Wall clock time and date at job start Tue Mar 31 2020 13:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00094 * 2 1 4 4 C 1.50698 * 109.47279 * 270.00375 * 3 2 1 5 5 H 1.07997 * 119.99997 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99666 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99721 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00479 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46937 * 90.00079 * 8 6 4 10 10 H 1.48500 * 109.47621 * 210.00094 * 8 6 4 11 11 H 1.48500 * 109.46972 * 330.00694 * 8 6 4 12 12 C 1.34776 * 120.00132 * 180.02562 * 2 1 3 13 13 O 1.21591 * 120.00112 * 180.02562 * 12 2 1 14 14 N 1.34776 * 119.99593 * 359.97438 * 12 2 1 15 15 C 1.39952 * 119.99682 * 184.59002 * 14 12 2 16 16 C 1.38884 * 120.07031 * 324.89594 * 15 14 12 17 17 C 1.38098 * 119.92796 * 180.02562 * 16 15 14 18 18 C 1.38302 * 120.06746 * 359.97279 * 17 16 15 19 19 C 1.38260 * 120.14491 * 0.04737 * 18 17 16 20 20 C 1.50698 * 119.96435 * 179.97438 * 19 18 17 21 21 O 1.42893 * 109.47540 * 269.97865 * 20 19 18 22 22 C 1.42894 * 114.00310 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47262 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.49855 * 243.74646 * 23 22 21 25 25 C 1.52999 * 117.49971 * 175.08657 * 23 22 21 26 26 C 1.38131 * 120.06573 * 359.95601 * 19 18 17 27 27 H 1.08998 * 109.46960 * 269.99804 * 1 2 3 28 28 H 1.09003 * 109.47169 * 29.99842 * 1 2 3 29 29 H 1.08999 * 109.47106 * 149.99506 * 1 2 3 30 30 H 1.09001 * 109.46736 * 30.00377 * 3 2 1 31 31 H 1.08998 * 109.46909 * 149.99799 * 3 2 1 32 32 H 0.96996 * 119.99802 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00434 * 4.59353 * 14 12 2 34 34 H 1.08000 * 120.03590 * 0.02562 * 16 15 14 35 35 H 1.07992 * 119.96340 * 180.02562 * 17 16 15 36 36 H 1.08003 * 119.92734 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47047 * 29.98148 * 20 19 18 38 38 H 1.09005 * 109.46799 * 149.97723 * 20 19 18 39 39 H 1.08999 * 109.47326 * 299.99839 * 22 21 20 40 40 H 1.09001 * 109.46991 * 60.00096 * 22 21 20 41 41 H 1.09003 * 115.54813 * 29.41772 * 23 22 21 42 42 H 1.09001 * 117.49973 * 359.97438 * 24 23 22 43 43 H 1.09000 * 117.49588 * 145.02009 * 24 23 22 44 44 H 1.08999 * 117.49897 * 214.98263 * 25 23 22 45 45 H 1.09008 * 117.49789 * 0.02562 * 25 23 22 46 46 H 1.08006 * 120.03302 * 180.29954 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6726 7 7 3.3465 3.2570 -2.9126 8 14 3.7339 3.9287 -0.2528 9 1 5.1070 3.5068 0.1237 10 1 3.7499 5.3554 -0.6645 11 1 2.8275 3.7595 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0001 14 7 1.4650 -2.3343 -0.0005 15 6 2.1614 -3.5444 0.0959 16 6 3.4055 -3.6812 -0.5060 17 6 4.0900 -4.8768 -0.4094 18 6 3.5379 -5.9370 0.2863 19 6 2.2994 -5.8041 0.8862 20 6 1.7014 -6.9622 1.6428 21 8 0.9184 -7.7596 0.7523 22 6 0.3030 -8.8900 1.3729 23 6 -0.5058 -9.6662 0.3316 24 6 -2.0208 -9.7458 0.5296 25 6 -1.1506 -10.9811 0.7745 26 6 1.6098 -4.6109 0.7932 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5139 32 1 3.8233 4.0829 -3.0898 33 1 0.4972 -2.3357 -0.0674 34 1 3.8373 -2.8535 -1.0490 35 1 5.0576 -4.9836 -0.8768 36 1 4.0753 -6.8708 0.3607 37 1 2.5003 -7.5700 2.0676 38 1 1.0673 -6.5837 2.4445 39 1 1.0726 -9.5380 1.7925 40 1 -0.3602 -8.5512 2.1688 41 1 -0.1343 -9.6073 -0.6915 42 1 -2.4413 -9.2456 1.4020 43 1 -2.6461 -9.7396 -0.3632 44 1 -1.2037 -11.7871 0.0426 45 1 -0.9990 -11.2930 1.8079 46 1 0.6444 -4.5062 1.2662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085577198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:45 Heat of formation + Delta-G solvation = -30.086234 kcal Electronic energy + Delta-G solvation = -25536.677822 eV Core-core repulsion = 21813.027554 eV Total energy + Delta-G solvation = -3723.650268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72959 -40.11218 -39.10664 -37.44640 -36.74393 -35.86792 -34.62552 -32.73545 -31.18709 -29.83839 -28.38453 -27.43278 -26.38806 -24.89229 -23.32743 -23.23366 -22.61915 -21.58504 -20.69152 -19.30918 -19.15403 -18.13653 -17.79542 -17.30109 -16.96765 -16.73661 -16.57945 -16.20411 -15.94978 -15.41059 -15.28177 -15.07820 -14.74749 -14.48533 -14.37664 -14.11593 -13.76061 -13.68226 -13.34716 -13.26949 -13.16802 -12.83521 -12.55172 -12.40055 -12.37451 -12.20847 -12.03776 -12.02223 -11.75180 -11.37447 -11.31679 -11.14872 -10.94873 -10.82607 -10.40378 -9.81834 -9.57187 -8.99779 -8.33829 -6.39286 0.30066 0.38745 1.33180 1.38267 1.46216 1.67515 2.10224 2.31468 2.54648 2.89135 2.97665 3.02542 3.13379 3.77287 3.93506 3.98733 4.00757 4.17052 4.23483 4.24658 4.34481 4.37816 4.42328 4.46254 4.52040 4.59966 4.63940 4.71949 4.73946 4.79064 4.80104 4.85919 4.91522 5.02534 5.03744 5.25602 5.27263 5.35050 5.40993 5.44249 5.54878 5.60404 5.62165 5.97600 6.09147 6.25795 6.29884 6.61778 6.96458 7.22287 7.55442 8.83238 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002205 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.367062 B =12697.283984 C =13216.220649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.240 3.760 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.235 1.235 12 C 0.694 3.306 13 O -0.618 6.618 14 N -0.677 5.677 15 C 0.149 3.851 16 C -0.143 4.143 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.078 4.078 20 C 0.110 3.890 21 O -0.401 6.401 22 C 0.090 3.910 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.163 4.163 26 C -0.124 4.124 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 -26.829 13.591 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.117 3.883 4 C -0.576 4.576 5 H 0.044 0.956 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.158 1.158 12 C 0.395 3.605 13 O -0.498 6.498 14 N -0.327 5.327 15 C 0.054 3.946 16 C -0.164 4.164 17 C -0.127 4.127 18 C -0.135 4.135 19 C -0.079 4.079 20 C 0.034 3.966 21 O -0.322 6.322 22 C 0.014 3.986 23 C -0.190 4.190 24 C -0.219 4.219 25 C -0.200 4.200 26 C -0.145 4.145 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.075 -26.529 13.313 31.345 hybrid contribution 0.232 1.062 -0.324 1.134 sum -9.843 -25.467 12.989 30.235 Atomic orbital electron populations 1.21948 0.77608 1.03894 1.03122 1.47127 1.08051 1.04463 1.75531 1.19301 0.92621 0.81051 0.95306 1.21574 1.36883 1.06703 0.92436 0.95615 1.25883 0.95262 0.98987 0.98750 1.70061 1.42681 1.24489 1.21363 0.85678 0.79570 0.77643 0.79803 1.20329 1.19989 1.15753 1.16101 0.85112 0.81187 0.78063 1.90850 1.13701 1.86451 1.58760 1.42577 1.10668 1.02471 1.77028 1.17729 0.93676 0.85453 0.97703 1.21392 0.96096 0.98482 1.00430 1.21218 1.00311 0.92002 0.99191 1.21265 0.95676 0.99101 0.97423 1.19582 0.94652 0.94030 0.99648 1.21314 0.94773 0.89631 0.90861 1.87948 1.66960 1.40060 1.37200 1.22130 0.95676 0.86641 0.94113 1.22164 0.95388 1.00983 1.00455 1.23169 0.92594 1.02251 1.03875 1.23076 1.02516 0.90943 1.03419 1.20906 1.01666 0.92321 0.99585 0.89856 0.90704 0.90201 0.92413 0.96128 0.92273 0.74089 0.87817 0.84410 0.83345 0.90396 0.90858 0.91683 0.92098 0.88294 0.88054 0.88585 0.87780 0.87438 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.24 127.77 1.31 3.47 16 2 N -0.62 -25.64 2.86 -869.30 -2.48 -28.13 16 3 C 0.24 11.79 4.23 85.63 0.36 12.15 16 4 C -0.54 -32.06 9.94 25.60 0.25 -31.81 16 5 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 6 C 0.01 0.54 5.47 84.65 0.46 1.00 16 7 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 8 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 12 C 0.69 30.03 8.12 179.05 1.45 31.48 16 13 O -0.62 -32.61 13.36 -4.00 -0.05 -32.66 16 14 N -0.68 -22.15 5.22 -317.17 -1.65 -23.81 16 15 C 0.15 4.80 6.30 38.15 0.24 5.04 16 16 C -0.14 -5.14 8.70 22.39 0.19 -4.95 16 17 C -0.11 -3.06 10.04 22.25 0.22 -2.83 16 18 C -0.12 -2.64 9.70 22.29 0.22 -2.42 16 19 C -0.08 -1.73 5.51 -19.89 -0.11 -1.84 16 20 C 0.11 1.74 6.06 71.24 0.43 2.17 16 21 O -0.40 -7.56 10.33 -148.98 -1.54 -9.10 16 22 C 0.09 1.18 6.22 71.98 0.45 1.63 16 23 C -0.17 -2.30 6.05 -10.79 -0.07 -2.36 16 24 C -0.18 -2.02 10.18 30.62 0.31 -1.70 16 25 C -0.16 -1.49 10.25 30.62 0.31 -1.18 16 26 C -0.12 -3.04 9.62 22.39 0.22 -2.83 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 29 H 0.08 1.80 6.30 -2.39 -0.02 1.78 16 30 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 31 H 0.02 1.09 6.85 -2.39 -0.02 1.07 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.42 10.31 6.52 -92.71 -0.60 9.70 16 34 H 0.10 4.59 6.23 -2.91 -0.02 4.57 16 35 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -81.45 383.13 3.03 -78.41 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.32 Total: 23.89 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 6.26 Total: 5.03 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.84 Total: -112.16 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.59 Total: -41.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -81.45 3.03 -78.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085577198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.327 kcal (2) G-P(sol) polarization free energy of solvation -81.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds