Wall clock time and date at job start Tue Mar 31 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47547 * 2 1 4 4 N 1.46496 * 109.47397 * 120.00291 * 2 1 3 5 5 C 1.34775 * 120.00508 * 154.99709 * 4 2 1 6 6 O 1.21280 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00441 * 180.02562 * 5 4 2 8 8 H 1.09005 * 109.46981 * 59.99791 * 7 5 4 9 9 C 1.53005 * 109.46877 * 299.99874 * 7 5 4 10 10 N 1.46501 * 109.47313 * 180.02562 * 7 5 4 11 11 C 1.34774 * 119.99791 * 204.99765 * 10 7 5 12 12 O 1.21274 * 120.00648 * 0.02562 * 11 10 7 13 13 C 1.50704 * 119.99630 * 179.97438 * 11 10 7 14 14 H 1.08991 * 109.47396 * 300.00183 * 13 11 10 15 15 C 1.50705 * 109.47007 * 60.00379 * 13 11 10 16 16 H 1.07999 * 119.99926 * 32.98420 * 15 13 11 17 17 C 1.37872 * 119.99738 * 212.98412 * 15 13 11 18 18 N 1.31521 * 119.99776 * 188.11819 * 17 15 13 19 19 Si 1.86801 * 120.00305 * 8.39738 * 17 15 13 20 20 H 1.48500 * 109.46902 * 275.03817 * 19 17 15 21 21 H 1.48497 * 109.47001 * 35.04149 * 19 17 15 22 22 H 1.48496 * 109.47043 * 155.03992 * 19 17 15 23 23 C 1.50703 * 109.46827 * 180.02562 * 13 11 10 24 24 C 1.38234 * 119.99953 * 293.76853 * 23 13 11 25 25 C 1.38240 * 119.99463 * 179.78663 * 24 23 13 26 26 C 1.38231 * 120.00233 * 0.44802 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.80745 * 26 25 24 28 28 C 1.38234 * 119.99754 * 114.04675 * 23 13 11 29 29 H 1.09009 * 109.46889 * 300.00004 * 1 2 3 30 30 H 1.08999 * 109.47490 * 59.99749 * 1 2 3 31 31 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47314 * 240.00044 * 2 1 3 33 33 H 1.09004 * 109.46777 * 59.99716 * 3 2 1 34 34 H 1.08998 * 109.47395 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46931 * 300.00594 * 3 2 1 36 36 H 0.97002 * 120.00149 * 334.99676 * 4 2 1 37 37 H 1.08998 * 109.46753 * 179.97438 * 9 7 5 38 38 H 1.08992 * 109.47241 * 300.00078 * 9 7 5 39 39 H 1.09003 * 109.46610 * 60.00156 * 9 7 5 40 40 H 0.97005 * 119.99753 * 25.00020 * 10 7 5 41 41 H 0.96998 * 119.99802 * 180.27689 * 18 17 15 42 42 H 1.07999 * 120.00395 * 0.02562 * 24 23 13 43 43 H 1.07998 * 119.99653 * 180.27346 * 25 24 23 44 44 H 1.07997 * 120.00121 * 179.83516 * 26 25 24 45 45 H 1.07996 * 120.00210 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00194 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1988 0.2026 7 6 3.7424 -1.9702 2.4245 8 1 3.0698 -2.7923 2.6690 9 6 3.7938 -0.9875 3.5962 10 7 5.0857 -2.4967 2.1702 11 6 5.5381 -3.5556 2.8705 12 8 4.8332 -4.0730 3.7108 13 6 6.9197 -4.0976 2.6085 14 1 6.9932 -4.4182 1.5694 15 6 7.9404 -3.0215 2.8756 16 1 7.7637 -2.2900 3.6502 17 6 9.0997 -2.9709 2.1310 18 7 10.0599 -2.1366 2.4651 19 14 9.3034 -4.0818 0.6431 20 1 9.8101 -5.4073 1.0808 21 1 7.9914 -4.2513 -0.0314 22 1 10.2709 -3.4698 -0.3027 23 6 7.1787 -5.2727 3.5158 24 6 7.2668 -5.0845 4.8824 25 6 7.5000 -6.1631 5.7149 26 6 7.6543 -7.4284 5.1801 27 6 7.5715 -7.6158 3.8130 28 6 7.3340 -6.5378 2.9808 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.4623 -0.7387 1.9894 37 1 4.1565 -1.5019 4.4860 38 1 4.4663 -0.1654 3.3516 39 1 2.7945 -0.5954 3.7855 40 1 5.6495 -2.0831 1.4978 41 1 10.8739 -2.0981 1.9389 42 1 7.1496 -4.0954 5.3000 43 1 7.5644 -6.0168 6.7830 44 1 7.8392 -8.2707 5.8303 45 1 7.6917 -8.6043 3.3952 46 1 7.2692 -6.6842 1.9127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434084529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:19 Heat of formation + Delta-G solvation = -61.955327 kcal Electronic energy + Delta-G solvation = -26966.738660 eV Core-core repulsion = 23241.706444 eV Total energy + Delta-G solvation = -3725.032216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23105 -39.13050 -37.85099 -36.15239 -34.48308 -33.61804 -31.93149 -31.44633 -30.08481 -29.80417 -27.57737 -27.47409 -24.64809 -23.50505 -21.87804 -21.69926 -20.88213 -20.15243 -19.39009 -17.42874 -17.08083 -16.63641 -16.04045 -15.82464 -15.23515 -15.20848 -14.59692 -14.33513 -14.24414 -13.98772 -13.71635 -13.46122 -13.11091 -12.97206 -12.71940 -12.62264 -12.60243 -12.44035 -12.25915 -12.19804 -11.93188 -11.85475 -11.61716 -11.42218 -11.19320 -11.08508 -10.98459 -10.40407 -10.23492 -9.88094 -9.75377 -9.52459 -9.23677 -8.95021 -8.68089 -8.50831 -8.08845 -7.77804 -6.26349 -4.29861 2.19863 2.26311 2.61288 2.94620 3.23393 3.27972 3.31146 3.55729 3.95501 4.27810 4.52640 4.67409 4.73111 4.81461 4.99050 5.05605 5.22101 5.29621 5.31362 5.43390 5.52169 5.58638 5.60489 5.65257 5.66482 5.76971 5.84584 5.91613 5.99567 6.04766 6.13129 6.30383 6.34500 6.36671 6.37889 6.50857 6.78503 6.89611 7.00854 7.21424 7.29324 7.32559 7.40150 7.64517 7.84715 8.15363 8.22659 8.30870 8.73001 9.08334 9.32485 10.84764 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003826 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.074775 B = 7316.300113 C = 8335.431069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.528 6.528 7 C 0.127 3.873 8 H 0.108 0.892 9 C -0.156 4.156 10 N -0.711 5.711 11 C 0.540 3.460 12 O -0.562 6.562 13 C 0.023 3.977 14 H 0.070 0.930 15 C -0.512 4.512 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.881 5.881 19 Si 0.863 3.137 20 H -0.267 1.267 21 H -0.262 1.262 22 H -0.284 1.284 23 C -0.026 4.026 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.136 4.136 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.415 0.585 41 H 0.269 0.731 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 2.080 -1.606 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.380 5.380 5 C 0.298 3.702 6 O -0.403 6.403 7 C 0.018 3.982 8 H 0.126 0.874 9 C -0.215 4.215 10 N -0.366 5.366 11 C 0.330 3.670 12 O -0.441 6.441 13 C 0.002 3.998 14 H 0.088 0.912 15 C -0.549 4.549 16 H 0.101 0.899 17 C -0.117 4.117 18 N -0.516 5.516 19 Si 0.690 3.310 20 H -0.192 1.192 21 H -0.187 1.187 22 H -0.210 1.210 23 C -0.027 4.027 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.827 1.846 -1.805 16.037 hybrid contribution 0.321 -0.264 -0.742 0.851 sum -15.506 1.582 -2.547 15.793 Atomic orbital electron populations 1.22073 0.94192 1.02628 1.02860 1.20934 0.93832 0.93132 0.89003 1.22192 1.02478 0.95671 1.01916 1.46062 1.17912 1.57235 1.16832 1.20873 0.81341 0.78252 0.89704 1.90716 1.55859 1.58974 1.34791 1.20620 0.88094 0.97348 0.92171 0.87435 1.22123 1.01879 0.99212 0.98301 1.45721 1.14535 1.33593 1.42728 1.21171 0.88682 0.77874 0.79306 1.90581 1.58994 1.60233 1.34303 1.18486 0.90940 0.93738 0.96644 0.91242 1.20495 1.01467 1.11743 1.21244 0.89949 1.24955 0.95024 0.94709 0.97035 1.69875 1.06170 1.36623 1.38927 0.87001 0.78648 0.81816 0.83540 1.19208 1.18667 1.20998 1.20053 0.94592 0.93380 0.94641 1.20832 0.96758 0.98237 0.93081 1.21024 1.01605 0.93133 0.99038 1.20851 1.03559 0.96792 0.94964 1.20871 1.02075 0.97948 0.93814 1.20974 1.02635 0.92775 0.98996 0.92040 0.90998 0.91956 0.89432 0.92480 0.91808 0.91769 0.76532 0.90473 0.91668 0.92039 0.74721 0.92142 0.86495 0.87167 0.87381 0.87312 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.38 37.16 0.35 -0.64 16 2 C 0.14 1.24 3.18 -67.93 -0.22 1.03 16 3 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 4 N -0.73 -7.30 4.97 -53.81 -0.27 -7.57 16 5 C 0.51 7.29 7.19 -10.99 -0.08 7.21 16 6 O -0.53 -9.50 15.50 5.56 0.09 -9.41 16 7 C 0.13 1.91 2.99 -69.08 -0.21 1.71 16 8 H 0.11 1.58 7.58 -51.93 -0.39 1.19 16 9 C -0.16 -2.06 9.38 37.16 0.35 -1.71 16 10 N -0.71 -13.61 4.85 -54.93 -0.27 -13.88 16 11 C 0.54 11.76 7.01 -10.98 -0.08 11.69 16 12 O -0.56 -12.85 15.09 5.56 0.08 -12.77 16 13 C 0.02 0.54 1.98 -94.07 -0.19 0.36 16 14 H 0.07 1.62 4.81 -51.93 -0.25 1.37 16 15 C -0.51 -13.36 8.00 -34.44 -0.28 -13.64 16 16 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 18 N -0.88 -25.36 13.96 55.43 0.77 -24.59 16 19 Si 0.86 20.51 27.32 -169.99 -4.64 15.87 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.26 -5.92 6.40 56.52 0.36 -5.56 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.03 -0.58 4.30 -104.62 -0.45 -1.03 16 24 C -0.07 -1.56 8.32 -39.58 -0.33 -1.89 16 25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.14 -2.55 10.05 -39.59 -0.40 -2.95 16 27 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 28 C -0.14 -2.82 9.67 -39.58 -0.38 -3.21 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 2.92 8.02 -40.82 -0.33 2.59 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 40 H 0.42 8.36 7.68 -40.82 -0.31 8.05 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.12 2.65 7.89 -52.49 -0.41 2.23 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.08 7.95 -52.49 -0.42 1.66 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -31.97 383.52 -8.05 -40.02 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -7.15 Total: 14.11 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.44 Total: -7.56 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.24 Total: -46.04 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.17 Total: -22.18 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.64 Total: 15.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.97 -8.05 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434084529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.939 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds