Wall clock time and date at job start Tue Mar 31 2020 12:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47166 * 2 1 4 4 C 1.35986 * 117.00222 * 179.97438 * 3 2 1 5 5 C 1.38551 * 120.07673 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.00820 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.18010 * 359.96208 * 6 5 4 8 8 C 1.38203 * 120.16275 * 0.02562 * 7 6 5 9 9 C 1.38702 * 119.98556 * 0.03539 * 8 7 6 10 10 N 1.40170 * 120.09278 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99574 * 24.76661 * 10 9 8 12 12 O 1.21596 * 120.00145 * 5.63321 * 11 10 9 13 13 N 1.34776 * 119.99873 * 185.63163 * 11 10 9 14 14 C 1.46506 * 119.99868 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47022 * 89.99752 * 14 13 11 16 16 H 1.07992 * 120.00384 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99632 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99832 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47247 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47029 * 119.99877 * 19 17 15 22 22 H 1.48502 * 109.47303 * 240.00293 * 19 17 15 23 23 C 1.46492 * 120.00063 * 359.97438 * 13 11 10 24 24 C 1.53008 * 109.46741 * 90.00320 * 23 13 11 25 25 C 1.52999 * 117.49770 * 243.61870 * 24 23 13 26 26 C 1.52994 * 60.00128 * 252.51417 * 25 24 23 27 27 H 1.09002 * 109.47417 * 300.00144 * 1 2 3 28 28 H 1.08998 * 109.47119 * 60.00119 * 1 2 3 29 29 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47059 * 239.99983 * 2 1 3 31 31 H 1.09005 * 109.46840 * 120.00179 * 2 1 3 32 32 H 1.08002 * 119.99110 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.90565 * 179.97438 * 6 5 4 34 34 H 1.08003 * 119.91823 * 179.74622 * 7 6 5 35 35 H 1.08007 * 120.00694 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00479 * 204.76799 * 10 9 8 37 37 H 1.08990 * 109.46805 * 209.99840 * 14 13 11 38 38 H 1.08999 * 109.47005 * 329.99860 * 14 13 11 39 39 H 0.97001 * 120.00023 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47242 * 209.99726 * 23 13 11 41 41 H 1.08997 * 109.47747 * 330.00328 * 23 13 11 42 42 H 1.08993 * 115.55145 * 29.32997 * 24 23 13 43 43 H 1.09006 * 117.49862 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.49664 * 145.01572 * 25 24 23 45 45 H 1.09004 * 117.49585 * 252.51568 * 26 25 24 46 46 H 1.08994 * 117.50150 * 107.49434 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2000 0.4278 0.0005 6 6 5.5703 0.6106 0.0016 7 6 6.1012 1.8873 0.0019 8 6 5.2645 2.9873 0.0017 9 6 3.8887 2.8118 0.0019 10 7 3.0380 3.9258 0.0022 11 6 3.4714 5.1046 -0.4867 12 8 4.5614 5.1776 -1.0208 13 7 2.6967 6.2027 -0.3836 14 6 3.1676 7.4840 -0.9155 15 6 2.7341 7.6212 -2.3523 16 1 2.1645 6.8331 -2.8221 17 6 3.0639 8.7534 -3.0667 18 7 3.7572 9.7134 -2.4945 19 14 2.5260 8.9239 -4.8474 20 1 1.7634 7.7155 -5.2520 21 1 1.6633 10.1241 -4.9912 22 1 3.7229 9.0677 -5.7146 23 6 1.3834 6.1147 0.2593 24 6 1.5294 6.3902 1.7573 25 6 1.1807 5.2547 2.7216 26 6 0.2483 6.4606 2.5908 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7884 -0.5707 -0.0003 33 1 6.2278 -0.2462 0.0020 34 1 7.1724 2.0252 0.0069 35 1 5.6820 3.9834 0.0024 36 1 2.1375 3.8484 0.3542 37 1 2.7437 8.2987 -0.3287 38 1 4.2554 7.5231 -0.8589 39 1 3.9895 10.5097 -2.9972 40 1 0.7127 6.8521 -0.1820 41 1 0.9727 5.1159 0.1119 42 1 2.3480 7.0538 2.0356 43 1 0.8477 4.3113 2.2889 44 1 1.7702 5.1710 3.6346 45 1 0.2244 7.1703 3.4177 46 1 -0.6985 6.3107 2.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078457623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:54 Heat of formation + Delta-G solvation = -6.021094 kcal Electronic energy + Delta-G solvation = -27228.420720 eV Core-core repulsion = 23505.813994 eV Total energy + Delta-G solvation = -3722.606725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.58286 -39.34016 -37.59052 -36.99976 -34.68149 -34.14188 -32.48240 -31.90163 -29.92601 -28.92225 -27.65658 -25.99444 -24.24201 -23.22836 -22.29576 -21.84020 -21.62104 -20.72577 -19.11578 -18.48066 -17.57114 -16.83331 -16.43544 -16.19893 -15.64522 -15.13716 -14.93179 -14.75671 -14.57612 -14.09538 -13.98494 -13.69475 -13.41945 -13.28978 -13.04894 -12.77458 -12.42015 -12.14740 -12.04653 -11.88901 -11.53603 -11.45121 -11.43457 -11.20623 -11.08121 -10.86456 -10.82349 -10.61059 -10.33717 -10.15822 -10.03358 -9.85329 -9.56283 -9.13442 -8.40797 -8.38270 -7.80150 -7.37499 -6.01590 -4.05708 1.53496 1.57928 3.08573 3.27746 3.32052 3.39832 3.45043 3.72683 3.88494 4.14885 4.40448 4.52907 4.72779 4.74403 4.92062 4.95849 5.02465 5.04547 5.07936 5.17132 5.27576 5.32865 5.41868 5.43729 5.57826 5.60174 5.69286 5.74500 5.82276 5.83754 5.97880 6.02384 6.07975 6.17614 6.28966 6.41961 6.44752 6.70417 6.84934 6.86309 7.09213 7.39023 7.51855 7.55653 7.72893 7.96974 8.26136 8.62289 8.95457 9.27973 9.59732 11.06305 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.004139 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.627098 B = 6763.816685 C = 7631.525381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.320 6.320 4 C 0.084 3.916 5 C -0.189 4.189 6 C -0.116 4.116 7 C -0.131 4.131 8 C -0.100 4.100 9 C 0.162 3.838 10 N -0.683 5.683 11 C 0.701 3.299 12 O -0.569 6.569 13 N -0.603 5.603 14 C 0.260 3.740 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.143 3.857 24 C -0.166 4.166 25 C -0.184 4.184 26 C -0.175 4.175 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.404 0.596 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 -18.198 10.629 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.234 6.234 4 C 0.036 3.964 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.150 4.150 8 C -0.121 4.121 9 C 0.064 3.936 10 N -0.332 5.332 11 C 0.403 3.597 12 O -0.446 6.446 13 N -0.336 5.336 14 C 0.141 3.859 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.018 3.982 24 C -0.185 4.185 25 C -0.221 4.221 26 C -0.213 4.213 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.175 0.825 36 H 0.241 0.759 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.970 -17.664 10.180 20.985 hybrid contribution -0.726 -0.153 -0.845 1.125 sum -5.696 -17.817 9.334 20.905 Atomic orbital electron populations 1.21775 0.92926 1.02657 1.03604 1.22700 0.95634 0.82225 1.01139 1.86001 1.18882 1.29006 1.89523 1.18602 0.82441 0.92578 1.02740 1.20909 0.94192 0.97007 1.08674 1.20805 0.94086 0.97219 1.01466 1.20981 0.99787 0.91937 1.02320 1.21473 0.90579 1.01430 0.98628 1.16986 0.90233 0.83344 1.02998 1.42826 1.16942 1.08176 1.65235 1.15903 0.84645 0.79958 0.79214 1.90845 1.21266 1.83900 1.48544 1.47541 1.16733 1.09936 1.59422 1.19252 0.96663 0.76614 0.93357 1.21499 1.34857 1.03192 0.96853 0.92453 1.24907 0.95053 0.95649 0.98388 1.69938 1.38612 1.07968 1.36879 0.86461 0.78384 0.77810 0.84870 1.19869 1.21012 1.20891 1.20975 0.86560 1.01277 0.89414 1.22968 0.99695 1.02202 0.93662 1.23013 1.03940 0.93338 1.01784 1.22897 0.94623 1.01004 1.02751 0.91549 0.91450 0.90564 0.92232 0.92291 0.85730 0.86254 0.85853 0.82530 0.75859 0.94680 0.93657 0.92810 0.89032 0.92206 0.87217 0.89141 0.89151 0.88939 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.54 5.46 37.16 0.20 0.74 16 3 O -0.32 -4.23 9.55 -19.70 -0.19 -4.41 16 4 C 0.08 1.23 6.70 -39.08 -0.26 0.97 16 5 C -0.19 -2.34 9.04 -39.46 -0.36 -2.70 16 6 C -0.12 -1.42 10.04 -39.57 -0.40 -1.82 16 7 C -0.13 -1.84 10.04 -39.58 -0.40 -2.24 16 8 C -0.10 -1.73 8.72 -39.42 -0.34 -2.08 16 9 C 0.16 2.78 6.45 -83.48 -0.54 2.24 16 10 N -0.68 -12.23 5.17 -14.10 -0.07 -12.31 16 11 C 0.70 15.37 8.08 -86.92 -0.70 14.67 16 12 O -0.57 -14.57 13.09 5.28 0.07 -14.50 16 13 N -0.60 -12.94 2.46 -180.80 -0.44 -13.38 16 14 C 0.26 6.78 5.16 -5.19 -0.03 6.75 16 15 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.14 2.37 5.50 -4.04 -0.02 2.35 16 24 C -0.17 -2.37 6.01 -90.62 -0.54 -2.91 16 25 C -0.18 -2.15 10.18 -26.73 -0.27 -2.42 16 26 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.16 3.08 5.79 -52.48 -0.30 2.77 16 36 H 0.40 6.35 5.93 -40.82 -0.24 6.11 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 41 H 0.06 0.88 6.02 -51.93 -0.31 0.57 16 42 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 43 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -33.02 381.24 -10.12 -43.13 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.97 Total: 7.55 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.97 Total: -3.07 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.22 Total: -51.52 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.12 Total: -18.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.02 -10.12 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078457623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.112 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds