5.3815 4.6244 15 6 1.9390 5.0838 5.1131 16 1 0.9504 4.9248 4.7084 17 6 2.2142 4.7336 6.4179 18 7 3.3857 5.0200 6.9425 19 14 0.9231 3.8525 7.4408 20 1 0.5706 2.5648 6.7905 21 1 1.4626 3.5893 8.7990 22 1 -0.2901 4.7025 7.5457 23 6 2.9130 7.1910 4.2956 24 6 1.7157 7.8098 3.9879 25 6 1.6184 9.1880 4.0324 26 6 2.7210 9.9480 4.3758 27 6 3.9197 9.3294 4.6785 28 6 4.0157 7.9510 4.6382 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.2920 1.9007 -1.5833 35 1 1.5817 1.6878 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 4.8114 2.8617 0.9604 38 1 4.4576 4.5286 0.4467 39 1 3.9727 3.1585 -0.5814 40 1 3.0565 3.2553 3.2598 41 1 3.5795 4.7734 7.8604 42 1 0.8555 7.2162 3.7155 43 1 0.6819 9.6712 3.7962 44 1 2.6457 11.0249 4.4080 45 1 4.7808 9.9231 4.9472 46 1 4.9520 7.4678 4.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363105747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:32 Heat of formation + Delta-G solvation = -66.413435 kcal Electronic energy + Delta-G solvation = -27259.124325 eV Core-core repulsion = 23533.898791 eV Total energy + Delta-G solvation = -3725.225534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.59632 -40.56802 -39.27721 -37.01569 -36.00998 -35.53416 -33.05592 -32.65062 -31.52587 -30.82679 -28.94051 -27.85593 -26.08307 -25.52114 -23.74473 -23.19411 -22.24432 -21.02299 -20.38565 -18.84906 -18.34177 -17.87738 -17.44446 -17.04899 -16.94677 -16.35339 -16.04100 -15.86024 -15.49385 -15.34855 -14.96382 -14.69786 -14.57843 -14.29316 -14.04050 -13.99741 -13.74293 -13.61144 -13.40380 -13.29125 -13.15214 -12.92720 -12.90519 -12.78933 -12.71240 -12.43012 -12.21028 -11.97283 -11.95853 -11.67513 -11.30697 -10.90426 -10.70515 -10.48523 -10.03260 -9.73467 -9.54685 -9.25460 -8.24112 -6.34620 0.76786 0.81032 1.37930 1.40883 1.44039 1.47386 1.74745 1.95817 2.39709 2.53239 3.05730 3.27024 3.36294 3.97198 4.05946 4.13471 4.23090 4.24542 4.27363 4.31334 4.38569 4.47403 4.51384 4.55737 4.62674 4.68363 4.79427 4.80162 4.87721 4.92104 4.98161 4.99030 5.09474 5.18097 5.26102 5.37137 5.44543 5.51136 5.58042 5.62105 5.79523 5.83531 5.93214 6.22853 6.23908 6.40810 6.64536 6.71941 7.01717 7.31733 7.46257 8.83825 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.004396 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.387485 B = 6368.541429 C = 7897.325251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.608 5.608 4 C 0.061 3.939 5 C 0.508 3.492 6 O -0.572 6.572 7 C 0.124 3.876 8 H 0.104 0.896 9 C -0.158 4.158 10 N -0.711 5.711 11 C 0.533 3.467 12 O -0.583 6.583 13 C 0.054 3.946 14 H 0.065 0.935 15 C -0.517 4.517 16 H 0.047 0.953 17 C 0.035 3.965 18 N -0.903 5.903 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.274 1.274 23 C -0.035 4.035 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.128 4.128 28 C -0.141 4.141 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.407 0.593 41 H 0.268 0.732 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -4.765 -16.397 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.341 5.341 4 C -0.080 4.080 5 C 0.295 3.705 6 O -0.451 6.451 7 C 0.015 3.985 8 H 0.122 0.878 9 C -0.216 4.216 10 N -0.363 5.363 11 C 0.323 3.677 12 O -0.464 6.464 13 C 0.033 3.967 14 H 0.083 0.917 15 C -0.554 4.554 16 H 0.065 0.935 17 C -0.167 4.167 18 N -0.539 5.539 19 Si 0.775 3.225 20 H -0.200 1.200 21 H -0.202 1.202 22 H -0.199 1.199 23 C -0.036 4.036 24 C -0.129 4.129 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.146 4.146 28 C -0.159 4.159 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.244 0.756 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.154 0.846 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.379 -4.554 -16.333 16.961 hybrid contribution -0.650 -0.927 1.427 1.821 sum -1.029 -5.481 -14.907 15.916 Atomic orbital electron populations 1.22101 0.95646 1.03073 1.01385 1.21614 0.94655 0.81247 1.03944 1.47924 1.65111 1.14906 1.06176 1.22358 1.03560 0.98021 0.84048 1.20844 0.77141 0.88428 0.84066 1.90712 1.53384 1.68217 1.32804 1.20828 1.00458 0.92152 0.85030 0.87825 1.22336 0.93962 1.03152 1.02191 1.45766 1.73720 1.07862 1.08938 1.21352 0.73233 0.81510 0.91635 1.90528 1.51588 1.54700 1.49605 1.17972 1.00042 0.90107 0.88628 0.91658 1.20677 0.96179 1.41803 0.96771 0.93487 1.25543 0.97229 0.95436 0.98498 1.69993 1.22843 1.45956 1.15149 0.85737 0.79579 0.79181 0.78000 1.19997 1.20221 1.19901 1.20042 0.93370 0.95727 0.94447 1.20826 0.96913 0.95024 1.00163 1.21316 0.99730 0.93172 1.00993 1.21279 0.92669 1.00550 1.01503 1.21305 0.98920 0.93791 1.00591 1.21124 0.97951 0.94848 1.01999 0.89796 0.95693 0.91046 0.86525 0.92060 0.89593 0.88134 0.90699 0.92210 0.92210 0.86800 0.75648 0.92314 0.88975 0.84636 0.83407 0.84133 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.24 71.98 0.74 -2.18 16 2 C 0.11 1.93 6.13 86.38 0.53 2.46 16 3 N -0.61 -12.87 2.87 -846.73 -2.43 -15.30 16 4 C 0.06 0.74 8.80 127.77 1.12 1.86 16 5 C 0.51 15.92 7.14 87.66 0.63 16.55 16 6 O -0.57 -23.20 15.42 -3.04 -0.05 -23.25 16 7 C 0.12 3.99 2.18 44.25 0.10 4.08 16 8 H 0.10 3.39 6.84 -2.39 -0.02 3.37 16 9 C -0.16 -3.96 9.12 71.98 0.66 -3.30 16 10 N -0.71 -29.68 4.85 -446.11 -2.16 -31.85 16 11 C 0.53 25.30 7.01 87.65 0.61 25.91 16 12 O -0.58 -28.62 15.08 -3.03 -0.05 -28.67 16 13 C 0.05 2.77 2.37 -13.04 -0.03 2.74 16 14 H 0.07 3.61 7.13 -2.38 -0.02 3.59 16 15 C -0.52 -28.36 7.47 25.60 0.19 -28.17 16 16 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 17 C 0.04 1.92 5.45 84.65 0.46 2.38 16 18 N -0.90 -50.91 12.84 21.45 0.28 -50.63 16 19 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.03 -1.72 4.30 -19.87 -0.09 -1.81 16 24 C -0.11 -5.19 8.31 22.27 0.18 -5.01 16 25 C -0.13 -5.18 10.05 22.27 0.22 -4.95 16 26 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 27 C -0.13 -4.78 10.05 22.27 0.22 -4.56 16 28 C -0.14 -6.36 9.67 22.27 0.22 -6.14 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.18 8.07 -2.39 -0.02 1.16 16 33 H 0.06 1.42 7.42 -2.39 -0.02 1.40 16 34 H 0.09 0.70 6.95 -2.39 -0.02 0.68 16 35 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 36 H 0.07 1.01 6.01 -2.38 -0.01 0.99 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.85 4.53 -2.39 -0.01 1.84 16 40 H 0.41 18.20 7.68 -92.71 -0.71 17.48 16 41 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.09 4.50 7.90 -2.91 -0.02 4.48 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.11 4.75 7.96 -2.91 -0.02 4.73 16 Total: -1.00 -73.01 379.81 3.87 -69.14 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.27 Total: 38.97 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.99 Total: -4.84 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -4.32 Total: -97.79 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.09 Total: -51.92 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.01 3.87 -69.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363105747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.725 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds