Wall clock time and date at job start Tue Mar 31 2020 12:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47547 * 2 1 4 4 N 1.46496 * 109.47397 * 120.00291 * 2 1 3 5 5 C 1.34775 * 120.00508 * 154.99709 * 4 2 1 6 6 O 1.21280 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00441 * 180.02562 * 5 4 2 8 8 H 1.09005 * 109.46981 * 59.99791 * 7 5 4 9 9 C 1.53005 * 109.46877 * 299.99874 * 7 5 4 10 10 N 1.46501 * 109.47313 * 180.02562 * 7 5 4 11 11 C 1.34774 * 119.99791 * 204.99765 * 10 7 5 12 12 O 1.21274 * 120.00648 * 0.02562 * 11 10 7 13 13 C 1.50704 * 119.99630 * 179.97438 * 11 10 7 14 14 H 1.08991 * 109.47396 * 300.00183 * 13 11 10 15 15 C 1.50705 * 109.47007 * 60.00379 * 13 11 10 16 16 H 1.07999 * 119.99926 * 32.98420 * 15 13 11 17 17 C 1.37872 * 119.99738 * 212.98412 * 15 13 11 18 18 N 1.31521 * 119.99776 * 188.11819 * 17 15 13 19 19 Si 1.86801 * 120.00305 * 8.39738 * 17 15 13 20 20 H 1.48500 * 109.46902 * 275.03817 * 19 17 15 21 21 H 1.48497 * 109.47001 * 35.04149 * 19 17 15 22 22 H 1.48496 * 109.47043 * 155.03992 * 19 17 15 23 23 C 1.50703 * 109.46827 * 180.02562 * 13 11 10 24 24 C 1.38234 * 119.99953 * 293.76853 * 23 13 11 25 25 C 1.38240 * 119.99463 * 179.78663 * 24 23 13 26 26 C 1.38231 * 120.00233 * 0.44802 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.80745 * 26 25 24 28 28 C 1.38234 * 119.99754 * 114.04675 * 23 13 11 29 29 H 1.09009 * 109.46889 * 300.00004 * 1 2 3 30 30 H 1.08999 * 109.47490 * 59.99749 * 1 2 3 31 31 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47314 * 240.00044 * 2 1 3 33 33 H 1.09004 * 109.46777 * 59.99716 * 3 2 1 34 34 H 1.08998 * 109.47395 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46931 * 300.00594 * 3 2 1 36 36 H 0.97002 * 120.00149 * 334.99676 * 4 2 1 37 37 H 1.08998 * 109.46753 * 179.97438 * 9 7 5 38 38 H 1.08992 * 109.47241 * 300.00078 * 9 7 5 39 39 H 1.09003 * 109.46610 * 60.00156 * 9 7 5 40 40 H 0.97005 * 119.99753 * 25.00020 * 10 7 5 41 41 H 0.96998 * 119.99802 * 180.27689 * 18 17 15 42 42 H 1.07999 * 120.00395 * 0.02562 * 24 23 13 43 43 H 1.07998 * 119.99653 * 180.27346 * 25 24 23 44 44 H 1.07997 * 120.00121 * 179.83516 * 26 25 24 45 45 H 1.07996 * 120.00210 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00194 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1988 0.2026 7 6 3.7424 -1.9702 2.4245 8 1 3.0698 -2.7923 2.6690 9 6 3.7938 -0.9875 3.5962 10 7 5.0857 -2.4967 2.1702 11 6 5.5381 -3.5556 2.8705 12 8 4.8332 -4.0730 3.7108 13 6 6.9197 -4.0976 2.6085 14 1 6.9932 -4.4182 1.5694 15 6 7.9404 -3.0215 2.8756 16 1 7.7637 -2.2900 3.6502 17 6 9.0997 -2.9709 2.1310 18 7 10.0599 -2.1366 2.4651 19 14 9.3034 -4.0818 0.6431 20 1 9.8101 -5.4073 1.0808 21 1 7.9914 -4.2513 -0.0314 22 1 10.2709 -3.4698 -0.3027 23 6 7.1787 -5.2727 3.5158 24 6 7.2668 -5.0845 4.8824 25 6 7.5000 -6.1631 5.7149 26 6 7.6543 -7.4284 5.1801 27 6 7.5715 -7.6158 3.8130 28 6 7.3340 -6.5378 2.9808 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.4623 -0.7387 1.9894 37 1 4.1565 -1.5019 4.4860 38 1 4.4663 -0.1654 3.3516 39 1 2.7945 -0.5954 3.7855 40 1 5.6495 -2.0831 1.4978 41 1 10.8739 -2.0981 1.9389 42 1 7.1496 -4.0954 5.3000 43 1 7.5644 -6.0168 6.7830 44 1 7.8392 -8.2707 5.8303 45 1 7.6917 -8.6043 3.3952 46 1 7.2692 -6.6842 1.9127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434084529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:18 Heat of formation + Delta-G solvation = -83.499527 kcal Electronic energy + Delta-G solvation = -26967.672887 eV Core-core repulsion = 23241.706444 eV Total energy + Delta-G solvation = -3725.966442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53273 -40.63305 -39.37344 -37.12342 -35.90884 -35.53250 -33.42693 -32.91096 -31.61404 -31.02675 -29.27011 -28.08909 -26.01571 -25.23942 -23.37352 -22.96253 -22.00689 -21.34006 -21.01242 -19.14129 -18.77538 -17.92131 -17.46184 -17.24382 -16.57803 -16.39143 -16.20497 -15.88797 -15.53598 -15.25364 -15.10407 -14.86115 -14.62439 -14.37563 -14.18223 -14.00268 -13.80030 -13.50969 -13.47386 -13.32348 -13.15891 -13.04097 -12.94371 -12.77167 -12.65974 -12.30262 -12.03843 -11.99371 -11.91595 -11.63937 -11.42490 -10.97986 -10.89278 -10.59536 -10.20017 -10.04676 -9.63083 -9.36792 -8.36664 -6.42883 0.65350 0.71969 1.33346 1.34141 1.40485 1.45852 1.79627 1.90090 2.28494 2.53085 2.94504 3.16932 3.57652 3.95119 3.98449 4.07552 4.11387 4.16341 4.21832 4.28473 4.32367 4.37574 4.40677 4.57627 4.62868 4.73195 4.76112 4.77465 4.83352 4.91115 4.93896 5.01696 5.16962 5.19408 5.26860 5.33257 5.33613 5.39687 5.49522 5.52542 5.71043 5.75249 5.95461 6.19118 6.31258 6.44451 6.58128 6.60412 7.12728 7.21783 7.37010 8.78105 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003826 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.074775 B = 7316.300113 C = 8335.431069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.705 5.705 5 C 0.516 3.484 6 O -0.571 6.571 7 C 0.122 3.878 8 H 0.116 0.884 9 C -0.149 4.149 10 N -0.711 5.711 11 C 0.539 3.461 12 O -0.576 6.576 13 C 0.023 3.977 14 H 0.070 0.930 15 C -0.500 4.500 16 H 0.042 0.958 17 C 0.039 3.961 18 N -0.928 5.928 19 Si 0.917 3.083 20 H -0.260 1.260 21 H -0.246 1.246 22 H -0.283 1.283 23 C -0.055 4.055 24 C -0.100 4.100 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.125 4.125 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.409 0.591 41 H 0.270 0.730 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 0.347 -1.663 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 C -0.219 4.219 4 N -0.358 5.358 5 C 0.302 3.698 6 O -0.450 6.450 7 C 0.014 3.986 8 H 0.133 0.867 9 C -0.207 4.207 10 N -0.363 5.363 11 C 0.328 3.672 12 O -0.456 6.456 13 C 0.002 3.998 14 H 0.088 0.912 15 C -0.538 4.538 16 H 0.061 0.939 17 C -0.162 4.162 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.185 1.185 21 H -0.170 1.170 22 H -0.208 1.208 23 C -0.056 4.056 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.172 4.172 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.245 0.755 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.154 0.846 44 H 0.169 0.831 45 H 0.165 0.835 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.052 0.134 -1.843 18.147 hybrid contribution 0.890 0.296 -0.621 1.125 sum -17.162 0.429 -2.464 17.344 Atomic orbital electron populations 1.22022 0.91134 1.03256 1.04411 1.21094 0.96072 0.92706 0.87457 1.22162 1.00339 0.95815 1.03575 1.45937 1.16396 1.55539 1.17969 1.20668 0.82271 0.78306 0.88587 1.90702 1.57379 1.60906 1.36044 1.20886 0.86079 0.98121 0.93497 0.86681 1.22071 1.04293 0.98060 0.96304 1.45736 1.16120 1.32703 1.41743 1.20898 0.88293 0.78523 0.79521 1.90550 1.59240 1.60942 1.34885 1.18429 0.90963 0.93479 0.96949 0.91239 1.20445 1.02168 1.11590 1.19564 0.93926 1.25651 0.94682 0.96139 0.99679 1.69997 1.06999 1.38980 1.40575 0.86134 0.79264 0.80144 0.80339 1.18469 1.16990 1.20834 1.20044 0.96697 0.94024 0.94806 1.20819 0.99119 0.98324 0.93617 1.21361 1.00497 0.93014 1.00141 1.21349 1.01291 0.97252 0.95458 1.21343 1.00067 0.98858 0.93982 1.21231 1.03123 0.92724 1.00106 0.90274 0.89671 0.91799 0.91769 0.90899 0.95051 0.90090 0.74526 0.92650 0.92732 0.87427 0.75510 0.92099 0.89042 0.84612 0.83139 0.83485 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.38 71.98 0.68 -0.74 16 2 C 0.13 2.21 3.18 44.99 0.14 2.36 16 3 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 4 N -0.71 -13.12 4.97 -442.54 -2.20 -15.32 16 5 C 0.52 14.67 7.19 87.66 0.63 15.30 16 6 O -0.57 -21.19 15.50 -3.03 -0.05 -21.23 16 7 C 0.12 3.71 2.99 44.25 0.13 3.84 16 8 H 0.12 3.34 7.58 -2.38 -0.02 3.32 16 9 C -0.15 -3.89 9.38 71.98 0.68 -3.22 16 10 N -0.71 -28.32 4.85 -446.09 -2.16 -30.49 16 11 C 0.54 24.36 7.01 87.66 0.61 24.97 16 12 O -0.58 -27.02 15.09 -3.01 -0.05 -27.06 16 13 C 0.02 1.12 1.98 -13.03 -0.03 1.09 16 14 H 0.07 3.28 4.81 -2.39 -0.01 3.27 16 15 C -0.50 -27.51 8.00 25.60 0.20 -27.30 16 16 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 17 C 0.04 2.19 5.47 84.65 0.46 2.65 16 18 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 19 Si 0.92 42.88 27.32 68.60 1.87 44.76 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.25 -10.74 6.40 99.48 0.64 -10.10 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.05 -2.52 4.30 -19.87 -0.09 -2.61 16 24 C -0.10 -4.53 8.32 22.27 0.19 -4.34 16 25 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 26 C -0.14 -4.34 10.05 22.27 0.22 -4.11 16 27 C -0.12 -4.17 10.05 22.27 0.22 -3.94 16 28 C -0.15 -6.19 9.67 22.27 0.22 -5.97 16 29 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 1.42 7.58 -2.39 -0.02 1.41 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.42 4.93 8.02 -92.71 -0.74 4.18 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.77 7.56 -2.39 -0.02 1.75 16 40 H 0.41 17.36 7.68 -92.70 -0.71 16.65 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.09 4.44 7.89 -2.91 -0.02 4.42 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.12 4.36 7.95 -2.91 -0.02 4.33 16 Total: -1.00 -73.99 383.52 2.36 -71.63 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.54 Total: 41.85 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.18 Total: -8.65 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.06 Total: -101.29 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.09 Total: -48.30 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.87 Total: 44.76 kcal Total: -73.99 2.36 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434084529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.868 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds