Wall clock time and date at job start Tue Mar 31 2020 13:24:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46508 * 120.00031 * 2 1
4 4 C 1.50703 * 109.47009 * 270.00201 * 3 2 1
5 5 H 1.07995 * 119.99889 * 359.97438 * 4 3 2
6 6 C 1.37880 * 119.99628 * 179.97438 * 4 3 2
7 7 N 1.31513 * 120.00399 * 0.02562 * 6 4 3
8 8 Si 1.86804 * 119.99505 * 180.02562 * 6 4 3
9 9 H 1.48495 * 109.47035 * 60.00383 * 8 6 4
10 10 H 1.48497 * 109.46690 * 180.02562 * 8 6 4
11 11 H 1.48495 * 109.47137 * 299.99942 * 8 6 4
12 12 C 1.34773 * 120.00281 * 180.02562 * 2 1 3
13 13 O 1.21285 * 120.00349 * 174.53044 * 12 2 1
14 14 C 1.50700 * 119.99750 * 354.52067 * 12 2 1
15 15 C 1.53000 * 109.46985 * 186.18702 * 14 12 2
16 16 N 1.46900 * 109.46874 * 174.61964 * 15 14 12
17 17 C 1.46051 * 111.00053 * 65.18135 * 16 15 14
18 18 C 1.51348 * 113.61690 * 56.42798 * 17 16 15
19 19 O 1.43288 * 110.77593 * 65.22928 * 18 17 16
20 20 C 1.36133 * 115.32072 * 274.40018 * 19 18 17
21 21 C 1.38778 * 120.19335 * 249.23994 * 20 19 18
22 22 C 1.38201 * 119.66128 * 178.65807 * 21 20 19
23 23 C 1.38292 * 120.21409 * 359.74789 * 22 21 20
24 24 C 1.38384 * 120.11148 * 0.48780 * 23 22 21
25 25 C 1.37983 * 119.66588 * 0.10700 * 24 23 22
26 26 C 1.46730 * 111.00033 * 191.16284 * 16 15 14
27 27 H 1.09005 * 109.46836 * 266.86418 * 1 2 3
28 28 H 1.09002 * 109.47422 * 26.85587 * 1 2 3
29 29 H 1.08995 * 109.47322 * 146.86457 * 1 2 3
30 30 H 1.09007 * 109.46655 * 29.99967 * 3 2 1
31 31 H 1.08998 * 109.47139 * 150.00470 * 3 2 1
32 32 H 0.96990 * 120.00030 * 179.97438 * 7 6 4
33 33 H 1.08999 * 109.47040 * 66.18621 * 14 12 2
34 34 H 1.09000 * 109.47255 * 306.19074 * 14 12 2
35 35 H 1.08995 * 109.47077 * 54.62586 * 15 14 12
36 36 H 1.09002 * 109.47192 * 294.61735 * 15 14 12
37 37 H 1.08995 * 108.65543 * 295.36039 * 17 16 15
38 38 H 1.09002 * 108.54551 * 177.42071 * 17 16 15
39 39 H 1.08999 * 109.22134 * 304.88636 * 18 17 16
40 40 H 1.09001 * 109.17780 * 185.53545 * 18 17 16
41 41 H 1.07991 * 120.16973 * 358.68258 * 21 20 19
42 42 H 1.07997 * 119.89276 * 179.77777 * 22 21 20
43 43 H 1.07994 * 119.94132 * 180.46397 * 23 22 21
44 44 H 1.08005 * 120.16943 * 179.83542 * 24 23 22
45 45 H 1.08999 * 109.58508 * 78.92073 * 26 16 15
46 46 H 1.09001 * 109.58410 * 199.20185 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7038 -1.4209
5 1 2.0981 1.0959 -2.2417
6 6 3.1260 2.8781 -1.6727
7 7 3.5533 3.6182 -0.6732
8 14 3.4366 3.4177 -3.4340
9 1 2.1388 3.5950 -4.1335
10 1 4.1792 4.7036 -3.4339
11 1 4.2393 2.3831 -4.1344
12 6 2.1389 -1.1671 -0.0005
13 8 3.3476 -1.1695 -0.1006
14 6 1.3906 -2.4693 0.1235
15 6 2.3893 -3.6213 0.2515
16 7 1.6630 -4.8735 0.5012
17 6 0.8335 -5.2351 -0.6452
18 6 1.6083 -5.3576 -1.9396
19 8 2.5387 -6.4454 -1.8740
20 6 3.7451 -6.1468 -1.3184
21 6 4.8877 -6.1165 -2.1056
22 6 6.1022 -5.7849 -1.5357
23 6 6.1789 -5.4797 -0.1890
24 6 5.0403 -5.5148 0.5967
25 6 3.8298 -5.8577 0.0301
26 6 2.5844 -5.9471 0.8903
27 1 -0.3633 -0.0562 1.0262
28 1 -0.3634 0.9168 -0.4642
29 1 -0.3634 -0.8605 -0.5617
30 1 1.6083 2.0284 0.5139
31 1 3.1500 1.1384 0.5137
32 1 4.0301 4.4440 -0.8504
33 1 0.7739 -2.6198 -0.7626
34 1 0.7544 -2.4400 1.0081
35 1 3.0680 -3.4233 1.0811
36 1 2.9610 -3.7108 -0.6723
37 1 0.0624 -4.4751 -0.7711
38 1 0.3504 -6.1896 -0.4363
39 1 2.1521 -4.4307 -2.1214
40 1 0.9109 -5.5310 -2.7592
41 1 4.8279 -6.3504 -3.1582
42 1 6.9943 -5.7637 -2.1440
43 1 7.1290 -5.2139 0.2502
44 1 5.0995 -5.2791 1.6491
45 1 2.8562 -5.8330 1.9396
46 1 2.1032 -6.9137 0.7405
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000063012689.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:24:24
Heat of formation + Delta-G solvation = -55.597249 kcal
Electronic energy + Delta-G solvation = -27444.300276 eV
Core-core repulsion = 23719.543768 eV
Total energy + Delta-G solvation = -3724.756509 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.98220 -40.59357 -38.66711 -37.83592 -36.56578 -34.75357 -33.33046 -32.34850
-31.44449 -29.81609 -29.11482 -27.37562 -26.64553 -25.79232 -24.28396 -23.57061
-22.24034 -21.26933 -19.89585 -18.93825 -18.69014 -18.02918 -17.45779 -17.20389
-16.94050 -16.70007 -16.47474 -16.24358 -16.00943 -15.47262 -15.31514 -14.92309
-14.78466 -14.37237 -14.18224 -13.97943 -13.70561 -13.47849 -13.37763 -13.26817
-13.17538 -13.02740 -12.81246 -12.69652 -12.58080 -12.35034 -12.27474 -12.19767
-12.03124 -11.77459 -11.70464 -11.19743 -10.65292 -10.59516 -9.93764 -9.55427
-9.40321 -9.35389 -8.22937 -6.37748 0.17184 0.30468 1.34712 1.39025
1.46307 1.84852 2.25748 2.36263 2.44164 2.87686 3.04373 3.06593
3.67932 3.74425 3.82221 3.90090 4.00588 4.01788 4.11063 4.22494
4.30061 4.33238 4.42656 4.45173 4.51999 4.56668 4.62897 4.67850
4.74237 4.82801 4.91305 4.96389 4.98393 4.99632 5.05913 5.06840
5.22315 5.31778 5.43464 5.48311 5.55987 5.71788 5.84761 5.90267
6.05667 6.06127 6.41128 6.69114 6.80597 7.27970 7.49815 8.83807
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.014143 B = 0.003593 C = 0.003274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.274676 B = 7791.369703 C = 8551.332328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.612 5.612
3 C 0.260 3.740
4 C -0.542 4.542
5 H 0.051 0.949
6 C 0.008 3.992
7 N -0.929 5.929
8 Si 0.965 3.035
9 H -0.259 1.259
10 H -0.277 1.277
11 H -0.280 1.280
12 C 0.493 3.507
13 O -0.599 6.599
14 C -0.117 4.117
15 C 0.083 3.917
16 N -0.522 5.522
17 C 0.018 3.982
18 C 0.022 3.978
19 O -0.336 6.336
20 C 0.079 3.921
21 C -0.150 4.150
22 C -0.111 4.111
23 C -0.136 4.136
24 C -0.102 4.102
25 C -0.158 4.158
26 C 0.100 3.900
27 H 0.073 0.927
28 H 0.065 0.935
29 H 0.092 0.908
30 H 0.024 0.976
31 H -0.006 1.006
32 H 0.267 0.733
33 H 0.111 0.889
34 H 0.123 0.877
35 H 0.062 0.938
36 H 0.022 0.978
37 H 0.110 0.890
38 H 0.099 0.901
39 H 0.040 0.960
40 H 0.128 0.872
41 H 0.136 0.864
42 H 0.147 0.853
43 H 0.143 0.857
44 H 0.140 0.860
45 H 0.098 0.902
46 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.243 -21.771 1.045 22.672
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.343 5.343
3 C 0.138 3.862
4 C -0.580 4.580
5 H 0.069 0.931
6 C -0.191 4.191
7 N -0.568 5.568
8 Si 0.790 3.210
9 H -0.183 1.183
10 H -0.202 1.202
11 H -0.206 1.206
12 C 0.282 3.718
13 O -0.481 6.481
14 C -0.157 4.157
15 C -0.046 4.046
16 N -0.243 5.243
17 C -0.110 4.110
18 C -0.054 4.054
19 O -0.253 6.253
20 C 0.035 3.965
21 C -0.168 4.168
22 C -0.129 4.129
23 C -0.154 4.154
24 C -0.121 4.121
25 C -0.160 4.160
26 C -0.027 4.027
27 H 0.092 0.908
28 H 0.084 0.916
29 H 0.111 0.889
30 H 0.042 0.958
31 H 0.013 0.987
32 H 0.076 0.924
33 H 0.129 0.871
34 H 0.141 0.859
35 H 0.081 0.919
36 H 0.040 0.960
37 H 0.128 0.872
38 H 0.118 0.882
39 H 0.059 0.941
40 H 0.146 0.854
41 H 0.154 0.846
42 H 0.165 0.835
43 H 0.161 0.839
44 H 0.158 0.842
45 H 0.116 0.884
46 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -5.988 -21.681 1.382 22.536
hybrid contribution 1.318 0.895 -1.446 2.152
sum -4.670 -20.786 -0.064 21.304
Atomic orbital electron populations
1.21927 0.77716 1.03880 1.02735 1.48198 1.08479 1.06306 1.71315
1.18738 0.90962 0.80578 0.95897 1.21661 1.36877 1.06410 0.93072
0.93083 1.25846 0.94921 0.96443 1.01896 1.70036 1.38923 1.14822
1.33050 0.85503 0.78888 0.77341 0.79295 1.18325 1.20209 1.20590
1.21362 0.87733 0.86672 0.76028 1.90649 1.17188 1.88117 1.52111
1.21591 0.98867 0.89072 1.06150 1.21592 0.94585 0.88404 0.99985
1.61901 1.23686 1.02562 1.36180 1.22507 0.96474 1.04456 0.87584
1.23382 0.92130 0.88558 1.01344 1.86301 1.22384 1.36142 1.80496
1.18766 0.86372 1.00106 0.91269 1.21459 0.92688 1.02143 1.00545
1.21366 0.97780 0.98124 0.95617 1.21556 0.99564 0.99914 0.94366
1.21267 0.91726 0.98134 1.00982 1.21209 0.98236 1.02035 0.94520
1.21472 0.87662 0.95167 0.98406 0.90846 0.91641 0.88929 0.95776
0.98738 0.92390 0.87095 0.85894 0.91921 0.95999 0.87158 0.88248
0.94120 0.85386 0.84644 0.83520 0.83915 0.84199 0.88416 0.88603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.28 10.06 127.77 1.29 3.57 16
2 N -0.61 -25.84 2.86 -851.10 -2.43 -28.28 16
3 C 0.26 14.18 5.11 85.63 0.44 14.62 16
4 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16
5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16
6 C 0.01 0.46 5.46 84.66 0.46 0.92 16
7 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16
8 Si 0.97 45.30 29.54 68.60 2.03 47.33 16
9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16
10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16
12 C 0.49 20.41 7.64 87.66 0.67 21.08 16
13 O -0.60 -31.51 15.62 -3.04 -0.05 -31.56 16
14 C -0.12 -3.16 4.04 29.85 0.12 -3.03 16
15 C 0.08 2.31 3.02 86.30 0.26 2.58 16
16 N -0.52 -11.00 4.84 -905.05 -4.38 -15.38 16
17 C 0.02 0.30 5.16 85.92 0.44 0.75 16
18 C 0.02 0.44 6.24 71.44 0.45 0.88 16
19 O -0.34 -8.31 10.04 -95.06 -0.95 -9.26 16
20 C 0.08 2.08 5.21 22.38 0.12 2.19 16
21 C -0.15 -3.78 10.01 22.39 0.22 -3.55 16
22 C -0.11 -2.56 10.03 22.27 0.22 -2.33 16
23 C -0.14 -3.16 10.05 22.32 0.22 -2.93 16
24 C -0.10 -2.46 9.68 22.24 0.22 -2.24 16
25 C -0.16 -3.89 3.50 -19.65 -0.07 -3.96 16
26 C 0.10 2.05 5.74 85.88 0.49 2.54 16
27 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16
28 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16
29 H 0.09 1.96 6.79 -2.39 -0.02 1.95 16
30 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16
31 H -0.01 -0.35 7.50 -2.39 -0.02 -0.37 16
32 H 0.27 15.31 8.31 -92.72 -0.77 14.54 16
33 H 0.11 2.42 6.32 -2.39 -0.02 2.40 16
34 H 0.12 2.69 8.02 -2.39 -0.02 2.67 16
35 H 0.06 2.01 7.96 -2.39 -0.02 1.99 16
36 H 0.02 0.74 4.99 -2.39 -0.01 0.72 16
37 H 0.11 1.46 6.72 -2.39 -0.02 1.44 16
38 H 0.10 1.41 7.89 -2.39 -0.02 1.40 16
39 H 0.04 1.03 6.10 -2.39 -0.01 1.01 16
40 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16
41 H 0.14 3.01 8.06 -2.92 -0.02 2.99 16
42 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16
43 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16
44 H 0.14 2.85 7.99 -2.91 -0.02 2.83 16
45 H 0.10 1.78 7.93 -2.39 -0.02 1.76 16
46 H 0.10 1.76 7.76 -2.39 -0.02 1.75 16
Total: -1.00 -77.97 366.52 1.26 -76.71
By element:
Atomic # 1 Polarization: 16.18 SS G_CDS: 0.97 Total: 17.15 kcal
Atomic # 6 Polarization: -6.10 SS G_CDS: 5.79 Total: -0.31 kcal
Atomic # 7 Polarization: -93.54 SS G_CDS: -6.53 Total: -100.06 kcal
Atomic # 8 Polarization: -39.82 SS G_CDS: -1.00 Total: -40.82 kcal
Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal
Total: -77.97 1.26 -76.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063012689.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.114 kcal
(2) G-P(sol) polarization free energy of solvation -77.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds