Wall clock time and date at job start Tue Mar 31 2020 12:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47245 * 2 1 4 4 C 1.35649 * 117.00085 * 179.97438 * 3 2 1 5 5 C 1.38710 * 120.14827 * 359.97438 * 4 3 2 6 6 C 1.38057 * 120.08244 * 180.02562 * 5 4 3 7 7 C 1.38547 * 120.38973 * 359.97438 * 6 5 4 8 8 C 1.37785 * 120.30262 * 0.02562 * 7 6 5 9 9 C 1.39710 * 119.90585 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.19005 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00045 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99706 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99213 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.45748 * 275.06383 * 13 12 10 15 15 C 1.53198 * 109.31111 * 178.61737 * 14 13 12 16 16 N 1.46930 * 108.77346 * 54.63706 * 15 14 13 17 17 C 1.36937 * 120.62679 * 126.41232 * 16 15 14 18 18 H 1.07992 * 120.00323 * 331.82400 * 17 16 15 19 19 C 1.38814 * 119.99454 * 151.82988 * 17 16 15 20 20 N 1.31617 * 120.00326 * 343.06705 * 19 17 16 21 21 Si 1.86805 * 119.99958 * 163.06862 * 19 17 16 22 22 H 1.48501 * 109.46988 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47326 * 119.99437 * 21 19 17 24 24 H 1.48497 * 109.47245 * 239.99728 * 21 19 17 25 25 C 1.46921 * 118.73733 * 306.39089 * 16 15 14 26 26 C 1.53039 * 109.45757 * 154.99934 * 13 12 10 27 27 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47716 * 299.99911 * 1 2 3 29 29 H 1.08998 * 109.46887 * 60.00374 * 1 2 3 30 30 H 1.08997 * 109.47324 * 239.99748 * 2 1 3 31 31 H 1.09006 * 109.46833 * 120.00296 * 2 1 3 32 32 H 1.08002 * 119.96429 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.80746 * 180.27486 * 6 5 4 34 34 H 1.08007 * 119.84960 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.04623 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00221 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.46151 * 35.02692 * 13 12 10 38 38 H 1.08997 * 109.50037 * 298.56865 * 14 13 12 39 39 H 1.08996 * 109.49961 * 58.66870 * 14 13 12 40 40 H 1.08992 * 109.58667 * 294.85117 * 15 14 13 41 41 H 1.08997 * 109.70202 * 174.48831 * 15 14 13 42 42 H 0.96998 * 120.00174 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58620 * 293.82005 * 25 16 15 44 44 H 1.09000 * 109.70233 * 173.46445 * 25 16 15 45 45 H 1.09000 * 109.49668 * 301.33810 * 26 13 12 46 46 H 1.09004 * 109.49839 * 61.43040 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1989 0.4272 0.0016 6 6 5.5674 0.6096 0.0027 7 6 6.1042 1.8869 0.0022 8 6 5.2769 2.9887 0.0011 9 6 3.8902 2.8185 0.0000 10 6 2.9984 3.9939 -0.0017 11 8 1.7921 3.8418 -0.0031 12 7 3.5211 5.2362 -0.0016 13 6 2.6355 6.4033 -0.0027 14 6 2.2271 6.7320 -1.4406 15 6 1.2739 7.9313 -1.4349 16 7 1.9168 9.0430 -0.7211 17 6 2.0365 10.2736 -1.3096 18 1 2.0981 10.3544 -2.3848 19 6 2.0789 11.4174 -0.5241 20 7 1.6775 11.3707 0.7285 21 14 2.7056 13.0228 -1.2448 22 1 3.0941 12.8107 -2.6624 23 1 1.6347 14.0491 -1.1729 24 1 3.8866 13.4846 -0.4722 25 6 2.4285 8.8092 0.6362 26 6 3.3687 7.6001 0.6073 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7881 -0.5717 0.0016 33 1 6.2234 -0.2483 -0.0010 34 1 7.1761 2.0195 0.0026 35 1 5.6997 3.9825 0.0012 36 1 4.4834 5.3576 -0.0009 37 1 1.7451 6.1841 0.5865 38 1 3.1148 6.9756 -2.0243 39 1 1.7257 5.8709 -1.8822 40 1 0.3475 7.6594 -0.9291 41 1 1.0560 8.2323 -2.4596 42 1 1.7067 12.1700 1.2772 43 1 1.5962 8.6089 1.3109 44 1 2.9740 9.6882 0.9797 45 1 3.6798 7.3568 1.6233 46 1 4.2457 7.8356 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:51 Heat of formation + Delta-G solvation = -29.550945 kcal Electronic energy + Delta-G solvation = -26704.172999 eV Core-core repulsion = 22980.545943 eV Total energy + Delta-G solvation = -3723.627056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67923 -39.14743 -37.65892 -37.07118 -34.33145 -32.40059 -32.13866 -31.22115 -30.02009 -29.76826 -29.13172 -25.21563 -24.39519 -23.59755 -22.19888 -21.89297 -21.68583 -20.11336 -19.41331 -18.52898 -17.30570 -16.62491 -16.32844 -16.27972 -15.32988 -15.13098 -14.88390 -14.76457 -14.53756 -13.84478 -13.60972 -13.52394 -13.45048 -13.32808 -12.90406 -12.80222 -12.54070 -12.34004 -12.19560 -12.15196 -11.83454 -11.41197 -11.26552 -11.09439 -10.98294 -10.78839 -10.70696 -10.42682 -10.21987 -9.99240 -9.78476 -9.62200 -9.37396 -9.30142 -8.63467 -8.45392 -8.36983 -6.64942 -5.76800 -3.18851 0.70229 1.15637 2.96678 2.98000 3.37788 3.43623 3.46499 3.48899 3.79083 4.46456 4.49318 4.51841 4.68103 4.76642 4.79240 4.95472 5.00324 5.09916 5.18369 5.37516 5.44532 5.46336 5.53499 5.60354 5.60886 5.66191 5.85687 5.94475 5.95637 6.00798 6.13541 6.16127 6.33683 6.40550 6.44454 6.58285 6.64079 6.65883 6.85215 7.00703 7.04967 7.22198 7.35730 7.64244 7.81202 7.86114 8.47479 8.55392 9.23735 9.87054 10.44439 11.32119 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.002745 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.508986 B =10198.274363 C =11006.283476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.277 6.277 4 C 0.186 3.814 5 C -0.224 4.224 6 C -0.057 4.057 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.168 4.168 10 C 0.554 3.446 11 O -0.520 6.520 12 N -0.723 5.723 13 C 0.153 3.847 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.175 3.825 26 C -0.147 4.147 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.392 0.608 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.253 0.747 43 H 0.021 0.979 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -24.438 -0.095 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.188 6.188 4 C 0.137 3.863 5 C -0.242 4.242 6 C -0.076 4.076 7 C -0.187 4.187 8 C -0.066 4.066 9 C -0.172 4.172 10 C 0.341 3.659 11 O -0.397 6.397 12 N -0.374 5.374 13 C 0.050 3.950 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.226 0.774 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.785 -24.240 0.011 25.171 hybrid contribution 1.019 0.589 -0.283 1.210 sum 7.804 -23.650 -0.272 24.906 Atomic orbital electron populations 1.21739 0.92434 1.02429 1.04177 1.22878 0.96513 0.82271 1.01000 1.86413 1.17675 1.28298 1.86404 1.19039 0.83219 0.92634 0.91412 1.21240 0.94394 0.97966 1.10634 1.21094 0.94243 0.97497 0.94722 1.20981 1.00121 0.92182 1.05464 1.21223 0.91274 0.99600 0.94552 1.19543 0.93733 0.91672 1.12280 1.17971 0.87932 0.82800 0.77225 1.90817 1.14305 1.85835 1.48699 1.46251 1.10231 1.05721 1.75243 1.21021 0.93204 0.83369 0.97415 1.22370 1.00661 0.99096 0.95761 1.20875 0.92931 0.87552 0.96566 1.44106 1.65816 1.07198 1.14475 1.19238 1.44368 0.82801 0.91579 0.91618 1.25057 1.00437 0.97630 0.96630 1.70036 1.48969 1.28167 1.07609 0.86231 0.78308 0.83763 0.78522 1.20278 1.21748 1.21603 1.20728 0.94001 0.94158 0.86278 1.22537 1.00438 0.96650 0.99023 0.90593 0.91258 0.91252 0.92142 0.92145 0.85008 0.85475 0.85312 0.84905 0.77362 0.90015 0.92397 0.92699 0.96184 0.92606 0.93686 0.96129 0.89064 0.92751 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.28 -3.89 8.21 -40.53 -0.33 -4.22 16 4 C 0.19 2.40 6.70 -38.70 -0.26 2.14 16 5 C -0.22 -2.13 9.03 -39.47 -0.36 -2.49 16 6 C -0.06 -0.46 10.03 -39.53 -0.40 -0.86 16 7 C -0.17 -1.42 10.02 -39.63 -0.40 -1.82 16 8 C -0.05 -0.49 9.54 -39.20 -0.37 -0.86 16 9 C -0.17 -2.28 5.89 -104.85 -0.62 -2.90 16 10 C 0.55 9.23 7.73 -12.47 -0.10 9.14 16 11 O -0.52 -10.63 14.82 -16.59 -0.25 -10.87 16 12 N -0.72 -11.06 5.03 -54.80 -0.28 -11.34 16 13 C 0.15 2.80 2.41 -67.89 -0.16 2.64 16 14 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 15 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 16 N -0.59 -15.09 2.99 -172.33 -0.52 -15.61 16 17 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 20 N -0.90 -26.30 11.19 55.49 0.62 -25.68 16 21 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 26 C -0.15 -2.76 5.55 -26.61 -0.15 -2.90 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 32 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.13 1.08 6.40 -52.49 -0.34 0.75 16 36 H 0.39 4.81 6.63 -40.82 -0.27 4.54 16 37 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -33.61 369.58 -9.91 -43.52 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.05 Total: 2.62 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.65 Total: -0.68 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.17 Total: -52.62 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.58 Total: -15.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.61 -9.91 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.971 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds