Wall clock time and date at job start Tue Mar 31 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47166 * 2 1 4 4 C 1.35986 * 117.00222 * 179.97438 * 3 2 1 5 5 C 1.38551 * 120.07673 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.00820 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.18010 * 359.96208 * 6 5 4 8 8 C 1.38203 * 120.16275 * 0.02562 * 7 6 5 9 9 C 1.38702 * 119.98556 * 0.03539 * 8 7 6 10 10 N 1.40170 * 120.09278 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99574 * 24.76661 * 10 9 8 12 12 O 1.21596 * 120.00145 * 5.63321 * 11 10 9 13 13 N 1.34776 * 119.99873 * 185.63163 * 11 10 9 14 14 C 1.46506 * 119.99868 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47022 * 89.99752 * 14 13 11 16 16 H 1.07992 * 120.00384 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99632 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99832 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47247 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47029 * 119.99877 * 19 17 15 22 22 H 1.48502 * 109.47303 * 240.00293 * 19 17 15 23 23 C 1.46492 * 120.00063 * 359.97438 * 13 11 10 24 24 C 1.53008 * 109.46741 * 90.00320 * 23 13 11 25 25 C 1.52999 * 117.49770 * 243.61870 * 24 23 13 26 26 C 1.52994 * 60.00128 * 252.51417 * 25 24 23 27 27 H 1.09002 * 109.47417 * 300.00144 * 1 2 3 28 28 H 1.08998 * 109.47119 * 60.00119 * 1 2 3 29 29 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47059 * 239.99983 * 2 1 3 31 31 H 1.09005 * 109.46840 * 120.00179 * 2 1 3 32 32 H 1.08002 * 119.99110 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.90565 * 179.97438 * 6 5 4 34 34 H 1.08003 * 119.91823 * 179.74622 * 7 6 5 35 35 H 1.08007 * 120.00694 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00479 * 204.76799 * 10 9 8 37 37 H 1.08990 * 109.46805 * 209.99840 * 14 13 11 38 38 H 1.08999 * 109.47005 * 329.99860 * 14 13 11 39 39 H 0.97001 * 120.00023 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47242 * 209.99726 * 23 13 11 41 41 H 1.08997 * 109.47747 * 330.00328 * 23 13 11 42 42 H 1.08993 * 115.55145 * 29.32997 * 24 23 13 43 43 H 1.09006 * 117.49862 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.49664 * 145.01572 * 25 24 23 45 45 H 1.09004 * 117.49585 * 252.51568 * 26 25 24 46 46 H 1.08994 * 117.50150 * 107.49434 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2000 0.4278 0.0005 6 6 5.5703 0.6106 0.0016 7 6 6.1012 1.8873 0.0019 8 6 5.2645 2.9873 0.0017 9 6 3.8887 2.8118 0.0019 10 7 3.0380 3.9258 0.0022 11 6 3.4714 5.1046 -0.4867 12 8 4.5614 5.1776 -1.0208 13 7 2.6967 6.2027 -0.3836 14 6 3.1676 7.4840 -0.9155 15 6 2.7341 7.6212 -2.3523 16 1 2.1645 6.8331 -2.8221 17 6 3.0639 8.7534 -3.0667 18 7 3.7572 9.7134 -2.4945 19 14 2.5260 8.9239 -4.8474 20 1 1.7634 7.7155 -5.2520 21 1 1.6633 10.1241 -4.9912 22 1 3.7229 9.0677 -5.7146 23 6 1.3834 6.1147 0.2593 24 6 1.5294 6.3902 1.7573 25 6 1.1807 5.2547 2.7216 26 6 0.2483 6.4606 2.5908 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7884 -0.5707 -0.0003 33 1 6.2278 -0.2462 0.0020 34 1 7.1724 2.0252 0.0069 35 1 5.6820 3.9834 0.0024 36 1 2.1375 3.8484 0.3542 37 1 2.7437 8.2987 -0.3287 38 1 4.2554 7.5231 -0.8589 39 1 3.9895 10.5097 -2.9972 40 1 0.7127 6.8521 -0.1820 41 1 0.9727 5.1159 0.1119 42 1 2.3480 7.0538 2.0356 43 1 0.8477 4.3113 2.2889 44 1 1.7702 5.1710 3.6346 45 1 0.2244 7.1703 3.4177 46 1 -0.6985 6.3107 2.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078457623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:53 Heat of formation + Delta-G solvation = -25.003065 kcal Electronic energy + Delta-G solvation = -27229.243840 eV Core-core repulsion = 23505.813994 eV Total energy + Delta-G solvation = -3723.429845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92510 -40.64220 -38.72211 -38.16102 -36.31539 -35.69837 -34.54653 -32.65046 -31.10737 -30.25713 -29.31976 -27.61362 -25.35815 -24.87818 -23.24423 -23.05314 -22.75101 -21.95137 -20.62898 -19.74067 -18.85458 -18.60370 -18.15020 -17.07215 -16.91656 -16.75081 -16.27220 -16.07991 -15.97536 -15.57342 -15.12934 -14.90238 -14.82933 -14.48507 -14.26999 -14.16395 -13.72069 -13.34808 -13.29582 -13.10269 -12.92546 -12.84393 -12.61270 -12.57361 -12.50616 -12.33680 -12.22070 -11.99642 -11.76997 -11.59870 -11.46649 -11.30472 -11.04938 -10.71351 -10.64090 -9.62421 -9.45393 -8.66322 -8.21285 -6.36314 0.38162 0.47441 1.35482 1.38103 1.49474 1.69065 2.16048 2.23680 2.39064 2.77999 2.91508 3.06403 3.11130 3.79193 3.89597 3.94530 4.03694 4.07373 4.12485 4.21101 4.26983 4.27213 4.43017 4.51553 4.56272 4.63730 4.73629 4.76654 4.78897 4.93663 4.99225 4.99636 5.02314 5.15234 5.20503 5.24792 5.28934 5.29587 5.36771 5.54444 5.58193 5.67396 5.78025 5.92557 6.05989 6.07889 6.49818 6.71953 7.02373 7.30449 7.61570 8.85167 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.004139 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.627098 B = 6763.816685 C = 7631.525381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.335 6.335 4 C 0.088 3.912 5 C -0.182 4.182 6 C -0.100 4.100 7 C -0.139 4.139 8 C -0.126 4.126 9 C 0.121 3.879 10 N -0.667 5.667 11 C 0.696 3.304 12 O -0.617 6.617 13 N -0.608 5.608 14 C 0.280 3.720 15 C -0.542 4.542 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.267 1.267 22 H -0.281 1.281 23 C 0.144 3.856 24 C -0.194 4.194 25 C -0.168 4.168 26 C -0.153 4.153 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.414 0.586 37 H 0.028 0.972 38 H 0.000 1.000 39 H 0.267 0.733 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -21.565 10.915 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.250 6.250 4 C 0.041 3.959 5 C -0.201 4.201 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.146 4.146 9 C 0.025 3.975 10 N -0.316 5.316 11 C 0.398 3.602 12 O -0.497 6.497 13 N -0.341 5.341 14 C 0.159 3.841 15 C -0.581 4.581 16 H 0.067 0.933 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.192 1.192 22 H -0.207 1.207 23 C 0.021 3.979 24 C -0.214 4.214 25 C -0.205 4.205 26 C -0.190 4.190 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.253 0.747 37 H 0.046 0.954 38 H 0.019 0.981 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.884 -21.082 10.512 24.543 hybrid contribution -0.128 0.753 -0.868 1.157 sum -7.012 -20.329 9.644 23.568 Atomic orbital electron populations 1.21813 0.91722 1.04179 1.03004 1.23078 0.96649 0.80491 1.02512 1.85997 1.17963 1.31793 1.89233 1.18649 0.83621 0.91900 1.01753 1.21369 0.94050 0.97911 1.06803 1.21264 0.94744 0.97352 0.98536 1.21209 1.00367 0.92011 1.02215 1.21307 0.91557 1.00927 1.00855 1.17255 0.90211 0.84075 1.05941 1.42466 1.17388 1.07155 1.64574 1.16068 0.84053 0.80980 0.79114 1.90809 1.23322 1.84874 1.50721 1.47373 1.18482 1.08478 1.59767 1.18665 0.93863 0.78713 0.92857 1.21718 1.35140 1.03258 0.97993 0.93279 1.25798 0.94865 0.95168 1.02959 1.70050 1.39304 1.08504 1.38738 0.85386 0.78118 0.78328 0.79061 1.19512 1.19172 1.20690 1.21155 0.83913 1.02260 0.90603 1.22688 1.01441 1.04621 0.92618 1.23092 1.03313 0.93381 1.00747 1.23024 0.93740 1.00572 1.01668 0.91600 0.92615 0.87960 0.91292 0.90285 0.81997 0.82229 0.84240 0.86325 0.74726 0.95437 0.98143 0.92360 0.89847 0.90005 0.89797 0.87887 0.88478 0.87740 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.70 5.46 71.98 0.39 1.09 16 3 O -0.33 -8.15 9.55 -93.40 -0.89 -9.05 16 4 C 0.09 2.45 6.70 22.60 0.15 2.60 16 5 C -0.18 -3.88 9.04 22.35 0.20 -3.68 16 6 C -0.10 -2.12 10.04 22.28 0.22 -1.90 16 7 C -0.14 -3.83 10.04 22.27 0.22 -3.61 16 8 C -0.13 -4.57 8.72 22.37 0.20 -4.37 16 9 C 0.12 4.26 6.45 38.17 0.25 4.51 16 10 N -0.67 -24.86 5.17 -316.80 -1.64 -26.49 16 11 C 0.70 32.72 8.08 179.05 1.45 34.16 16 12 O -0.62 -34.44 13.09 -4.02 -0.05 -34.49 16 13 N -0.61 -27.89 2.46 -844.19 -2.07 -29.97 16 14 C 0.28 15.72 5.16 85.63 0.44 16.16 16 15 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.66 5.46 84.66 0.46 1.12 16 18 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 19 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 C 0.14 4.94 5.50 86.38 0.48 5.42 16 24 C -0.19 -5.66 6.01 -10.79 -0.06 -5.73 16 25 C -0.17 -3.71 10.18 30.59 0.31 -3.39 16 26 C -0.15 -3.22 10.25 30.59 0.31 -2.90 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 31 H 0.08 0.88 7.66 -2.38 -0.02 0.86 16 32 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.12 5.20 5.79 -2.91 -0.02 5.18 16 36 H 0.41 13.14 5.93 -92.71 -0.55 12.59 16 37 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 38 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 41 H 0.08 2.40 6.02 -2.39 -0.01 2.38 16 42 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.10 2.02 7.92 -2.38 -0.02 2.00 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -77.53 381.24 4.09 -73.43 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.43 Total: 28.65 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.00 Total: 6.36 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.43 Total: -113.05 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.94 Total: -43.54 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -77.53 4.09 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078457623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -77.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds