Wall clock time and date at job start Tue Mar 31 2020 12:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99756 * 2 1 4 4 H 1.09003 * 109.47290 * 329.99769 * 3 2 1 5 5 C 1.52996 * 109.47234 * 89.99616 * 3 2 1 6 6 C 1.50697 * 109.46951 * 209.99862 * 3 2 1 7 7 O 1.21283 * 120.00265 * 354.04935 * 6 3 2 8 8 N 1.34783 * 119.99774 * 174.05146 * 6 3 2 9 9 C 1.46505 * 119.99731 * 185.52430 * 8 6 3 10 10 C 1.53004 * 109.46799 * 183.95618 * 9 8 6 11 11 H 1.09001 * 109.43674 * 305.78798 * 10 9 8 12 12 C 1.50808 * 109.43482 * 185.87511 * 10 9 8 13 13 C 1.38834 * 117.80971 * 48.40712 * 12 10 9 14 14 C 1.37960 * 120.50524 * 179.50672 * 13 12 10 15 15 C 1.38268 * 119.71782 * 359.92623 * 14 13 12 16 16 C 1.37912 * 119.82632 * 0.27125 * 15 14 13 17 17 C 1.37676 * 122.34302 * 228.34634 * 12 10 9 18 18 C 1.50596 * 122.85923 * 1.51517 * 17 12 10 19 19 C 1.52780 * 110.85569 * 339.80166 * 18 17 12 20 20 N 1.46683 * 109.43874 * 65.70581 * 10 9 8 21 21 C 1.36940 * 121.33279 * 344.47464 * 20 10 9 22 22 H 1.08007 * 120.00077 * 321.87218 * 21 20 10 23 23 C 1.38811 * 119.99936 * 141.87493 * 21 20 10 24 24 N 1.31613 * 120.00017 * 3.35957 * 23 21 20 25 25 Si 1.86804 * 119.99740 * 183.36179 * 23 21 20 26 26 H 1.48500 * 109.46909 * 65.02164 * 25 23 21 27 27 H 1.48502 * 109.46820 * 185.01789 * 25 23 21 28 28 H 1.48498 * 109.47526 * 305.02010 * 25 23 21 29 29 H 1.09005 * 109.46582 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47235 * 300.00128 * 1 2 3 31 31 H 1.09005 * 109.47075 * 60.00533 * 1 2 3 32 32 H 1.09000 * 109.47351 * 184.99845 * 5 3 2 33 33 H 1.09001 * 109.47472 * 305.00373 * 5 3 2 34 34 H 1.09004 * 109.47167 * 64.99881 * 5 3 2 35 35 H 0.96998 * 120.00360 * 5.52106 * 8 6 3 36 36 H 1.08999 * 109.47142 * 303.95431 * 9 8 6 37 37 H 1.09003 * 109.47050 * 63.95707 * 9 8 6 38 38 H 1.08002 * 119.74603 * 359.48343 * 13 12 10 39 39 H 1.08000 * 120.13857 * 179.90649 * 14 13 12 40 40 H 1.08001 * 120.08503 * 180.24619 * 15 14 13 41 41 H 1.07996 * 119.70800 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.20346 * 100.16198 * 18 17 12 43 43 H 1.09002 * 109.19515 * 219.45007 * 18 17 12 44 44 H 1.09000 * 109.77407 * 167.07670 * 19 18 17 45 45 H 1.09005 * 109.77819 * 287.81547 * 19 18 17 46 46 H 0.97006 * 119.99767 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3386 1.2639 -0.7104 7 8 3.7979 0.2026 -1.0760 8 7 4.0164 2.4062 -0.9393 9 6 5.2465 2.3812 -1.7346 10 6 5.8659 3.7800 -1.7599 11 1 5.1243 4.4988 -2.1084 12 6 7.0498 3.7877 -2.6941 13 6 6.8827 3.2338 -3.9561 14 6 7.9259 3.2205 -4.8588 15 6 9.1465 3.7646 -4.5038 16 6 9.3148 4.3114 -3.2490 17 6 8.2676 4.3204 -2.3354 18 6 8.5332 4.9090 -0.9749 19 6 7.2254 5.2846 -0.2800 20 7 6.3022 4.1453 -0.4080 21 6 5.8673 3.4545 0.6916 22 1 4.8478 3.1010 0.7389 23 6 6.7367 3.2086 1.7454 24 7 7.9590 3.6959 1.7175 25 14 6.1718 2.1862 3.2031 26 1 5.8978 0.7967 2.7566 27 1 7.2351 2.1724 4.2397 28 1 4.9337 2.7766 3.7719 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.5776 2.8003 1.4438 33 1 1.2718 1.7167 1.9815 34 1 2.9511 1.1292 1.9299 35 1 3.6897 3.2449 -0.5776 36 1 5.9522 1.6793 -1.2903 37 1 5.0147 2.0680 -2.7526 38 1 5.9289 2.8097 -4.2331 39 1 7.7898 2.7867 -5.8384 40 1 9.9660 3.7609 -5.2073 41 1 10.2688 4.7362 -2.9739 42 1 9.0658 4.1785 -0.3660 43 1 9.1499 5.8010 -1.0845 44 1 7.4135 5.4902 0.7737 45 1 6.7944 6.1654 -0.7562 46 1 8.5667 3.5238 2.4538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755172434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:37 Heat of formation + Delta-G solvation = -40.542083 kcal Electronic energy + Delta-G solvation = -28042.296009 eV Core-core repulsion = 24318.192341 eV Total energy + Delta-G solvation = -3724.103668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25326 -40.53484 -38.63509 -37.73527 -35.78761 -34.05597 -33.68721 -32.28957 -31.50389 -30.05428 -28.09671 -27.67826 -26.54728 -24.67817 -23.93916 -23.55287 -22.23028 -21.43862 -20.45576 -18.97563 -17.99808 -17.79410 -17.29111 -17.10264 -16.78417 -16.24767 -16.14766 -15.81528 -15.59081 -15.48797 -15.20994 -14.97646 -14.51709 -14.23650 -13.90747 -13.81638 -13.69614 -13.37210 -13.35913 -13.26295 -13.00362 -12.82959 -12.77311 -12.75761 -12.50021 -12.22882 -12.09030 -11.98629 -11.78560 -11.58847 -11.19557 -11.00677 -10.51715 -10.43402 -9.80527 -9.56307 -9.28346 -8.42067 -7.83391 -5.38815 0.58020 0.63089 1.39216 1.45992 1.48911 1.63122 2.00686 2.47447 2.97383 3.08163 3.34985 3.57447 3.70840 3.92868 4.01504 4.03894 4.10986 4.20774 4.26431 4.33632 4.48041 4.49749 4.57216 4.58595 4.65179 4.69591 4.78469 4.82958 4.85744 4.86155 5.00849 5.05693 5.16755 5.19877 5.27150 5.29640 5.50837 5.63655 5.68898 5.71907 5.76205 5.91080 6.04324 6.11199 6.27376 6.51124 6.64660 7.22745 7.30437 7.83249 8.45136 9.20963 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.005327 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.489911 B = 5254.937894 C = 7034.390312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.079 3.921 4 H 0.125 0.875 5 C -0.171 4.171 6 C 0.502 3.498 7 O -0.583 6.583 8 N -0.693 5.693 9 C 0.151 3.849 10 C 0.200 3.800 11 H 0.062 0.938 12 C -0.106 4.106 13 C -0.127 4.127 14 C -0.133 4.133 15 C -0.124 4.124 16 C -0.142 4.142 17 C -0.071 4.071 18 C -0.084 4.084 19 C 0.169 3.831 20 N -0.598 5.598 21 C -0.251 4.251 22 H 0.091 0.909 23 C -0.030 4.030 24 N -0.915 5.915 25 Si 0.931 3.069 26 H -0.302 1.302 27 H -0.300 1.300 28 H -0.259 1.259 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.414 0.586 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.016 0.984 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 2.967 -8.653 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.143 0.857 5 C -0.228 4.228 6 C 0.288 3.712 7 O -0.463 6.463 8 N -0.346 5.346 9 C 0.026 3.974 10 C 0.093 3.907 11 H 0.079 0.921 12 C -0.108 4.108 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.160 4.160 17 C -0.072 4.072 18 C -0.122 4.122 19 C 0.044 3.956 20 N -0.322 5.322 21 C -0.381 4.381 22 H 0.108 0.892 23 C -0.227 4.227 24 N -0.560 5.560 25 Si 0.760 3.240 26 H -0.230 1.230 27 H -0.226 1.226 28 H -0.183 1.183 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.253 0.747 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.034 0.966 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.461 2.055 -8.764 13.059 hybrid contribution 0.305 -0.331 1.442 1.510 sum -9.157 1.724 -7.322 11.850 Atomic orbital electron populations 1.23120 0.78536 1.04193 1.01620 1.88022 1.22134 1.26352 1.95148 1.21969 0.92160 0.87063 0.97029 0.85739 1.22272 1.03799 1.02238 0.94532 1.21078 0.87337 0.83592 0.79163 1.90650 1.70491 1.31475 1.53709 1.45934 1.25005 1.10142 1.53565 1.21196 0.85223 0.96956 0.93986 1.19794 0.92283 0.93178 0.85427 0.92088 1.20261 0.95771 0.99338 0.95449 1.21354 1.00348 0.99826 0.92964 1.21326 0.93080 1.00425 1.00244 1.21322 0.98305 0.98367 0.96226 1.21401 0.98461 1.01640 0.94493 1.19910 0.93363 0.97919 0.95973 1.20758 1.00041 0.99251 0.92188 1.20697 0.87990 0.87250 0.99709 1.44235 1.54706 1.33155 1.00107 1.19630 0.95096 1.28614 0.94739 0.89179 1.25895 0.95474 0.99459 1.01827 1.69977 1.06396 1.47385 1.32209 0.85919 0.78011 0.79419 0.80601 1.22989 1.22641 1.18317 0.88577 0.91995 0.92311 0.89510 0.88397 0.94551 0.74709 0.95154 0.90688 0.84947 0.83531 0.83710 0.85727 0.92011 0.92064 0.91137 0.96632 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -12.08 9.89 -130.01 -1.29 -13.37 16 3 C 0.08 2.19 3.13 29.85 0.09 2.28 16 4 H 0.13 2.37 7.79 -2.39 -0.02 2.35 16 5 C -0.17 -4.51 9.49 71.98 0.68 -3.83 16 6 C 0.50 18.68 7.16 87.66 0.63 19.31 16 7 O -0.58 -27.62 16.50 15.93 0.26 -27.35 16 8 N -0.69 -24.08 3.51 -463.03 -1.62 -25.71 16 9 C 0.15 5.82 4.35 86.38 0.38 6.19 16 10 C 0.20 7.64 2.99 44.25 0.13 7.78 16 11 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 12 C -0.11 -3.97 5.44 -19.82 -0.11 -4.08 16 13 C -0.13 -3.94 9.02 22.35 0.20 -3.74 16 14 C -0.13 -3.59 10.05 22.21 0.22 -3.36 16 15 C -0.12 -3.41 10.04 22.20 0.22 -3.19 16 16 C -0.14 -4.65 9.59 22.37 0.21 -4.44 16 17 C -0.07 -2.78 5.76 -19.85 -0.11 -2.89 16 18 C -0.08 -3.57 5.74 29.74 0.17 -3.39 16 19 C 0.17 7.57 5.57 86.17 0.48 8.05 16 20 N -0.60 -27.05 2.94 -680.20 -2.00 -29.05 16 21 C -0.25 -12.27 7.99 84.03 0.67 -11.60 16 22 H 0.09 4.08 4.80 -2.91 -0.01 4.07 16 23 C -0.03 -1.56 5.32 84.86 0.45 -1.11 16 24 N -0.91 -50.67 9.63 21.65 0.21 -50.46 16 25 Si 0.93 44.28 29.55 68.60 2.03 46.31 16 26 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 29 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.06 0.88 7.78 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.09 -2.38 -0.02 0.85 16 32 H 0.09 2.14 7.94 -2.39 -0.02 2.12 16 33 H 0.10 1.94 7.78 -2.39 -0.02 1.92 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.41 12.62 7.01 -92.71 -0.65 11.97 16 36 H 0.03 1.47 7.91 -2.39 -0.02 1.45 16 37 H 0.08 2.59 6.39 -2.39 -0.02 2.58 16 38 H 0.13 3.57 6.62 -2.91 -0.02 3.55 16 39 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.12 3.66 8.05 -2.91 -0.02 3.63 16 42 H 0.06 3.10 6.95 -2.39 -0.02 3.09 16 43 H 0.06 2.31 8.11 -2.39 -0.02 2.29 16 44 H 0.07 3.58 6.10 -2.39 -0.01 3.57 16 45 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -70.18 364.14 3.48 -66.70 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.34 Total: 29.36 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.55 Total: 3.58 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.41 Total: -105.22 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.02 Total: -40.72 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.18 3.48 -66.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755172434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.156 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds