Wall clock time and date at job start Tue Mar 31 2020 13:24:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46508 * 120.00031 * 2 1
4 4 C 1.50703 * 109.47009 * 270.00201 * 3 2 1
5 5 H 1.07995 * 119.99889 * 359.97438 * 4 3 2
6 6 C 1.37880 * 119.99628 * 179.97438 * 4 3 2
7 7 N 1.31513 * 120.00399 * 0.02562 * 6 4 3
8 8 Si 1.86804 * 119.99505 * 180.02562 * 6 4 3
9 9 H 1.48495 * 109.47035 * 60.00383 * 8 6 4
10 10 H 1.48497 * 109.46690 * 180.02562 * 8 6 4
11 11 H 1.48495 * 109.47137 * 299.99942 * 8 6 4
12 12 C 1.34773 * 120.00281 * 180.02562 * 2 1 3
13 13 O 1.21285 * 120.00349 * 174.53044 * 12 2 1
14 14 C 1.50700 * 119.99750 * 354.52067 * 12 2 1
15 15 C 1.53000 * 109.46985 * 186.18702 * 14 12 2
16 16 N 1.46900 * 109.46874 * 174.61964 * 15 14 12
17 17 C 1.46051 * 111.00053 * 65.18135 * 16 15 14
18 18 C 1.51348 * 113.61690 * 56.42798 * 17 16 15
19 19 O 1.43288 * 110.77593 * 65.22928 * 18 17 16
20 20 C 1.36133 * 115.32072 * 274.40018 * 19 18 17
21 21 C 1.38778 * 120.19335 * 249.23994 * 20 19 18
22 22 C 1.38201 * 119.66128 * 178.65807 * 21 20 19
23 23 C 1.38292 * 120.21409 * 359.74789 * 22 21 20
24 24 C 1.38384 * 120.11148 * 0.48780 * 23 22 21
25 25 C 1.37983 * 119.66588 * 0.10700 * 24 23 22
26 26 C 1.46730 * 111.00033 * 191.16284 * 16 15 14
27 27 H 1.09005 * 109.46836 * 266.86418 * 1 2 3
28 28 H 1.09002 * 109.47422 * 26.85587 * 1 2 3
29 29 H 1.08995 * 109.47322 * 146.86457 * 1 2 3
30 30 H 1.09007 * 109.46655 * 29.99967 * 3 2 1
31 31 H 1.08998 * 109.47139 * 150.00470 * 3 2 1
32 32 H 0.96990 * 120.00030 * 179.97438 * 7 6 4
33 33 H 1.08999 * 109.47040 * 66.18621 * 14 12 2
34 34 H 1.09000 * 109.47255 * 306.19074 * 14 12 2
35 35 H 1.08995 * 109.47077 * 54.62586 * 15 14 12
36 36 H 1.09002 * 109.47192 * 294.61735 * 15 14 12
37 37 H 1.08995 * 108.65543 * 295.36039 * 17 16 15
38 38 H 1.09002 * 108.54551 * 177.42071 * 17 16 15
39 39 H 1.08999 * 109.22134 * 304.88636 * 18 17 16
40 40 H 1.09001 * 109.17780 * 185.53545 * 18 17 16
41 41 H 1.07991 * 120.16973 * 358.68258 * 21 20 19
42 42 H 1.07997 * 119.89276 * 179.77777 * 22 21 20
43 43 H 1.07994 * 119.94132 * 180.46397 * 23 22 21
44 44 H 1.08005 * 120.16943 * 179.83542 * 24 23 22
45 45 H 1.08999 * 109.58508 * 78.92073 * 26 16 15
46 46 H 1.09001 * 109.58410 * 199.20185 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7038 -1.4209
5 1 2.0981 1.0959 -2.2417
6 6 3.1260 2.8781 -1.6727
7 7 3.5533 3.6182 -0.6732
8 14 3.4366 3.4177 -3.4340
9 1 2.1388 3.5950 -4.1335
10 1 4.1792 4.7036 -3.4339
11 1 4.2393 2.3831 -4.1344
12 6 2.1389 -1.1671 -0.0005
13 8 3.3476 -1.1695 -0.1006
14 6 1.3906 -2.4693 0.1235
15 6 2.3893 -3.6213 0.2515
16 7 1.6630 -4.8735 0.5012
17 6 0.8335 -5.2351 -0.6452
18 6 1.6083 -5.3576 -1.9396
19 8 2.5387 -6.4454 -1.8740
20 6 3.7451 -6.1468 -1.3184
21 6 4.8877 -6.1165 -2.1056
22 6 6.1022 -5.7849 -1.5357
23 6 6.1789 -5.4797 -0.1890
24 6 5.0403 -5.5148 0.5967
25 6 3.8298 -5.8577 0.0301
26 6 2.5844 -5.9471 0.8903
27 1 -0.3633 -0.0562 1.0262
28 1 -0.3634 0.9168 -0.4642
29 1 -0.3634 -0.8605 -0.5617
30 1 1.6083 2.0284 0.5139
31 1 3.1500 1.1384 0.5137
32 1 4.0301 4.4440 -0.8504
33 1 0.7739 -2.6198 -0.7626
34 1 0.7544 -2.4400 1.0081
35 1 3.0680 -3.4233 1.0811
36 1 2.9610 -3.7108 -0.6723
37 1 0.0624 -4.4751 -0.7711
38 1 0.3504 -6.1896 -0.4363
39 1 2.1521 -4.4307 -2.1214
40 1 0.9109 -5.5310 -2.7592
41 1 4.8279 -6.3504 -3.1582
42 1 6.9943 -5.7637 -2.1440
43 1 7.1290 -5.2139 0.2502
44 1 5.0995 -5.2791 1.6491
45 1 2.8562 -5.8330 1.9396
46 1 2.1032 -6.9137 0.7405
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000063012689.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:24:25
Heat of formation + Delta-G solvation = -32.411834 kcal
Electronic energy + Delta-G solvation = -27443.294881 eV
Core-core repulsion = 23719.543768 eV
Total energy + Delta-G solvation = -3723.751114 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.05577 -39.00055 -37.73983 -36.84991 -34.78890 -32.70649 -32.29089 -31.23157
-30.47090 -28.39667 -27.74604 -26.01934 -25.47498 -24.47139 -22.82089 -22.36993
-21.32728 -20.23243 -18.34756 -17.98774 -16.89562 -16.55541 -16.28700 -15.97299
-15.71695 -15.42820 -15.28961 -14.82844 -14.59901 -14.41295 -14.04177 -13.99173
-13.63395 -13.25800 -12.77472 -12.51594 -12.31999 -12.19657 -12.13785 -11.96595
-11.84887 -11.78693 -11.50313 -11.37350 -11.14898 -11.03933 -10.91022 -10.74662
-10.54887 -10.30213 -10.15295 -9.63958 -9.01211 -8.88087 -8.62296 -8.42986
-8.41396 -7.62761 -6.03732 -4.08297 1.08806 1.22485 3.24973 3.31369
3.35880 3.37835 3.45918 3.64988 3.86342 4.17646 4.45657 4.55371
4.61668 4.82408 4.85621 4.95345 4.97726 5.10566 5.18006 5.25270
5.28966 5.30291 5.36194 5.36820 5.47793 5.53368 5.63085 5.67321
5.71679 5.85689 5.88160 5.91798 6.07068 6.14629 6.21486 6.22113
6.35100 6.39464 6.60161 6.88184 6.95164 7.07182 7.32515 7.43624
7.55457 7.92459 8.24260 8.43538 8.90814 9.11103 9.56600 11.04347
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014143 B = 0.003593 C = 0.003274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.274676 B = 7791.369703 C = 8551.332328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.604 5.604
3 C 0.246 3.754
4 C -0.525 4.525
5 H 0.055 0.945
6 C 0.061 3.939
7 N -0.896 5.896
8 Si 0.897 3.103
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.277 1.277
12 C 0.503 3.497
13 O -0.541 6.541
14 C -0.136 4.136
15 C 0.069 3.931
16 N -0.530 5.530
17 C 0.021 3.979
18 C 0.023 3.977
19 O -0.327 6.327
20 C 0.096 3.904
21 C -0.132 4.132
22 C -0.103 4.103
23 C -0.124 4.124
24 C -0.089 4.089
25 C -0.148 4.148
26 C 0.100 3.900
27 H 0.044 0.956
28 H 0.074 0.926
29 H 0.054 0.946
30 H 0.032 0.968
31 H 0.041 0.959
32 H 0.264 0.736
33 H 0.082 0.918
34 H 0.094 0.906
35 H 0.083 0.917
36 H 0.048 0.952
37 H 0.091 0.909
38 H 0.082 0.918
39 H 0.065 0.935
40 H 0.103 0.897
41 H 0.128 0.872
42 H 0.126 0.874
43 H 0.126 0.874
44 H 0.128 0.872
45 H 0.088 0.912
46 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.173 -20.655 1.773 21.147
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.336 5.336
3 C 0.127 3.873
4 C -0.563 4.563
5 H 0.074 0.926
6 C -0.141 4.141
7 N -0.535 5.535
8 Si 0.725 3.275
9 H -0.203 1.203
10 H -0.211 1.211
11 H -0.202 1.202
12 C 0.289 3.711
13 O -0.419 6.419
14 C -0.177 4.177
15 C -0.058 4.058
16 N -0.251 5.251
17 C -0.108 4.108
18 C -0.053 4.053
19 O -0.244 6.244
20 C 0.053 3.947
21 C -0.151 4.151
22 C -0.122 4.122
23 C -0.142 4.142
24 C -0.108 4.108
25 C -0.151 4.151
26 C -0.027 4.027
27 H 0.062 0.938
28 H 0.093 0.907
29 H 0.073 0.927
30 H 0.050 0.950
31 H 0.059 0.941
32 H 0.073 0.927
33 H 0.101 0.899
34 H 0.112 0.888
35 H 0.102 0.898
36 H 0.066 0.934
37 H 0.109 0.891
38 H 0.100 0.900
39 H 0.083 0.917
40 H 0.121 0.879
41 H 0.145 0.855
42 H 0.144 0.856
43 H 0.144 0.856
44 H 0.146 0.854
45 H 0.106 0.894
46 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -3.855 -20.545 2.103 21.009
hybrid contribution 0.667 0.571 -1.706 1.918
sum -3.188 -19.974 0.397 20.231
Atomic orbital electron populations
1.21606 0.81457 1.02557 1.00221 1.48159 1.06144 1.07843 1.71494
1.19272 0.92418 0.78179 0.97431 1.21385 1.36520 1.06135 0.92304
0.92638 1.24930 0.95381 0.96401 0.97372 1.69916 1.38411 1.14384
1.30763 0.86573 0.78349 0.77820 0.84762 1.20259 1.21138 1.20240
1.20279 0.88044 0.85096 0.77664 1.90680 1.14342 1.87181 1.49689
1.21670 0.99283 0.93057 1.03668 1.21876 0.94921 0.86953 1.02085
1.61886 1.24225 1.03522 1.35513 1.22356 0.96753 1.02886 0.88816
1.23235 0.92341 0.89991 0.99732 1.86325 1.22277 1.35400 1.80394
1.18529 0.85974 0.99537 0.90703 1.21201 0.92293 1.01684 0.99911
1.21056 0.97213 0.98649 0.95250 1.21227 0.98750 1.00135 0.94105
1.20976 0.91509 0.98163 1.00122 1.21023 0.97476 1.02094 0.94468
1.21376 0.88197 0.95002 0.98147 0.93763 0.90750 0.92707 0.95032
0.94052 0.92676 0.89922 0.88765 0.89807 0.93426 0.89092 0.89978
0.91658 0.87868 0.85454 0.85571 0.85642 0.85426 0.89383 0.89657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.34 10.06 59.85 0.60 1.95 16
2 N -0.60 -12.84 2.86 -182.94 -0.52 -13.36 16
3 C 0.25 6.50 5.11 -5.19 -0.03 6.47 16
4 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16
5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16
6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
7 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16
8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16
9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 C 0.50 10.42 7.64 -10.99 -0.08 10.34 16
13 O -0.54 -13.67 15.62 5.55 0.09 -13.59 16
14 C -0.14 -2.00 4.04 -27.88 -0.11 -2.11 16
15 C 0.07 1.00 3.02 -3.82 -0.01 0.99 16
16 N -0.53 -6.18 4.84 -237.42 -1.15 -7.33 16
17 C 0.02 0.21 5.16 -5.12 -0.03 0.18 16
18 C 0.02 0.26 6.24 36.32 0.23 0.48 16
19 O -0.33 -4.20 10.04 -20.16 -0.20 -4.40 16
20 C 0.10 1.28 5.21 -39.41 -0.21 1.07 16
21 C -0.13 -1.65 10.01 -39.40 -0.39 -2.05 16
22 C -0.10 -1.19 10.03 -39.58 -0.40 -1.59 16
23 C -0.12 -1.43 10.05 -39.51 -0.40 -1.83 16
24 C -0.09 -1.06 9.68 -39.62 -0.38 -1.44 16
25 C -0.15 -1.85 3.50 -104.29 -0.36 -2.21 16
26 C 0.10 1.10 5.74 -4.61 -0.03 1.07 16
27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16
29 H 0.05 0.70 6.79 -51.93 -0.35 0.35 16
30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16
31 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16
32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16
33 H 0.08 1.06 6.32 -51.93 -0.33 0.73 16
34 H 0.09 1.22 8.02 -51.93 -0.42 0.81 16
35 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16
36 H 0.05 0.79 4.99 -51.93 -0.26 0.53 16
37 H 0.09 0.81 6.72 -51.93 -0.35 0.46 16
38 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16
39 H 0.07 0.85 6.10 -51.93 -0.32 0.53 16
40 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16
41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
42 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16
43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
44 H 0.13 1.30 7.99 -52.48 -0.42 0.88 16
45 H 0.09 0.87 7.93 -51.93 -0.41 0.45 16
46 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16
LS Contribution 366.52 15.07 5.52 5.52
Total: -1.00 -34.20 366.52 -9.53 -43.74
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: -6.97 Total: 0.83 kcal
Atomic # 6 Polarization: -0.34 SS G_CDS: -2.02 Total: -2.36 kcal
Atomic # 7 Polarization: -45.81 SS G_CDS: -0.93 Total: -46.75 kcal
Atomic # 8 Polarization: -17.87 SS G_CDS: -0.12 Total: -17.99 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -34.20 -9.53 -43.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063012689.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.324 kcal
(2) G-P(sol) polarization free energy of solvation -34.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds