Wall clock time and date at job start Tue Mar 31 2020 13:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00101 * 2 1 4 4 C 1.50704 * 109.47268 * 270.00391 * 3 2 1 5 5 H 1.08004 * 119.99570 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00108 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00436 * 359.97438 * 6 4 3 8 8 Si 1.86810 * 120.00031 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46698 * 89.99723 * 8 6 4 10 10 H 1.48495 * 109.47071 * 209.99874 * 8 6 4 11 11 H 1.48498 * 109.46866 * 329.99981 * 8 6 4 12 12 C 1.34773 * 120.00116 * 180.02562 * 2 1 3 13 13 O 1.21558 * 120.00375 * 184.84373 * 12 2 1 14 14 C 1.47848 * 119.99958 * 4.85035 * 12 2 1 15 15 C 1.39593 * 120.14008 * 320.80372 * 14 12 2 16 16 C 1.37934 * 119.85558 * 180.02562 * 15 14 12 17 17 C 1.38389 * 120.14156 * 0.02562 * 16 15 14 18 18 C 1.38334 * 120.28989 * 359.95832 * 17 16 15 19 19 C 1.50702 * 119.92369 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47561 * 89.99860 * 19 18 17 21 21 C 1.47009 * 111.00057 * 170.00015 * 20 19 18 22 22 C 1.53103 * 109.25743 * 177.60884 * 21 20 19 23 23 O 1.43015 * 109.29228 * 56.82270 * 22 21 20 24 24 C 1.43010 * 113.73946 * 301.40208 * 23 22 21 25 25 C 1.47018 * 110.99446 * 46.36277 * 20 19 18 26 26 C 1.37977 * 120.14795 * 0.29346 * 18 17 16 27 27 H 1.09004 * 109.46716 * 265.63094 * 1 2 3 28 28 H 1.08994 * 109.47209 * 25.62752 * 1 2 3 29 29 H 1.09000 * 109.47139 * 145.62730 * 1 2 3 30 30 H 1.09000 * 109.46940 * 30.00079 * 3 2 1 31 31 H 1.09002 * 109.47310 * 150.00301 * 3 2 1 32 32 H 0.97000 * 120.00266 * 179.97438 * 7 6 4 33 33 H 1.08005 * 120.07985 * 359.97438 * 15 14 12 34 34 H 1.08006 * 119.93423 * 180.02562 * 16 15 14 35 35 H 1.07996 * 119.85130 * 179.97438 * 17 16 15 36 36 H 1.09009 * 109.46999 * 329.99671 * 19 18 17 37 37 H 1.09007 * 109.47141 * 210.00334 * 19 18 17 38 38 H 1.08994 * 109.51043 * 57.67385 * 21 20 19 39 39 H 1.09001 * 109.51016 * 297.53678 * 21 20 19 40 40 H 1.08993 * 109.50523 * 176.78079 * 22 21 20 41 41 H 1.08997 * 109.50532 * 296.86971 * 22 21 20 42 42 H 1.08996 * 109.47639 * 298.66605 * 24 23 22 43 43 H 1.09010 * 109.54200 * 178.57806 * 24 23 22 44 44 H 1.08995 * 109.50853 * 302.32455 * 25 20 19 45 45 H 1.08998 * 109.50714 * 62.41772 * 25 20 19 46 46 H 1.08000 * 120.07326 * 179.72130 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5543 3.6176 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.3091 4.2597 -3.9009 10 1 4.6993 4.1989 -3.4963 11 1 3.5557 2.2192 -4.3047 12 6 2.1389 -1.1672 -0.0005 13 8 3.3512 -1.1691 0.0884 14 6 1.4036 -2.4452 -0.1094 15 6 0.1904 -2.6151 0.5599 16 6 -0.4903 -3.8101 0.4547 17 6 0.0272 -4.8396 -0.3118 18 6 1.2288 -4.6775 -0.9778 19 6 1.7845 -5.8038 -1.8107 20 7 1.2867 -5.6864 -3.1878 21 6 1.9870 -6.6192 -4.0825 22 6 1.3977 -6.5064 -5.4911 23 8 1.4961 -5.1512 -5.9373 24 6 0.8254 -4.2156 -5.0887 25 6 1.4089 -4.3051 -3.6761 26 6 1.9223 -3.4890 -0.8767 27 1 -0.3633 -0.0783 1.0247 28 1 -0.3633 0.9265 -0.4445 29 1 -0.3633 -0.8482 -0.5802 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0318 4.4431 -0.8505 33 1 -0.2140 -1.8129 1.1595 34 1 -1.4293 -3.9428 0.9716 35 1 -0.5095 -5.7734 -0.3906 36 1 1.4671 -6.7579 -1.3897 37 1 2.8733 -5.7517 -1.8122 38 1 1.8620 -7.6381 -3.7162 39 1 3.0477 -6.3695 -4.1108 40 1 1.9516 -7.1544 -6.1703 41 1 0.3506 -6.8085 -5.4728 42 1 -0.2386 -4.4502 -5.0585 43 1 0.9647 -3.2065 -5.4768 44 1 0.8618 -3.6349 -3.0132 45 1 2.4602 -4.0182 -3.6970 46 1 2.8626 -3.3655 -1.3935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104045180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:53 Heat of formation + Delta-G solvation = -58.729560 kcal Electronic energy + Delta-G solvation = -27049.308010 eV Core-core repulsion = 23324.415674 eV Total energy + Delta-G solvation = -3724.892336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49485 -40.59799 -39.33892 -36.90369 -36.67974 -34.83429 -32.93587 -32.31417 -31.89088 -29.92522 -28.79176 -27.63129 -25.75308 -25.40702 -25.01850 -23.56849 -22.45996 -21.42443 -20.26767 -18.74861 -18.05832 -17.57571 -17.55457 -17.15487 -17.07722 -16.64976 -16.33511 -16.07887 -15.99521 -15.90553 -15.37546 -15.07066 -14.91243 -14.48247 -14.32489 -14.20789 -13.81754 -13.59654 -13.46663 -13.22405 -13.12817 -13.00867 -12.88768 -12.60034 -12.44064 -12.40188 -12.31178 -12.23135 -11.87453 -11.76647 -11.56561 -10.79879 -10.70214 -10.68484 -9.91838 -9.83233 -9.50107 -9.41284 -8.27244 -6.42717 0.01271 0.32188 1.33178 1.36379 1.46532 1.80741 2.23818 2.38294 2.63046 2.88860 3.02302 3.03130 3.57896 3.60621 3.88731 3.90592 4.00658 4.02750 4.13728 4.22741 4.23981 4.32399 4.34580 4.42591 4.55800 4.57444 4.62765 4.68643 4.69723 4.78157 4.82140 4.88633 4.90373 4.96753 4.99027 5.03497 5.15871 5.39505 5.42544 5.49896 5.53658 5.76427 5.80370 5.87491 5.97609 5.99733 6.15349 6.61337 6.67529 7.19761 7.35054 8.80144 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003945 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.236850 B = 7096.139378 C = 8816.417564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.258 3.742 4 C -0.547 4.547 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.536 3.464 13 O -0.601 6.601 14 C -0.140 4.140 15 C -0.093 4.093 16 C -0.113 4.113 17 C -0.070 4.070 18 C -0.094 4.094 19 C 0.097 3.903 20 N -0.525 5.525 21 C 0.015 3.985 22 C 0.060 3.940 23 O -0.409 6.409 24 C 0.066 3.934 25 C 0.016 3.984 26 C -0.078 4.078 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.030 0.970 31 H -0.002 1.002 32 H 0.269 0.731 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.119 0.881 37 H 0.033 0.967 38 H 0.115 0.885 39 H 0.030 0.970 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.017 0.983 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 -23.429 -3.363 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.586 4.586 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.326 3.674 13 O -0.484 6.484 14 C -0.143 4.143 15 C -0.111 4.111 16 C -0.131 4.131 17 C -0.088 4.088 18 C -0.095 4.095 19 C -0.030 4.030 20 N -0.250 5.250 21 C -0.113 4.113 22 C -0.017 4.017 23 O -0.328 6.328 24 C -0.010 4.010 25 C -0.112 4.112 26 C -0.098 4.098 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.133 0.867 39 H 0.048 0.952 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.035 0.965 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.480 -23.297 -3.443 27.135 hybrid contribution 1.872 1.350 -0.374 2.338 sum -11.608 -21.947 -3.817 25.119 Atomic orbital electron populations 1.22279 0.77851 1.03997 1.02615 1.48078 1.08526 1.06102 1.70245 1.18832 0.91221 0.79967 0.96270 1.21668 1.37302 1.06764 0.92819 0.93077 1.25847 0.94678 0.96278 1.02084 1.70046 1.38685 1.14796 1.33062 0.85420 0.78320 0.78212 0.78907 1.18396 1.20411 1.20044 1.19116 0.86823 0.85098 0.76398 1.90695 1.16547 1.88189 1.52981 1.19823 0.97768 0.93144 1.03534 1.21863 0.91970 0.99715 0.97565 1.21515 1.01097 0.91532 0.98928 1.21546 0.93377 1.00297 0.93622 1.19722 0.96447 0.93809 0.99491 1.21170 0.96859 0.97782 0.87187 1.62480 1.55859 1.04817 1.01805 1.22927 0.95797 0.98575 0.94011 1.22872 1.01939 0.82745 0.94124 1.87968 1.76410 1.17915 1.50537 1.22679 0.96649 0.93568 0.88150 1.22805 0.99051 0.91493 0.97856 1.20966 0.98657 0.92806 0.97362 0.90006 0.91118 0.89388 0.95179 0.98381 0.92238 0.83427 0.81345 0.82060 0.86334 0.94858 0.86686 0.95209 0.86626 0.91139 0.90929 0.88699 0.89870 0.96457 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.32 8.88 127.77 1.13 3.45 16 2 N -0.60 -27.07 2.86 -854.56 -2.44 -29.51 16 3 C 0.26 14.47 5.18 85.63 0.44 14.91 16 4 C -0.55 -32.52 9.39 25.60 0.24 -32.28 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.61 5.46 84.65 0.46 1.08 16 7 N -0.93 -56.91 13.29 21.44 0.28 -56.63 16 8 Si 0.97 45.80 29.54 68.60 2.03 47.82 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C 0.54 24.82 7.35 86.79 0.64 25.46 16 13 O -0.60 -34.35 16.46 -3.90 -0.06 -34.41 16 14 C -0.14 -4.74 5.24 -20.09 -0.11 -4.85 16 15 C -0.09 -2.21 7.56 22.52 0.17 -2.04 16 16 C -0.11 -1.85 10.03 22.23 0.22 -1.63 16 17 C -0.07 -1.15 9.69 22.33 0.22 -0.93 16 18 C -0.09 -2.10 4.13 -19.90 -0.08 -2.18 16 19 C 0.10 1.79 5.43 85.56 0.46 2.26 16 20 N -0.52 -10.14 4.87 -899.76 -4.38 -14.52 16 21 C 0.01 0.23 5.63 86.32 0.49 0.72 16 22 C 0.06 0.95 7.01 72.02 0.50 1.45 16 23 O -0.41 -9.63 10.83 -148.98 -1.61 -11.24 16 24 C 0.07 1.48 7.01 72.02 0.50 1.99 16 25 C 0.02 0.40 4.66 86.32 0.40 0.81 16 26 C -0.08 -2.46 7.45 22.52 0.17 -2.29 16 27 H 0.08 1.99 6.90 -2.39 -0.02 1.97 16 28 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 29 H 0.09 2.33 5.81 -2.39 -0.01 2.31 16 30 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.00 -0.13 7.36 -2.39 -0.02 -0.14 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.15 3.08 5.31 -2.91 -0.02 3.07 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.12 1.48 8.08 -2.38 -0.02 1.46 16 37 H 0.03 0.71 8.02 -2.38 -0.02 0.69 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.08 2.21 5.93 -2.39 -0.01 2.19 16 45 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 3.46 8.05 -2.91 -0.02 3.44 16 Total: -1.00 -80.89 370.05 0.65 -80.24 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.33 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.87 Total: 5.92 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -6.54 Total: -100.67 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.68 Total: -45.65 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -80.89 0.65 -80.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104045180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.511 kcal (2) G-P(sol) polarization free energy of solvation -80.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds